HEADER OXIDOREDUCTASE 25-JUL-23 8PYA TITLE ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE, O2, ACDV OR THIOALDEHYDE TITLE 2 AFTER 4S O2 EXPOSURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOPENICILLIN N SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IPNS; COMPND 5 EC: 1.21.3.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: IPNA, IPS, AN2622; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NM554; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS ISOPENICILLIN N SYNTHASE, PENICILLINS, BIOSYNTHESIS, 2OG OXYGENASES, KEYWDS 2 ANTIBIOTIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.RABE,C.J.SCHOFIELD REVDAT 1 07-AUG-24 8PYA 0 JRNL AUTH P.RABE,C.J.SCHOFIELD JRNL TITL ISOPENICILLIN N SYNTHASE IN COMPLEX WITH FE, O2, ACDV OR JRNL TITL 2 THIOALDEHYDE AFTER 4S O2 EXPOSURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.4800 - 3.6100 1.00 3808 153 0.1435 0.1681 REMARK 3 2 3.6100 - 2.8700 1.00 3637 145 0.1567 0.1716 REMARK 3 3 2.8700 - 2.5100 1.00 3611 144 0.1794 0.2288 REMARK 3 4 2.5100 - 2.2800 1.00 3589 143 0.1768 0.2117 REMARK 3 5 2.2800 - 2.1100 1.00 3564 144 0.1743 0.1998 REMARK 3 6 2.1100 - 1.9900 1.00 3551 142 0.1815 0.2015 REMARK 3 7 1.9900 - 1.8900 1.00 3566 142 0.1987 0.2472 REMARK 3 8 1.8900 - 1.8100 1.00 3534 141 0.2143 0.2544 REMARK 3 9 1.8100 - 1.7400 1.00 3541 142 0.2210 0.2533 REMARK 3 10 1.7400 - 1.6800 1.00 3530 142 0.2294 0.2393 REMARK 3 11 1.6800 - 1.6300 1.00 3525 141 0.2490 0.2781 REMARK 3 12 1.6300 - 1.5800 1.00 3546 141 0.2822 0.2551 REMARK 3 13 1.5800 - 1.5400 1.00 3493 140 0.3208 0.3140 REMARK 3 14 1.5400 - 1.5000 0.99 3481 140 0.3725 0.4272 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.503 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2804 REMARK 3 ANGLE : 1.064 3831 REMARK 3 CHIRALITY : 0.073 402 REMARK 3 PLANARITY : 0.010 510 REMARK 3 DIHEDRAL : 11.688 1012 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1158 -3.1107 15.5412 REMARK 3 T TENSOR REMARK 3 T11: 0.0991 T22: 0.1534 REMARK 3 T33: 0.1200 T12: -0.0240 REMARK 3 T13: 0.0220 T23: 0.0383 REMARK 3 L TENSOR REMARK 3 L11: 3.0741 L22: 5.3742 REMARK 3 L33: 6.8769 L12: 0.3474 REMARK 3 L13: 0.8862 L23: 3.1394 REMARK 3 S TENSOR REMARK 3 S11: 0.0635 S12: -0.2326 S13: 0.0472 REMARK 3 S21: 0.1823 S22: -0.1501 S23: 0.1138 REMARK 3 S31: 0.0328 S32: -0.3712 S33: 0.1151 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6174 0.7590 -2.3535 REMARK 3 T TENSOR REMARK 3 T11: 0.1559 T22: 0.2085 REMARK 3 T33: 0.2013 T12: -0.0051 REMARK 3 T13: -0.0329 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.5546 L22: 1.0964 REMARK 3 L33: 3.2028 L12: -0.1556 REMARK 3 L13: -0.2806 L23: -0.4504 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: 0.1916 S13: 0.1471 REMARK 3 S21: -0.0989 S22: 0.1479 S23: 0.2465 REMARK 3 S31: -0.2760 S32: -0.5309 S33: -0.1062 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2714 6.6614 -24.3684 REMARK 3 T TENSOR REMARK 3 T11: 0.2566 T22: 0.1952 REMARK 3 T33: 0.1574 T12: -0.0157 REMARK 3 T13: -0.0184 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 7.8031 L22: 4.7908 REMARK 3 L33: 7.2596 L12: 0.0144 REMARK 3 L13: -0.2216 L23: 1.2995 REMARK 3 S TENSOR REMARK 3 S11: 0.0324 S12: 0.1577 S13: 0.0299 REMARK 3 S21: -0.1407 S22: 0.0481 S23: 0.2358 REMARK 3 S31: -0.4329 S32: -0.2166 S33: -0.0655 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0050 6.3597 -15.1181 