HEADER ISOMERASE 12-APR-24 8Z27 TITLE THE STRUCTURE OF TGEV RBD AND DOG APN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE GLYCOPROTEIN; COMPND 3 CHAIN: a; COMPND 4 FRAGMENT: RBD DOMAIN; COMPND 5 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: AMINOPEPTIDASE N; COMPND 9 CHAIN: b; COMPND 10 SYNONYM: AP-N,CAPN,ALANYL AMINOPEPTIDASE,AMINOPEPTIDASE M,AP-M, COMPND 11 MICROSOMAL AMINOPEPTIDASE; COMPND 12 EC: 3.4.11.2; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TGEV VIRULENT PURDUE; SOURCE 3 ORGANISM_TAXID: 398812; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 9 ORGANISM_COMMON: DOG; SOURCE 10 ORGANISM_TAXID: 9615; SOURCE 11 GENE: ANPEP; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS TGEV, PROTEIN BINDING, ISOMERASE EXPDTA ELECTRON MICROSCOPY AUTHOR J.Q.SUN,S.NIU REVDAT 1 11-DEC-24 8Z27 0 JRNL AUTH J.Q.SUN JRNL TITL CROSS-SPECIES RECOGNITION OF TWO PORCINE CORONAVIRUSES TO JRNL TITL 2 THE AMINOPEPTIDASE N IN DOGS AND OTHER SPECIES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.860 REMARK 3 NUMBER OF PARTICLES : 295620 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8Z27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 15-APR-24. REMARK 100 THE DEPOSITION ID IS D_1300046750. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : THE PDCOV RBD-DAPN COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 0.00 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: a, b, A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR a 1 REMARK 465 ALA a 2 REMARK 465 ASN a 3 REMARK 465 LEU a 4 REMARK 465 ASN a 5 REMARK 465 ASN a 6 REMARK 465 GLY a 7 REMARK 465 PHE a 8 REMARK 465 TYR a 9 REMARK 465 PRO a 10 REMARK 465 VAL a 11 REMARK 465 SER a 12 REMARK 465 SER a 13 REMARK 465 SER a 14 REMARK 465 GLU a 15 REMARK 465 VAL a 16 REMARK 465 GLY a 17 REMARK 465 LEU a 18 REMARK 465 VAL a 19 REMARK 465 ASN a 20 REMARK 465 LYS a 21 REMARK 465 SER a 22 REMARK 465 VAL a 23 REMARK 465 VAL a 24 REMARK 465 LEU a 25 REMARK 465 LEU a 26 REMARK 465 ILE a 34 REMARK 465 GLU a 164 REMARK 465 GLY a 171 REMARK 465 VAL a 172 REMARK 465 PRO a 173 REMARK 465 SER a 174 REMARK 465 ASP a 175 REMARK 465 GLU b 36 REMARK 465 LYS b 37 REMARK 465 ASN b 38 REMARK 465 LYS b 39 REMARK 465 ASN b 40 REMARK 465 ALA b 41 REMARK 465 GLU b 42 REMARK 465 SER b 43 REMARK 465 SER b 44 REMARK 