HEADER ONCOPROTEIN/INHIBITOR 17-SEP-22 8GWW TITLE SMALL-MOLECULE ALLOSTERIC REGULATION MECHANISM OF SHP2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SH-PTP2,SHP-2,SHP2; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHATASE, ONCOPROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.LUO,J.ZHU,K.YU,B.LIU REVDAT 1 20-SEP-23 8GWW 0 JRNL AUTH Y.LUO,J.ZHU,K.YU,B.LIU JRNL TITL SMALL-MOLECULE ALLOSTERIC REGULATION MECHANISM OF SHP2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 21267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1862 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8100 - 7.0400 0.96 1661 159 0.2424 0.2993 REMARK 3 2 7.0400 - 5.5900 0.98 1617 154 0.2533 0.2612 REMARK 3 3 5.5900 - 4.8900 0.97 1585 153 0.2208 0.2587 REMARK 3 4 4.8900 - 4.4400 0.96 1543 150 0.1963 0.2341 REMARK 3 5 4.4400 - 4.1200 0.97 1547 148 0.2037 0.2680 REMARK 3 6 4.1200 - 3.8800 0.95 1519 145 0.2256 0.2693 REMARK 3 7 3.8800 - 3.6900 0.94 1476 144 0.2209 0.3012 REMARK 3 8 3.6900 - 3.5300 0.94 1488 147 0.2499 0.2552 REMARK 3 9 3.5300 - 3.3900 0.93 1482 146 0.2675 0.3522 REMARK 3 10 3.3900 - 3.2700 0.90 1409 136 0.2715 0.3323 REMARK 3 11 3.2700 - 3.1700 0.88 1388 128 0.2792 0.3486 REMARK 3 12 3.1700 - 3.0800 0.86 1357 129 0.2961 0.3253 REMARK 3 13 3.0800 - 3.0000 0.85 1333 123 0.3077 0.4116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.58 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8GWW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-22. REMARK 100 THE DEPOSITION ID IS D_1300032299. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOMAR REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22835 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 91.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6WU8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS-HCL, PH 8.5, 13%-18% PEG REMARK 280 4000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.24950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 106.78500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 106.78500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.24950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 35 REMARK 465 SER A 36 REMARK 465 GLU A 90 REMARK 465 LYS A 91 REMARK 465 ASN A 92 REMARK 465 GLY A 93 REMARK 465 LYS A 120 REMARK 465 GLU A 121 REMARK 465 ASP A 155 REMARK 465 ASP A 156 REMARK 465 LYS A 157 REMARK 465 GLY A 158 REMARK 465 GLU A 159 REMARK 465 SER A 160 REMARK 465 ASN A 161 REMARK 465 ASP A 162 REMARK 465 GLY A 163 REMARK 465 LYS A 164 REMARK 465 GLY A 207 REMARK 465 LEU A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 ASP A 241 REMARK 465 LYS A 242 REMARK 465 VAL A 243 REMARK 465 LYS A 244 REMARK 465 GLN A 245 REMARK 465 GLY A 295 REMARK 465 ASP A 296 REMARK 465 PRO A 297 REMARK 465 ASN A 298 REMARK 465 GLU A 299 REMARK 465 PRO A 300 REMARK 465 VAL A 301 REMARK 465 GLU A 313 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 MET B 1 REMARK 465 HIS B 85 REMARK 465 GLY B 86 REMARK 465 LYS B 89 REMARK 465 GLU B 90 REMARK 465 LYS B 91 REMARK 465 ASN B 92 REMARK 465 GLY B 93 REMARK 465 ASP B 94 REMARK 465 ASP B 155 REMARK 465 ASP B 156 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 SER B 160 REMARK 465 ASN B 161 REMARK 465 ASP B 162 REMARK 465 GLY B 163 REMARK 465 LYS B 164 REMARK 465 LEU B 236 REMARK 465 ALA B 237 REMARK 465 GLU B 238 REMARK 465 THR B 239 REMARK 465 THR B 240 REMARK 465 ASP B 241 REMARK 465 LYS B 242 REMARK 465 VAL B 243 REMARK 465 LYS B 244 REMARK 465 GLN B 245 REMARK 465 GLY B 295 REMARK 465 ASP B 296 REMARK 465 PRO B 297 REMARK 465 ASN B 