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1568 REMARK 3 T33: 0.1261 T12: -0.0056 REMARK 3 T13: 0.0149 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 2.4321 L22: 6.4719 REMARK 3 L33: 1.8040 L12: 1.9416 REMARK 3 L13: 0.2721 L23: 0.1199 REMARK 3 S TENSOR REMARK 3 S11: -0.1092 S12: 0.2677 S13: 0.0571 REMARK 3 S21: -0.3094 S22: 0.1128 S23: 0.0387 REMARK 3 S31: -0.3691 S32: 0.1728 S33: -0.0182 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4620 15.4347 -13.0367 REMARK 3 T TENSOR REMARK 3 T11: 0.4363 T22: 0.1973 REMARK 3 T33: 0.1586 T12: -0.0029 REMARK 3 T13: 0.0227 T23: 0.0576 REMARK 3 L TENSOR REMARK 3 L11: 4.9265 L22: 3.0315 REMARK 3 L33: 2.2989 L12: 1.5285 REMARK 3 L13: 0.1627 L23: 0.4092 REMARK 3 S TENSOR REMARK 3 S11: -0.1573 S12: 0.4070 S13: 0.3364 REMARK 3 S21: -0.0252 S22: 0.1267 S23: 0.0482 REMARK 3 S31: -1.0535 S32: 0.0669 S33: 0.0467 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1783 9.0814 2.9221 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.1126 REMARK 3 T33: 0.1564 T12: 0.0228 REMARK 3 T13: 0.0362 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.0126 L22: 3.7999 REMARK 3 L33: 8.6213 L12: -2.0199 REMARK 3 L13: 3.1387 L23: -3.8981 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: -0.0642 S13: 0.1768 REMARK 3 S21: -0.0498 S22: -0.0009 S23: 0.0492 REMARK 3 S31: -0.5504 S32: -0.3669 S33: -0.0084 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0112 10.4320 8.1821 REMARK 3 T TENSOR REMARK 3 T11: 0.2624 T22: 0.1920 REMARK 3 T33: 0.1989 T12: -0.0708 REMARK 3 T13: 0.0180 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 0.8533 L22: 2.5929 REMARK 3 L33: 6.9153 L12: 0.1019 REMARK 3 L13: 0.5473 L23: -2.8462 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.1138 S13: 0.1750 REMARK 3 S21: 0.2837 S22: -0.0488 S23: -0.1005 REMARK 3 S31: -1.1251 S32: 0.5778 S33: 0.0716 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 295 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.2244 -7.0979 -3.3399 REMARK 3 T TENSOR REMARK 3 T11: 0.1066 T22: 0.1157 REMARK 3 T33: 0.1448 T12: -0.0113 REMARK 3 T13: 0.0149 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 1.3874 L22: 1.3515 REMARK 3 L33: 2.5537 L12: 0.1074 REMARK 3 L13: 0.3131 L23: 0.1494 REMARK 3 S TENSOR REMARK 3 S11: 0.0200 S12: 0.0300 S13: -0.1124 REMARK 3 S21: -0.1010 S22: 0.0222 S23: 0.0007 REMARK 3 S31: 0.0331 S32: 0.0871 S33: -0.0421 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 296 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3484 -1.7487 14.1524 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.5871 REMARK 3 T33: 0.3088 T12: -0.0161 REMARK 3 T13: -0.0637 T23: 0.0515 REMARK 3 L TENSOR REMARK 3 L11: 5.3244 L22: 5.0260 REMARK 3 L33: 2.3817 L12: 3.1507 REMARK 3 L13: -3.4762 L23: -1.5369 REMARK 3 S TENSOR REMARK 3 S11: 0.2094 S12: -0.5045 S13: -0.3232 REMARK 3 S21: 0.2935 S22: -0.2645 S23: -0.2632 REMARK 3 S31: 0.1942 S32: 1.5612 S33: 0.1002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7536 -1.0553 -8.4031 REMARK 3 T TENSOR REMARK 3 T11: 0.3252 T22: 0.3929 REMARK 3 T33: 0.2709 T12: -0.0130 REMARK 3 T13: 0.0085 T23: 0.0451 REMARK 3 L TENSOR REMARK 3 L11: 5.0827 L22: 4.7432 REMARK 3 L33: 7.1955 L12: 4.1859 REMARK 3 L13: 4.7708 L23: 5.2754 REMARK 3 S TENSOR REMARK 3 S11: -0.1568 S12: 0.7128 S13: -0.1625 REMARK 3 S21: -0.6965 S22: 0.2920 S23: -0.0372 REMARK 3 S31: 0.0439 S32: 0.6935 S33: -0.1852 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8PYA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1292129093. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-21 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : FREE ELECTRON LASER REMARK 200 BEAMLINE : MFX REMARK 200 X-RAY GENERATOR MODEL : SLAC LCLS BEAMLINE MFX REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.300289 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX340-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : CCTBX.XFEL.MERGE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52007 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 22.480 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 161.6 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9860 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.63 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.578 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE MORPHOLOGY, 3 UM X 3 UM X 60-80 UM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M LI2SO4, 0.1 M TRIS PH 8.5, BATCH REMARK 280 MODE, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.85050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.85550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.58950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.85550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.85050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.58950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 4 CG1 REMARK 470 ARG A 53 CZ NH1 NH2 REMARK 470 LYS A 57 CE NZ REMARK 470 LYS A 59 CE NZ REMARK 470 ARG A 76 NE CZ NH1 NH2 REMARK 470 LYS A 80 CD CE NZ REMARK 470 ASP A 84 OD2 REMARK 470 LYS A 120 CD CE NZ REMARK 470 LYS A 134 CD CE NZ REMARK 470 ASN A 169 ND2 REMARK 470 ARG A 173 NE CZ NH1 NH2 REMARK 470 LYS A 176 NZ REMARK 470 GLU A 197 CD OE1 OE2 REMARK 470 LYS A 201 CE NZ REMARK 470 LYS A 208 CE NZ REMARK 470 GLU A 243 CD OE1 OE2 REMARK 470 LYS A 266 CD CE NZ REMARK 470 ASN A 303 ND2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ASP A 307 OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 38 -111.28 -101.03 REMARK 500 HIS A 82 61.74 -101.88 REMARK 500 LYS A 97 -42.67 -134.02 REMARK 500 THR A 123 -4.24 79.67 REMARK 500 ASN A 230 -26.86 -153.28 REMARK 500 LEU A 288 -158.04 -88.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ACV A 403 REMARK 610 IO0 A 406 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 214 NE2 REMARK 620 2 ASP A 216 OD1 97.8 REMARK 620 3 HIS A 270 NE2 85.7 94.2 REMARK 620 4 ACV A 403 S17 93.0 81.9 175.7 REMARK 620 5 OXY A 404 O1 83.4 167.0 98.8 85.1 REMARK 620 6 OXY A 404 O1 89.8 169.0 94.2 89.9 8.2 REMARK 620 7 OXY A 404 O2 87.2 141.4 124.4 59.6 25.6 30.6 REMARK 620 8 HOH A 547 O 171.1 90.7 91.2 90.7 88.8 82.1 87.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZAE RELATED DB: PDB DBREF 8PYA A 1 331 UNP P05326 IPNS_EMENI 1 331 SEQRES 1 A 331 MET GLY SER VAL SER LYS ALA ASN VAL PRO LYS ILE ASP SEQRES 2 A 331 VAL SER PRO LEU PHE GLY ASP ASP GLN ALA ALA LYS MET SEQRES 3 A 331 ARG VAL ALA GLN GLN ILE ASP ALA ALA SER ARG ASP THR SEQRES 4 A 331 GLY PHE PHE TYR ALA VAL ASN HIS GLY ILE ASN VAL GLN SEQRES 5 A 331 ARG LEU SER GLN LYS THR LYS GLU PHE HIS MET SER ILE SEQRES 6 A 331 THR PRO GLU GLU LYS TRP ASP LEU ALA ILE ARG ALA TYR SEQRES 7 A 331 ASN LYS GLU HIS GLN ASP GLN VAL ARG ALA GLY TYR TYR SEQRES 8 A 331 LEU SER ILE PRO GLY LYS LYS ALA VAL GLU SER PHE CYS SEQRES 9 A 331 TYR LEU ASN PRO