465 PRO b 45 REMARK 465 VAL b 46 REMARK 465 SER b 47 REMARK 465 SER b 48 REMARK 465 PRO b 49 REMARK 465 VAL b 50 REMARK 465 SER b 51 REMARK 465 SER b 52 REMARK 465 PRO b 53 REMARK 465 VAL b 54 REMARK 465 SER b 55 REMARK 465 SER b 56 REMARK 465 PRO b 57 REMARK 465 VAL b 58 REMARK 465 SER b 59 REMARK 465 PRO b 60 REMARK 465 THR b 61 REMARK 465 ASN b 62 REMARK 465 PRO b 63 REMARK 465 SER b 64 REMARK 465 THR b 65 REMARK 465 THR b 66 REMARK 465 ALA b 67 REMARK 465 ALA b 68 REMARK 465 THR b 69 REMARK 465 THR b 70 REMARK 465 LEU b 71 REMARK 465 ALA b 72 REMARK 465 GLN b 73 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP a 65 -126.66 52.70 REMARK 500 TRP a 91 -30.17 -167.28 REMARK 500 ASP a 101 -125.24 54.58 REMARK 500 THR a 126 -133.67 50.91 REMARK 500 PHE a 127 148.03 85.56 REMARK 500 ASN a 128 -51.72 -131.27 REMARK 500 GLN b 139 -128.37 54.65 REMARK 500 ALA b 220 -124.46 56.92 REMARK 500 ASN b 303 3.10 84.55 REMARK 500 ILE b 306 -109.37 -101.10 REMARK 500 ARG b 307 -177.36 69.44 REMARK 500 ASN b 469 -56.65 -129.43 REMARK 500 GLU b 499 -60.84 68.92 REMARK 500 VAL b 773 76.02 52.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-39743 RELATED DB: EMDB REMARK 900 THE STRUCTURE OF TGEV RBD AND DOG APN COMPLEX DBREF 8Z27 a 1 175 UNP Q0PKZ5 Q0PKZ5_CVPPU 497 671 DBREF 8Z27 b 36 975 UNP P79143 AMPN_CANLF 36 975 SEQADV 8Z27 GLY b 976 UNP P79143 EXPRESSION TAG SEQADV 8Z27 GLY b 977 UNP P79143 EXPRESSION TAG SEQADV 8Z27 SER b 978 UNP P79143 EXPRESSION TAG SEQRES 1 a 175 THR ALA ASN LEU ASN ASN GLY PHE TYR PRO VAL SER SER SEQRES 2 a 175 SER GLU VAL GLY LEU VAL ASN LYS SER VAL VAL LEU LEU SEQRES 3 a 175 PRO SER PHE TYR THR HIS THR ILE VAL ASN ILE THR ILE SEQRES 4 a 175 ASP LEU GLY MET LYS ARG SER GLY TYR GLY GLN PRO ILE SEQRES 5 a 175 ALA SER THR LEU SER ASN ILE THR LEU PRO MET GLN ASP SEQRES 6 a 175 ASN ASN THR ASP VAL TYR CYS ILE ARG SER ASP GLN PHE SEQRES 7 a 175 SER VAL TYR VAL HIS SER THR CYS LYS SER SER LEU TRP SEQRES 8 a 175 ASP ASN ILE PHE LYS ARG ASN CYS THR ASP VAL LEU ASP SEQRES 9 a 175 ALA THR ALA VAL ILE LYS THR GLY THR CYS PRO PHE SER SEQRES 10 a 175 PHE ASP LYS LEU ASN ASN TYR LEU THR PHE ASN LYS PHE SEQRES 11 a 175 CYS LEU SER LEU SER PRO VAL GLY ALA ASN CYS LYS PHE SEQRES 12 a 175 ASP VAL ALA ALA ARG THR ARG THR ASN GLU GLN VAL VAL SEQRES 13 a 175 ARG SER LEU TYR VAL ILE