data_006
#
_chem_comp.id 006
_chem_comp.name
(4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C35 H41 N3 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms KNI-10006
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-07-03
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 631.782
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 006
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3FNU
_chem_comp.pdbx_subcomponent_list "DBA 005 00B 00X"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
006 N2 N2 N 0 1 N N N N N N -8.586 -50.791 -75.488 -2.428 0.132 -1.353 N 005 1
006 C20 C20 C 0 1 N N S N N N -7.689 -51.822 -74.952 -1.020 0.199 -0.951 CB1 005 2
006 O20 O20 O 0 1 N N N N N N -6.237 -51.177 -73.103 -0.265 -0.064 -3.231 OB2 005 3
006 C21 C21 C 0 1 N N N N N N -7.506 -52.856 -76.063 -0.514 -1.210 -0.633 CG 005 4
006 O21 O21 O 0 1 N N N N N N -6.746 -48.936 -75.065 2.066 0.111 -2.015 O 005 5
006 C22 C22 C 0 1 Y N N N N N -8.668 -53.826 -76.100 -1.247 -1.748 0.568 CD 005 6
006 C23 C23 C 0 1 Y N N N N N -8.734 -54.881 -75.181 -2.421 -2.459 0.400 CE1 005 7
006 C24 C24 C 0 1 Y N N N N N -9.806 -55.773 -75.219 -3.094 -2.952 1.503 CZ1 005 8
006 C25 C25 C 0 1 Y N N N N N -10.807 -55.608 -76.178 -2.593 -2.736 2.772 CH 005 9
006 C26 C26 C 0 1 Y N N N N N -10.740 -54.558 -77.097 -1.419 -2.026 2.940 CZ2 005 10
006 C27 C27 C 0 1 Y N N N N N -9.670 -53.665 -77.059 -0.743 -1.537 1.838 CE2 005 11
006 C28 C28 C 0 1 N N S N N N -6.326 -51.231 -74.538 -0.192 0.794 -2.091 CA 005 12
006 C29 C29 C 0 1 N N N N N N -5.967 -49.882 -75.139 1.244 0.925 -1.652 C 005 13
006 N30 N30 N 0 1 N N N N N N -5.024 -46.885 -78.142 4.851 0.705 0.240 N30 00X 14
006 O30 O30 O 0 1 N N N N N N -5.653 -45.257 -76.096 7.473 0.683 0.520 O30 00X 15
006 C31 C31 C 0 1 N N S N N N -4.093 -45.773 -77.936 5.362 -0.491 0.915 C31 00X 16
006 C32 C32 C 0 1 Y N N N N N -4.237 -44.815 -79.050 5.414 -1.657 -0.049 C32 00X 17
006 C33 C33 C 0 1 Y N N N N N -4.232 -45.125 -80.411 4.491 -2.088 -0.987 C33 00X 18
006 C34 C34 C 0 1 Y N N N N N -4.383 -44.069 -81.316 4.759 -3.195 -1.768 C34 00X 19
006 C35 C35 C 0 1 N N R N N N -4.391 -44.924 -76.684 6.822 -0.271 1.362 C35 00X 20
006 C36 C36 C 0 1 Y N N N N N -4.384 -43.524 -78.600 6.608 -2.336 0.104 C36 00X 21
006 C37 C37 C 0 1 Y N N N N N -4.534 -42.461 -79.489 6.875 -3.446 -0.680 C37 00X 22
006 C38 C38 C 0 1 Y N N N N N -4.529 -42.753 -80.857 5.952 -3.875 -1.615 C38 00X 23
006 C39 C39 C 0 1 N N N N N N -4.367 -43.443 -77.091 7.439 -1.674 1.182 C39 00X 24
006 C40 C40 C 0 1 Y N N N N N -14.432 -48.651 -78.957 -9.751 -0.087 -0.269 "C4'" DBA 25
006 O40 O40 O 0 1 N N N N N N -10.278 -51.226 -74.049 -3.104 0.191 0.759 O1 DBA 26
006 C41 C41 C 0 1 Y N N N N N -14.279 -49.966 -78.513 -9.026 -1.255 -0.121 "C3'" DBA 27
006 O41 O41 O 0 1 N N N N N N -10.951 -49.842 -76.967 -5.674 0.083 0.334 "O1'" DBA 28
006 C42 C42 C 0 1 Y N N N N N -13.119 -50.362 -77.846 -7.661 -1.201 0.080 "C2'" DBA 29
006 C43 C43 C 0 1 N N N N N N -12.996 -51.797 -77.387 -6.871 -2.474 0.241 CM2 DBA 30
006 C44 C44 C 0 1 N N N N N N -11.201 -47.063 -77.866 -7.051 2.533 0.045 CM6 DBA 31