298 REMARK 465 GLU B 299 REMARK 465 PRO B 300 REMARK 465 VAL B 301 REMARK 465 GLU B 313 REMARK 465 PHE B 314 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 LYS B 317 REMARK 465 CYS B 318 REMARK 465 ASN B 319 REMARK 465 ASN B 320 REMARK 465 SER B 321 REMARK 465 LYS B 322 REMARK 465 PRO B 323 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 11 CG1 CG2 CD1 REMARK 470 VAL A 14 CG1 CG2 REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 37 CG OD1 ND2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 GLN A 57 CG CD OE1 NE2 REMARK 470 TYR A 66 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 GLU A 83 CG CD OE1 OE2 REMARK 470 HIS A 85 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 94 CG OD1 OD2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 HIS A 116 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 LEU A 177 CG CD1 CD2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 LYS A 199 CG CD CE NZ REMARK 470 GLN A 211 CG CD OE1 NE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 ILE A 226 CG1 CG2 CD1 REMARK 470 GLU A 227 CG CD OE1 OE2 REMARK 470 ARG A 231 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLN A 335 CG CD OE1 NE2 REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 HIS A 426 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 437 CG OD1 OD2 REMARK 470 MET A 450 CG SD CE REMARK 470 ASP A 477 CG OD1 OD2 REMARK 470 GLU A 481 CG CD OE1 OE2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 ARG A 512 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 522 CG1 CG2 CD1 REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 470 LEU A 525 CG CD1 CD2 REMARK 470 ARG B 5 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 11 CG1 CG2 CD1 REMARK 470 GLU B 17 CG CD OE1 OE2 REMARK 470 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 GLU B 83 CG CD OE1 OE2 REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 HIS B 116 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 HIS B 143 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 166 CG CD CE NZ REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 177 CG CD1 CD2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 LEU B 206 CG CD1 CD2 REMARK 470 LEU B 210 CG CD1 CD2 REMARK 470 GLN B 211 CG CD OE1 NE2 REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 GLU B 227 CG CD OE1 OE2 REMARK 470 ARG B 231 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 232 CG CD OE1 OE2 REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 LYS B 324 CG CD CE NZ REMARK 470 ARG B 362 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 364 CG CD CE NZ REMARK 470 LYS B 389 CG CD CE NZ REMARK 470 LYS B 402 CG CD CE NZ REMARK 470 LYS B 405 CG CD CE NZ REMARK 470 ASP B 425 CG OD1 OD2 REMARK 470 HIS B 426 CG ND1 CD2 CE1 NE2 REMARK 470 MET B 450 CG SD CE REMARK 470 ASP B 451 CG OD1 OD2 REMARK 470 ASP B 477 CG OD1 OD2 REMARK 470 GLU B 481 CG CD OE1 OE2 REMARK 470 LYS B 482 CG CD CE NZ REMARK 470 LYS B 492 CG CD CE NZ REMARK 470 ARG B 512 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 523 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 32.33 -87.04 REMARK 500 ARG A 4 8.27 58.49 REMARK 500 SER A 142 -75.11 -77.55 REMARK 500 THR A 205 12.54 -69.65 REMARK 500 LYS A 213 -74.26 -73.44 REMARK 500 ASN A 306 89.81 -68.79 REMARK 500 TYR A 375 -3.32 75.14 REMARK 500 CYS A 459 -110.63 -136.21 REMARK 500 SER A 460 -76.00 -97.73 REMARK 500 ILE A 463 -34.79 -135.75 REMARK 500 VAL A 505 112.99 64.11 REMARK 500 THR A 524 43.21 -99.86 REMARK 500 SER B 3 32.33 -87.04 REMARK 500 ARG B 4 8.20 58.52 REMARK 500 SER B 142 -75.11 -70.29 REMARK 500 THR B 205 12.57 -69.73 REMARK 500 LYS B 213 -74.20 -73.46 REMARK 500 ASN B 306 89.78 -68.77 REMARK 500 TYR B 375 -3.29 75.15 REMARK 500 CYS B 459 -110.67 -136.26 REMARK 500 SER B 460 -76.01 -97.71 REMARK 500 ILE B 463 -34.77 -135.71 REMARK 500 VAL B 505 112.97 64.13 REMARK 500 THR B 524 43.22 -99.