TYR GLU GLU GLY ASP ASN ILE SEQRES 14 a 175 VAL GLY VAL PRO SER ASP SEQRES 1 b 943 GLU LYS ASN LYS ASN ALA GLU SER SER PRO VAL SER SER SEQRES 2 b 943 PRO VAL SER SER PRO VAL SER SER PRO VAL SER PRO THR SEQRES 3 b 943 ASN PRO SER THR THR ALA ALA THR THR LEU ALA GLN SER SEQRES 4 b 943 LYS PRO TRP ASN HIS TYR ARG LEU PRO LYS THR LEU ILE SEQRES 5 b 943 PRO SER SER TYR ASN VAL THR LEU ARG PRO TYR LEU THR SEQRES 6 b 943 PRO ASN SER ASN GLY LEU TYR THR PHE LYS GLY SER SER SEQRES 7 b 943 THR VAL ARG PHE THR CYS LYS GLU SER THR SER MET ILE SEQRES 8 b 943 ILE ILE HIS SER LYS LYS LEU ASN TYR THR ASN ILE GLN SEQRES 9 b 943 GLY GLN ARG VAL ALA LEU ARG GLY VAL GLY GLY SER GLN SEQRES 10 b 943 ALA PRO ALA ILE ASP ARG THR GLU LEU VAL GLU VAL THR SEQRES 11 b 943 GLU TYR LEU VAL VAL HIS LEU ARG GLU PRO LEU GLN VAL SEQRES 12 b 943 ASN SER GLN TYR GLU MET ASP SER LYS PHE GLU GLY GLU SEQRES 13 b 943 LEU ALA ASP ASP LEU ALA GLY PHE TYR ARG SER GLU TYR SEQRES 14 b 943 THR GLU ASN GLY VAL LYS LYS VAL LEU ALA THR THR GLN SEQRES 15 b 943 MET GLN ALA ALA ASP ALA ARG LYS SER PHE PRO CYS PHE SEQRES 16 b 943 ASP GLU PRO ALA MET LYS ALA THR PHE ASN ILE THR LEU SEQRES 17 b 943 ILE HIS PRO SER ASN LEU VAL ALA LEU SER ASN MET LEU SEQRES 18 b 943 PRO ARG GLY PRO SER VAL PRO PHE THR GLU GLU PRO ASN SEQRES 19 b 943 TRP ASN VAL THR GLU PHE GLU THR THR PRO ILE MET SER SEQRES 20 b 943 THR TYR LEU LEU ALA TYR ILE VAL SER GLU PHE LYS ASN SEQRES 21 b 943 VAL GLN GLU ASN THR PRO SER ASN VAL LEU ILE ARG ILE SEQRES 22 b 943 TRP ALA ARG PRO SER ALA MET ASP GLN GLY HIS GLY ASN SEQRES 23 b 943 TYR ALA LEU ARG VAL THR GLY PRO ILE LEU ASP PHE PHE SEQRES 24 b 943 SER ARG HIS TYR ASP THR PRO TYR PRO LEU ASN LYS SER SEQRES 25 b 943 ASP GLN ILE ALA LEU PRO ASP PHE ASN ALA GLY ALA MET SEQRES 26 b 943 GLU ASN TRP GLY LEU VAL THR TYR ARG GLU SER ALA LEU SEQRES 27 b 943 LEU TYR ASP PRO GLN SER SER SER ILE GLY ASN LYS GLU SEQRES 28 b 943 ARG VAL VAL THR VAL ILE ALA HIS GLU LEU ALA HIS GLN SEQRES 29 b 943 TRP PHE GLY ASN LEU VAL THR LEU GLU TRP TRP ASN ASP SEQRES 30 b 943 LEU TRP LEU ASN GLU GLY PHE ALA SER TYR VAL GLU TYR SEQRES 31 b 943 LEU GLY ALA ASP TYR ALA GLU PRO THR TRP ASN LEU LYS SEQRES 32 b 943 ASP LEU ILE VAL LEU ASN GLU VAL TYR ARG VAL MET ALA SEQRES 33 b 943 VAL ASP ALA LEU ALA SER SER HIS PRO LEU SER SER PRO SEQRES 34 b 943 