006 C45 C45 C 0 1 Y N N N N N -12.101 -49.432 -77.617 -7.017 0.027 0.135 "C1'" DBA 32
006 C46 C46 C 0 1 Y N N N N N -12.260 -48.112 -78.072 -7.747 1.197 -0.014 "C6'" DBA 33
006 C47 C47 C 0 1 Y N N N N N -13.422 -47.724 -78.736 -9.112 1.138 -0.215 "C5'" DBA 34
006 C48 C48 C 0 1 N N N N N N -9.810 -50.590 -74.982 -3.397 0.135 -0.416 C1 DBA 35
006 C49 C49 C 0 1 N N N N N N -10.648 -49.505 -75.612 -4.845 0.067 -0.830 C2 DBA 36
006 C50 C50 C 0 1 N N N N N N -3.807 -50.920 -75.819 0.645 2.915 -0.306 CD 00B 37
006 N50 N50 N 0 1 N N N N N N -4.756 -49.805 -75.731 1.615 1.949 -0.857 N 00B 38
006 O50 O50 O 0 1 N N N N N N -5.994 -48.840 -77.943 2.757 0.182 0.752 O 00B 39
006 S50 S50 S 0 1 N N N N N N -2.220 -50.199 -75.976 1.500 3.528 1.204 SG3 00B 40
006 C51 C51 C 0 1 N N N N N N -2.690 -48.615 -76.561 3.180 3.396 0.459 CB 00B 41
006 C52 C52 C 0 1 N N N N N N -1.994 -47.578 -75.679 3.530 4.656 -0.335 CG1 00B 42
006 C53 C53 C 0 1 N N N N N N -2.211 -48.527 -78.011 4.235 3.112 1.530 CG2 00B 43
006 C54 C54 C 0 1 N N R N N N -4.239 -48.551 -76.360 3.001 2.181 -0.479 CA 00B 44
006 C55 C55 C 0 1 N N N N N N -5.113 -48.091 -77.542 3.526 0.951 0.215 C 00B 45
006 HN2 HN2 H 0 1 N N N N N N -8.275 -50.224 -76.251 -2.662 0.091 -2.293 HN 005 46
006 H20 H20 H 0 1 N N N N N N -8.121 -52.272 -74.046 -0.925 0.827 -0.065 HB1 005 47
006 HO20 HO20 H 0 0 N N N N N N -5.397 -50.813 -72.851 0.068 -0.958 -3.073 HA 005 48
006 H21 H21 H 0 1 N N N N N N -7.445 -52.335 -77.030 -0.691 -1.861 -1.489 HG 005 49
006 H21A H21A H 0 0 N N N N N N -6.578 -53.417 -75.879 0.554 -1.172 -0.420 HGA 005 50
006 H23 H23 H 0 1 N N N N N N -7.955 -55.004 -74.443 -2.813 -2.628 -0.592 HE1 005 51
006 H24 H24 H 0 1 N N N N N N -9.861 -56.586 -74.511 -4.011 -3.507 1.371 HZ1 005 52
006 H25 H25 H 0 1 N N N N N N -11.638 -56.296 -76.210 -3.118 -3.121 3.634 HH 005 53
006 H26 H26 H 0 1 N N N N N N -11.517 -54.438 -77.837 -1.027 -1.856 3.932 HZ2 005 54
006 H27 H27 H 0 1 N N N N N N -9.616 -52.852 -77.768 0.175 -0.982 1.969 HE2 005 55
006 H28 H28 H 0 1 N N N N N N -5.581 -51.920 -74.962 -0.584 1.777 -2.350 HOB2 005 56
006 HN30 HN30 H 0 0 N N N N N N -5.712 -46.723 -78.849 5.466 1.319 -0.189 HN30 00X 57
006 HO30 HO30 H 0 0 N N N N N N -5.799 -44.714 -75.330 8.394 0.856 0.760 HO30 00X 58
006 H31 H31 H 0 1 N N N N N N -3.103 -46.244 -77.847 4.736 -0.736 1.773 H31 00X 59
006 H33 H33 H 0 1 N N N N N N -4.116 -46.143 -80.753 3.558 -1.558 -1.107 H33 00X 60
006 H34 H34 H 0 1 N N N N N N -4.387 -44.270 -82.377 4.036 -3.529 -2.498 H34 00X 61
006 H35 H35 H 0 1 N N N N N N -3.623 -45.130 -75.924 6.865 0.043 2.405 H35 00X 62
006 H37 H37 H 0 1 N N N N N N -4.650 -41.448 -79.134 7.808 -3.977 -0.561 H37 00X 63
006 H38 H38 H 0 1 N N N N N N -4.640 -41.951 -81.572 6.164 -4.741 -2.225 H38 00X 64
006 H39 H39 H 0 1 N N N N N N -5.236 -42.895 -76.699 8.478 -1.592 0.861 H39 00X 65
006 H39A H39A H 0 0 N N N N N N -3.470 -42.928 -76.717 7.373 -2.239 2.111 H39A 00X 66
006 H40 H40 H 0 1 N N N N N N -15.334 -48.355 -79.471 -10.818 -0.132 -0.431 "H4'" DBA 67