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 8GWW A 1 525 UNP Q06124 PTN11_HUMAN 1 525 DBREF 8GWW B 1 525 UNP Q06124 PTN11_HUMAN 1 525 SEQRES 1 A 525 MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR GLY SEQRES 2 A 525 VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL ASP SEQRES 3 A 525 GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO GLY SEQRES 4 A 525 ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL THR SEQRES 5 A 525 HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP LEU SEQRES 6 A 525 TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU VAL SEQRES 7 A 525 GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU LYS SEQRES 8 A 525 ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN CYS SEQRES 9 A 525 ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS LEU SEQRES 10 A 525 SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS GLY SEQRES 11 A 525 LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SER HIS SEQRES 12 A 525 PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP ASP SEQRES 13 A 525 LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR HIS SEQRES 14 A 525 VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL GLY SEQRES 15 A 525 GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL GLU SEQRES 16 A 525 HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY THR SEQRES 17 A 525 VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG ILE SEQRES 18 A 525 ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SER SEQRES 19 A 525 LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY PHE SEQRES 20 A 525 TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS LYS SEQRES 21 A 525 LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU ASN SEQRES 22 A 525 LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE ASP SEQRES 23 A 525 HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN GLU SEQRES 24 A 525 PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET PRO SEQRES 25 A 525 GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS LYS SEQRES 26 A 525 SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR VAL SEQRES 27 A 525 ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER ARG SEQRES 28 A 525 VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY LYS SEQRES 29 A 525 SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA LEU SEQRES 30 A 525 LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS GLU SEQRES 31 A 525 SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS LEU SEQRES 32 A 525 SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL TRP SEQRES 33 A 525 GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL PRO SEQRES 34 A 525 SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU VAL SEQRES 35 A 525 HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO VAL SEQRES 36 A 525 VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY THR SEQRES 37 A 525 PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG GLU SEQRES 38 A 525 LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR ILE SEQRES 39 A 525 GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN THR SEQRES 40 A 525 GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN HIS SEQRES 41 A 525 TYR ILE GLU THR LEU SEQRES 1 B 525 MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR GLY SEQRES 2 B 525 VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL ASP SEQRES 3 B 525 GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO GLY SEQRES 4 B 525 ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL THR SEQRES 5 B 525 HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP LEU SEQRES 6 B 525 TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU VAL SEQRES 7 B 525 GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU LYS SEQRES 8 B 525 ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN CYS SEQRES 9 B 525 ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS LEU SEQRES 10 B 525 SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS GLY SEQRES 11 B 525 LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SER HIS SEQRES 12 B 525 PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP ASP SEQRES 13 B 525 LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR HIS SEQRES 14 B 525 VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL GLY SEQRES 15 B 525 GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL GLU SEQRES 16 B 525 HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY THR SEQRES 17 B 525 VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG ILE SEQRES 18 B 525 ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SER SEQRES 19 B 525 LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY PHE SEQRES 20 B 525 TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS LYS SEQRES 21 B 525 LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU ASN SEQRES 22 B 525 LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE ASP SEQRES 23 B 525 HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN GLU SEQRES 24 B 525 PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET PRO SEQRES 25 B 525 GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS LYS SEQRES 26 B 525 SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR VAL SEQRES 27 B 525 ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER ARG SEQRES 28 B 525 VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY LYS SEQRES 29 B 525 SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA LEU SEQRES 30 B 525 LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS GLU SEQRES 31 B 525 SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS LEU SEQRES 32 B 525 SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL TRP SEQRES 33 B 525 GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL PRO SEQRES 34 B 525 SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU VAL SEQRES 35 B 525 HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO VAL SEQRES 36 B 525 VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY THR SEQRES 37 B 525 PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG GLU SEQRES 38 B 525 LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR ILE SEQRES 39 B 525 GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN THR SEQRES 40 B 525 GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN HIS SEQRES 41 B 525 TYR ILE GLU THR LEU HET KID A 601 28 HET KID B 601 28 HETNAM KID 2-[4-(AMINOMETHYL)-4-METHYL-PIPERIDIN-1-YL]-5-[2,3- HETNAM 2 KID BIS(CHLORANYL)PHENYL]-3-METHYL-PYRROLO[2,1-F][1,2, HETNAM 3 KID 4]TRIAZIN-4-ONE FORMUL 3 KID 2(C20 H23 CL2 N5 O) HELIX 1 AA1 THR A 12 GLY A 24 1 13 HELIX 2 AA2 THR A 73 MET A 82 1 10 HELIX 3 AA3 ASP A 106 GLU A 110 5 5 HELIX 4 AA4 GLU A 123 LYS A 129 1 7 HELIX 5 AA5 SER A 189 ASN A 200 1 12 HELIX 6 AA6 GLU A 225 SER A 234 1 10 HELIX 7 AA7 PHE A 247 GLN A 257 1 11 HELIX 8 AA8 GLU A 258 LEU A 262 5 5 HELIX 9 AA9 LYS A 266 ASN A 277 5 12 HELIX 10 