ALA SER GLU VAL ASN THR PRO ALA GLN ILE SER GLU VAL SEQRES 35 b 943 PHE ASP SER ILE SER TYR SER LYS GLY ALA SER VAL LEU SEQRES 36 b 943 ARG MET LEU SER SER PHE LEU THR GLU ASP LEU PHE LYS SEQRES 37 b 943 LYS GLY VAL ALA SER TYR LEU HIS THR PHE ALA TYR GLN SEQRES 38 b 943 ASN THR ILE TYR LEU ASP LEU TRP ASN HIS LEU GLN TRP SEQRES 39 b 943 ALA LEU GLY ASN GLN THR ALA ILE ASN LEU PRO TYR THR SEQRES 40 b 943 VAL ASN ALA ILE MET ASP ARG TRP ILE LEU GLN MET GLY SEQRES 41 b 943 PHE PRO VAL VAL THR VAL ASP THR THR THR GLY THR LEU SEQRES 42 b 943 SER GLN LYS HIS PHE LEU LEU ASP PRO GLN SER ASN VAL SEQRES 43 b 943 THR ARG PRO SER LYS PHE ASN TYR LEU TRP ILE ILE PRO SEQRES 44 b 943 ILE SER SER VAL LYS SER GLY THR GLN GLN ALA HIS TYR SEQRES 45 b 943 TRP MET PRO ASP ASN ALA LYS VAL GLN ASN ASP LEU PHE SEQRES 46 b 943 LYS THR THR GLY ASP GLU TRP VAL LEU LEU ASN LEU ASN SEQRES 47 b 943 VAL THR GLY TYR TYR LEU VAL ASN TYR ASP GLN ASN ASN SEQRES 48 b 943 TRP LYS LYS ILE HIS THR GLN LEU GLN THR ASP LEU SER SEQRES 49 b 943 VAL ILE PRO VAL ILE ASN ARG ALA GLN VAL ILE HIS ASP SEQRES 50 b 943 THR PHE ASP LEU ALA SER ALA GLN ILE VAL PRO VAL THR SEQRES 51 b 943 LEU ALA LEU ASN SER THR LEU PHE LEU ASN GLN GLU THR SEQRES 52 b 943 GLU TYR MET PRO TRP GLU ALA ALA LEU SER SER LEU SER SEQRES 53 b 943 TYR PHE LYS LEU MET PHE ASP ARG SER GLU VAL TYR GLY SEQRES 54 b 943 PRO MET LYS ASN TYR LEU ARG LYS GLN VAL THR PRO LEU SEQRES 55 b 943 PHE ASN HIS PHE GLU LYS ILE THR GLN ASN TRP THR ASP SEQRES 56 b 943 HIS PRO GLN THR LEU THR GLU GLN TYR ASN GLU ILE ASN SEQRES 57 b 943 ALA VAL SER THR ALA CYS THR TYR GLY VAL PRO LYS CYS SEQRES 58 b 943 LYS ASP LEU VAL SER THR LEU PHE ALA GLU TRP ARG LYS SEQRES 59 b 943 ASN PRO GLN ASN ASN PRO ILE TYR PRO ASN LEU ARG SER SEQRES 60 b 943 THR VAL TYR CYS ASN ALA ILE ALA GLN GLY GLY GLU GLU SEQRES 61 b 943 GLU TRP ASN PHE VAL TRP GLU GLN PHE ARG ASN THR SER SEQRES 62 b 943 LEU VAL ASN GLU ALA ASP LYS LEU ARG SER ALA LEU ALA SEQRES 63 b 943 CYS SER THR GLN VAL TRP ILE LEU ASN ARG TYR LEU SER SEQRES 64 b 943 TYR THR LEU ASN PRO GLU PHE ILE ARG LYS GLN ASP VAL SEQRES 65 b 943 ILE SER THR LEU SER SER ILE ALA SER ASN VAL ILE GLY SEQRES 66 b 943 GLN SER LEU ALA TRP ASP PHE ILE GLN SER ASN TRP LYS SEQRES 67 b 943 LYS LEU PHE GLU ASP TYR GLY THR GLY SER PHE SER PHE SEQRES 68 b 943 SER ASN