ASN PHE THR PRO ASP HIS PRO ARG ILE SEQRES 10 A 331 GLN ALA LYS THR PRO THR HIS GLU VAL ASN VAL TRP PRO SEQRES 11 A 331 ASP GLU THR LYS HIS PRO GLY PHE GLN ASP PHE ALA GLU SEQRES 12 A 331 GLN TYR TYR TRP ASP VAL PHE GLY LEU SER SER ALA LEU SEQRES 13 A 331 LEU LYS GLY TYR ALA LEU ALA LEU GLY LYS GLU GLU ASN SEQRES 14 A 331 PHE PHE ALA ARG HIS PHE LYS PRO ASP ASP THR LEU ALA SEQRES 15 A 331 SER VAL VAL LEU ILE ARG TYR PRO TYR LEU ASP PRO TYR SEQRES 16 A 331 PRO GLU ALA ALA ILE LYS THR ALA ALA ASP GLY THR LYS SEQRES 17 A 331 LEU SER PHE GLU TRP HIS GLU ASP VAL SER LEU ILE THR SEQRES 18 A 331 VAL LEU TYR GLN SER ASN VAL GLN ASN LEU GLN VAL GLU SEQRES 19 A 331 THR ALA ALA GLY TYR GLN ASP ILE GLU ALA ASP ASP THR SEQRES 20 A 331 GLY TYR LEU ILE ASN CYS GLY SER TYR MET ALA HIS LEU SEQRES 21 A 331 THR ASN ASN TYR TYR LYS ALA PRO ILE HIS ARG VAL LYS SEQRES 22 A 331 TRP VAL ASN ALA GLU ARG GLN SER LEU PRO PHE PHE VAL SEQRES 23 A 331 ASN LEU GLY TYR ASP SER VAL ILE ASP PRO PHE ASP PRO SEQRES 24 A 331 ARG GLU PRO ASN GLY LYS SER ASP ARG GLU PRO LEU SER SEQRES 25 A 331 TYR GLY ASP TYR LEU GLN ASN GLY LEU VAL SER LEU ILE SEQRES 26 A 331 ASN LYS ASN GLY GLN THR HET SO4 A 401 5 HET SO4 A 402 5 HET ACV A 403 21 HET OXY A 404 4 HET FE A 405 1 HET IO0 A 406 21 HETNAM SO4 SULFATE ION HETNAM ACV L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE HETNAM OXY OXYGEN MOLECULE HETNAM FE FE (III) ION HETNAM IO0 (2S)-2-AZANYL-6-[[(2R)-1-[[(2R)-3-METHYL-1-OXIDANYL-1- HETNAM 2 IO0 OXIDANYLIDENE-BUTAN-2-YL]AMINO]-1-OXIDANYLIDENE-3- HETNAM 3 IO0 SULFANYLIDENE-PROPAN-2-YL]AMINO]-6-OXIDANYLIDENE- HETNAM 4 IO0 HEXANOIC ACID HETSYN IO0 ACDV THIOALDEHYDE FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 ACV C14 H25 N3 O6 S FORMUL 5 OXY O2 FORMUL 6 FE FE 3+ FORMUL 7 IO0 C14 H23 N3 O6 S FORMUL 8 HOH *188(H2 O) HELIX 1 AA1 SER A 15 GLY A 19 5 5 HELIX 2 AA2 ASP A 21 ARG A 37 1 17 HELIX 3 AA3 ASN A 50 ILE A 65 1 16 HELIX 4 AA4 THR A 66 ALA A 74 1 9 HELIX 5 AA5 HIS A 114 ALA A 119 1 6 HELIX 6 AA6 GLY A 137 LEU A 164 1 28 HELIX 7 AA7 PHE A 171 PHE A 175 5 5 HELIX 8 AA8 PRO A 196 ILE A 200 5 5 HELIX 9 AA9 GLY A 254 THR A 261 1 8 HELIX 10 AB1 SER A 312 GLY A 329 1 18 SHEET 1 AA1 8 LYS A 11 ASP A 13 0 SHEET 2 AA1 8 PHE A 41 VAL A 45 1 O TYR A 43 N ILE A 12 SHEET 3 AA1 8 TYR A 249 CYS A 253 -1 O TYR A 249 N ALA A 44 SHEET 4 AA1 8 ILE A 220 GLN A 225 -1 N THR A 221 O ASN A 252 SHEET 5 AA1 8 ARG A 279 VAL A 286 -1 O LEU A 282 N TYR A 224 SHEET 6 AA1 8 SER A 183 TYR A 189 -1 N TYR A 189 O ARG A 279 SHEET 7 AA1 8 GLU A 101 TYR A 105 -1 N PHE A 103 O LEU A 186 SHEET 8 AA1 8 GLY A 89 TYR A 91 -1 N TYR A 91 O SER A 102 SHEET 1 AA2 5 LYS A 201 THR A 202 0 SHEET 2 AA2 5 LYS A 208 HIS A 214 -1 O LEU A 209 N LYS A 201 SHEET 3 AA2 5 HIS A 270 LYS A 273 -1 O VAL A 272 N SER A 210 SHEET 4 AA2 5 LEU A 231 THR A 235 -1 N GLN A 232 O ARG A 271 SHEET 5 AA2 5 GLY A 238 ASP A 241 -1 O GLN A 240 N VAL A 233 LINK NE2 HIS A 214 FE FE A 405 1555 1555 2.17 LINK OD1 ASP A 216 FE FE A 405 1555 1555 2.08 LINK NE2 HIS A 270 FE FE A 405 1555 1555 2.16 LINK S17AACV A 403 FE FE A 405 1555 1555 2.33 LINK O1 AOXY A 404 FE FE A 405 1555 1555 2.33 LINK O1 BOXY A 404 FE FE A 405 1555 1555 2.25 LINK O2 BOXY A 404 FE FE A 405 1555 1555 2.36 LINK FE FE A 405 O HOH A 547 1555 1555 2.14 CISPEP 1 ASP A 193 PRO A 194 0 -1.39 CRYST1 41.701 75.179 101.711 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009832 0.00000