AB1 THR A 337 GLU A 348 1 12 HELIX 11 AB2 PRO A 432 SER A 448 1 17 HELIX 12 AB3 ILE A 463 GLY A 483 1 21 HELIX 13 AB4 ASP A 489 SER A 499 1 11 HELIX 14 AB5 THR A 507 THR A 524 1 18 HELIX 15 AB6 THR B 12 GLY B 24 1 13 HELIX 16 AB7 THR B 73 MET B 82 1 10 HELIX 17 AB8 ASP B 106 GLU B 110 5 5 HELIX 18 AB9 SER B 118 LYS B 129 1 12 HELIX 19 AC1 SER B 189 ASN B 200 1 12 HELIX 20 AC2 GLU B 225 SER B 234 1 10 HELIX 21 AC3 PHE B 247 GLN B 257 1 11 HELIX 22 AC4 GLU B 258 LEU B 262 5 5 HELIX 23 AC5 LYS B 266 ASN B 277 5 12 HELIX 24 AC6 THR B 337 GLU B 348 1 12 HELIX 25 AC7 PRO B 432 SER B 448 1 17 HELIX 26 AC8 ILE B 463 GLY B 483 1 21 HELIX 27 AC9 ASP B 489 SER B 499 1 11 HELIX 28 AD1 THR B 507 THR B 524 1 18 SHEET 1 AA1 6 LYS A 70 PHE A 71 0 SHEET 2 AA1 6 TYR A 63 LEU A 65 -1 N TYR A 63 O PHE A 71 SHEET 3 AA1 6 ALA A 50 GLN A 57 -1 N GLN A 57 O ASP A 64 SHEET 4 AA1 6 PHE A 41 ARG A 47 -1 N ARG A 47 O ALA A 50 SHEET 5 AA1 6 SER A 28 PRO A 33 -1 N ARG A 32 O THR A 42 SHEET 6 AA1 6 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 AA2 5 PHE A 113 GLY A 115 0 SHEET 2 AA2 5 PHE A 135 GLU A 139 1 O GLU A 139 N GLY A 115 SHEET 3 AA2 5 PHE A 147 THR A 153 -1 O VAL A 148 N ARG A 138 SHEET 4 AA2 5 LYS A 166 CYS A 174 -1 O THR A 168 N VAL A 151 SHEET 5 AA2 5 TYR A 179 ASP A 180 -1 O ASP A 180 N ARG A 173 SHEET 1 AA3 2 MET A 202 VAL A 203 0 SHEET 2 AA3 2 VAL A 209 LEU A 210 -1 O LEU A 210 N MET A 202 SHEET 1 AA4 2 ILE A 221 ASN A 222 0 SHEET 2 AA4 2 ASP A 487 ILE A 488 -1 O ILE A 488 N ILE A 221 SHEET 1 AA5 8 ALA A 307 ILE A 310 0 SHEET 2 AA5 8 TYR A 327 THR A 330 -1 O TYR A 327 N ILE A 310 SHEET 3 AA5 8 VAL A 455 HIS A 458 1 O VAL A 457 N ILE A 328 SHEET 4 AA5 8 VAL A 352 MET A 355 1 N VAL A 354 O VAL A 456 SHEET 5 AA5 8 ARG A 413 PHE A 420 1 O TYR A 418 N MET A 355 SHEET 6 AA5 8 TYR A 396 LYS A 405 -1 N LEU A 401 O VAL A 415 SHEET 7 AA5 8 MET A 383 ALA A 392 -1 N ARG A 384 O SER A 404 SHEET 8 AA5 8 LEU A 377 TYR A 380 -1 N TYR A 380 O MET A 383 SHEET 1 AA6 2 VAL A 360 GLU A 361 0 SHEET 2 AA6 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 SHEET 1 AA7 6 LYS B 70 PHE B 71 0 SHEET 2 AA7 6 TYR B 63 LEU B 65 -1 N TYR B 63 O PHE B 71 SHEET 3 AA7 6 ALA B 50 GLN B 57 -1 N GLN B 57 O ASP B 64 SHEET 4 AA7 6 PHE B 41 ARG B 47 -1 N ARG B 47 O ALA B 50 SHEET 5 AA7 6 SER B 28 PRO B 33 -1 N ARG B 32 O THR B 42 SHEET 6 AA7 6 TYR B 100 PRO B 101 1 O TYR B 100 N PHE B 29 SHEET 1 AA8 5 PHE B 113 GLY B 115 0 SHEET 2 AA8 5 PHE B 135 GLU B 139 1 O GLU B 139 N GLY B 115 SHEET 3 AA8 5 PHE B 147 THR B 153 -1 O VAL B 148 N ARG B 138 SHEET 4 AA8 5 LYS B 166 CYS B 174 -1 O THR B 168 N VAL B 151 SHEET 5 AA8 5 TYR B 179 ASP B 180 -1 O ASP B 180 N ARG B 173 SHEET 1 AA9 2 MET B 202 VAL B 203 0 SHEET 2 AA9 2 VAL B 209 LEU B 210 -1 O LEU B 210 N MET B 202 SHEET 1 AB1 2 ILE B 221 ASN B 222 0 SHEET 2 AB1 2 ASP B 487 ILE B 488 -1 O ILE B 488 N ILE B 221 SHEET 1 AB2 8 ALA B 307 ILE B 310 0 SHEET 2 AB2 8 TYR B 327 THR B 330 -1 O TYR B 327 N ILE B 310 SHEET 3 AB2 8 VAL B 455 HIS B 458 1 O VAL B 457 N ILE B 328 SHEET 4 AB2 8 VAL B 352 MET B 355 1 N VAL B 354 O VAL B 456 SHEET 5 AB2 8 ARG B 413 PHE B 420 1 O TYR B 418 N MET B 355 SHEET 6 AB2 8 TYR B 396 LYS B 405 -1 N LEU B 401 O VAL B 415 SHEET 7 AB2 8 MET B 383 ALA B 392 -1 N ARG B 384 O SER B 404 SHEET 8 AB2 8 LEU B 377 TYR B 380 -1 N TYR B 380 O MET B 383 SHEET 1 AB3 2 VAL B 360 GLU B 361 0 SHEET 2 AB3 2 LYS B 364 SER B 365 -1 O LYS B 364 N GLU B 361 CRYST1 56.499 91.170 213.570 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017699 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004682 0.00000