LEU ILE GLN ALA VAL THR ARG ARG PHE SER THR SEQRES 69 b 943 GLU PHE GLU LEU GLN GLN LEU GLU GLN PHE LYS ALA ASN SEQRES 70 b 943 ASN MET ASP THR GLY PHE GLY SER GLY THR ARG ALA LEU SEQRES 71 b 943 GLU GLN ALA LEU GLU LYS THR LYS ALA ASN ILE LYS TRP SEQRES 72 b 943 VAL LYS GLU ASN LYS GLU ALA VAL LEU GLN TRP PHE ARG SEQRES 73 b 943 GLU ASN SER GLN GLY GLY SER HET NAG A 1 14 HET NAG A 2 14 HET BMA A 3 11 HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET FUC D 4 10 HET NAG E 1 14 HET NAG E 2 14 HET NAG a 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 3 NAG 11(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 6 FUC C6 H12 O5 HELIX 1 AA1 THR a 100 ASP a 104 5 5 HELIX 2 AA2 ALA b 220 PHE b 227 1 8 HELIX 3 AA3 ARG b 311 GLY b 318 1 8 HELIX 4 AA4 GLY b 320 ASP b 339 1 20 HELIX 5 AA5 GLU b 370 LEU b 374 1 5 HELIX 6 AA6 SER b 381 TRP b 400 1 20 HELIX 7 AA7 TRP b 409 ASN b 411 5 3 HELIX 8 AA8 ASP b 412 GLU b 432 1 21 HELIX 9 AA9 ASN b 436 GLU b 445 1 10 HELIX 10 AB1 GLU b 445 LEU b 455 1 11 HELIX 11 AB2 THR b 470 PHE b 478 1 9 HELIX 12 AB3 ASP b 479 LEU b 497 1 19 HELIX 13 AB4 GLU b 499 PHE b 513 1 15 HELIX 14 AB5 ILE b 519 GLN b 534 1 16 HELIX 15 AB6 THR b 542 GLN b 553 1 12 HELIX 16 AB7 ASN b 631 THR b 635 5 5 HELIX 17 AB8 ASP b 643 ASP b 657 1 15 HELIX 18 AB9 PRO b 662 ALA b 679 1 18 HELIX 19 AC1 PRO b 683 PHE b 693 1 11 HELIX 20 AC2 LEU b 694 GLN b 696 5 3 HELIX 21 AC3 GLU b 699 ASP b 718 1 20 HELIX 22 AC4 VAL b 722 THR b 745 1 24 HELIX 23 AC5 THR b 754 TYR b 771 1 18 HELIX 24 AC6 VAL b 773 LYS b 789 1 17 HELIX 25 AC7 LEU b 800 GLY b 812 1 13 HELIX 26 AC8 GLY b 813 THR b 827 1 15 HELIX 27 AC9 LEU b 829 ALA b 841 1 13 HELIX 28 AD1 GLN b 845 ASN b 858 1 14 HELIX 29 AD2 ARG b 863 ASN b 877 1 15 HELIX 30 AD3 ASN b 877 ASN b 891 1 15 HELIX 31 AD4 ASN b 891 GLY b 900 1 10 HELIX 32 AD5 SER b 905 VAL b 913 1 9 HELIX 33 AD6 THR b 919 ASN b 933 1 15 HELIX 34 AD7 SER b 940 ASN b 962 1 23 HELIX 35 AD8 ASN b 962 GLY b 977 1 16 SHEET 1 AA1 3 PRO a 51 ALA a 53 0 SHEET 2 AA1 3 THR a 38 ARG a 45 -1 N LYS a 44 O ILE a 52 SHEET 3 AA1 3 ILE a 59 THR a 60 -1 O THR a 60 N THR a 38 SHEET 1 AA2 4 PRO a 51 ALA a 53 0 SHEET 2 AA2 4 THR a 38 ARG a 45 -1 N LYS a 44 O ILE a 52 SHEET 3 AA2 4 HIS a 83 SER a 88 1 O THR a 85 N LEU a 41 SHEET 4 AA2 4 ARG a 97 ASN a 98 -1 O ARG a 97 N SER a 88 SHEET 1 AA3 3 THR a 106 ILE a 109 0 SHEET 2 AA3 3 CYS a 141 ARG a 148 -1 O ARG a 148 N THR a 106 SHEET 3 AA3 3 GLU a 153 VAL a 161 -1 O LEU a 159 N PHE a 143 SHEET 1 AA4 6 VAL b 143 ARG b 146 0 SHEET 2 AA4 6 GLN b 181 GLU b 191 -1 O ASP b 185 N ALA b 144 SHEET 3 AA4 6 THR b 108 CYS b 119 -1 N GLY b 111 O PHE b 188 SHEET 4 AA4 6 LEU b 86 PRO b 97 -1 N SER b 90 O ARG b 116 SHEET 5 AA4 6 THR b 238 PRO b 246 1 O THR b 242 N VAL b 93 SHEET 6 AA4 6 TRP b 270 GLU b 274 -1 O ASN b 271 N HIS b 245 SHEET 1 AA5 3 MET b 125 ILE b 128 0 SHEET 2 AA5 3 LEU b 168 HIS b 171 -1 O LEU b 168 N ILE b 128 SHEET 3 AA5 3 ARG b 158 LEU b 161 -1 N GLU b 160 O VAL b 169 SHEET 1 AA6 2 PHE b 199 GLU b 206 0 SHEET 2 AA6 2 VAL b 209 THR b 216 -1 O THR b 215 N TYR b 200 SHEET 1 AA7 2 VAL b 250 SER b 253 0 SHEET 2 AA7 2 TYR b 288 SER b 291 -1 O SER b 291 N VAL b 250 SHEET 1 AA8 4 LYS b 294 ASN b 295 0 SHEET 2 AA8 4 ILE b 308 ALA b 310 -1 O ALA b 310 N LYS b 294 SHEET 3 AA8 4 ASP b 348 LEU b 352 1 O ALA b 351 N TRP b 309 SHEET 4 AA8 4 LEU b 365 ARG b 369 1 O TYR b 368 N ILE b 350 SHEET 1 AA9 2 PHE b 401 GLY b 402 0 SHEET 2 AA9 2 VAL b 405 THR b 406 1 O VAL b 405 N GLY b 402 SHEET 1 AB1 4 LYS b 614 GLN b 616 0 SHEET 2 AB1 4 THR b 567 HIS b 572 -1 N LEU b 568 O VAL b 615 SHEET 3 AB1 4 PRO b 557 VAL b 561 -1 N THR b 560 O SER b 569 SHEET 4 AB1 4 LEU b 639 TYR b 642 1 O ASN b 641 N VAL b 559 SHEET 1 AB2 2 ILE b 593 ILE b 595 0 SHEET 2 AB2 2 TYR b 607 MET b 609 -1 O MET b 609 N ILE b 593 SHEET 1 AB3 3 THR b 602 GLN b 603 0 SHEET 2 AB3 3 VAL b 598 LYS b 599 -1 N LYS b 599 O THR b 602 SHEET 3 AB3 3 VAL b 628 LEU b 629 -1 O LEU b 629 N VAL b 598 SSBOND 1 CYS a 72 CYS a 131 1555 1555 2.03 SSBOND 2 CYS a 86 CYS a 99 1555 1555 2.03 SSBOND 3 CYS a 114 CYS a 141 1555 1555 2.03 SSBOND 4 CYS b 769 CYS b 776 1555 1555 2.04 SSBOND 5 CYS b 806 CYS b 842 1555 1555 2.04 LINK ND2 ASN a 58 C1 NAG A 1 1555 1555 1.44 LINK ND2 ASN a 98 C1 NAG a 201 1555 1555 1.43 LINK ND2 ASN b 533 C1 NAG B 1 1555 1555 1.44 LINK ND2 ASN b 633 C1 NAG C 1 1555 1555 1.43 LINK ND2 ASN b 689 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN b 747 C1 NAG D 1 1555 1555 1.43 LINK O4 NAG A 1 C1 NAG A 2 1555 1555 1.44 LINK O4 NAG A 2 C1 BMA A 3 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 4 1555 1555 1.44 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000