006 H41 H41 H 0 1 N N N N N N -15.067 -50.684 -78.688 -9.528 -2.211 -0.164 "H3'" DBA 68
006 H43 H43 H 0 1 N N N N N N -12.531 -52.398 -78.182 -6.529 -2.816 -0.736 HM21 DBA 69
006 H43A H43A H 0 0 N N N N N N -12.372 -51.840 -76.482 -6.010 -2.289 0.883 HM22 DBA 70
006 H43B H43B H 0 0 N N N N N N -13.996 -52.197 -77.162 -7.503 -3.239 0.693 HM23 DBA 71
006 H44 H44 H 0 1 N N N N N N -10.510 -47.066 -78.722 -6.731 2.820 -0.956 HM61 DBA 72
006 H44A H44A H 0 0 N N N N N N -11.676 -46.074 -77.782 -7.737 3.283 0.437 HM62 DBA 73
006 H44B H44B H 0 0 N N N N N N -10.643 -47.282 -76.944 -6.180 2.460 0.698 HM63 DBA 74
006 H47 H47 H 0 1 N N N N N N -13.537 -46.706 -79.078 -9.681 2.049 -0.331 "H5'" DBA 75
006 H49 H49 H 0 1 N N N N N N -10.090 -48.557 -75.590 -5.020 -0.853 -1.388 H21 DBA 76
006 H49A H49A H 0 0 N N N N N N -11.585 -49.397 -75.047 -5.083 0.924 -1.459 H22 DBA 77
006 H50 H50 H 0 1 N N N N N N -4.033 -51.552 -76.691 0.469 3.729 -1.009 HD 00B 78
006 H50A H50A H 0 0 N N N N N N -3.860 -51.545 -74.915 -0.291 2.419 -0.049 HDA 00B 79
006 H52 H52 H 0 1 N N N N N N -2.266 -46.567 -76.017 3.535 5.517 0.334 HG1 00B 80
006 H52A H52A H 0 0 N N N N N N -2.311 -47.713 -74.634 4.516 4.540 -0.784 HG1A 00B 81
006 H52B H52B H 0 0 N N N N N N -0.904 -47.708 -75.751 2.789 4.809 -1.119 HG1B 00B 82
006 H53 H53 H 0 1 N N N N N N -2.482 -47.546 -78.428 3.986 2.187 2.049 HG2 00B 83
006 H53A H53A H 0 0 N N N N N N -1.118 -48.650 -78.044 5.213 3.013 1.059 HG2A 00B 84
006 H53B H53B H 0 0 N N N N N N -2.688 -49.322 -78.603 4.258 3.935 2.245 HG2B 00B 85
006 H54 H54 H 0 1 N N N N N N -4.352 -47.704 -75.667 3.587 2.346 -1.383 HA 00B 86
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
006 N2 C48 SING N N 1
006 N2 C20 SING N N 2
006 N2 HN2 SING N N 3
006 C21 C20 SING N N 4
006 C20 C28 SING N N 5
006 C20 H20 SING N N 6
006 C28 O20 SING N N 7
006 O20 HO20 SING N N 8
006 C22 C21 SING N N 9
006 C21 H21 SING N N 10
006 C21 H21A SING N N 11
006 C29 O21 DOUB N N 12
006 C27 C22 DOUB Y N 13
006 C22 C23 SING Y N 14
006 C24 C23 DOUB Y N 15
006 C23 H23 SING N N 16
006 C25 C24 SING Y N 17
006 C24 H24 SING N N 18
006 C26 C25 DOUB Y N 19
006 C25 H25 SING N N 20
006 C26 C27 SING Y N 21
006 C26 H26 SING N N 22
006 C27 H27 SING N N 23
006 C29 C28 SING N N 24
006 C28 H28 SING N N 25
006 N50 C29 SING N N 26
006 N30 C31 SING N N 27
006 N30 C55 SING N N 28
006 N30 HN30 SING N N 29
006 C35 O30 SING N N 30
006 O30 HO30 SING N N 31
006 C32 C31 SING N N 32
006 C31 C35 SING N N 33
006 C31 H31 SING N N 34
006 C33 C32 DOUB Y N 35
006 C32 C36 SING Y N 36
006 C34 C33 SING Y N 37
006 C33 H33 SING N N 38
006 C34 C38 DOUB Y N 39
006 C34 H34 SING N N 40
006 C39 C35 SING N N 41
006 C35 H35 SING N N 42
006 C37 C36 DOUB Y N 43
006 C36 C39 SING N N 44
006 C38 C37 SING Y N 45
006 C37 H37 SING N N 46
006 C38 H38 SING N N 47
006 C39 H39 SING N N 48
006 C39 H39A SING N N 49
006 C40 C47 DOUB Y N 50
006 C40 C41 SING Y N 51
006 C40 H40 SING N N 52
006 C48 O40 DOUB N N 53
006 C41 C42 DOUB Y N 54
006 C41 H41 SING N N 55
006 C45 O41 SING N N 56
006 O41 C49 SING N N 57
006 C42 C45 SING Y N 58
006 C42 C43 SING N N 59
006 C43 H43 SING N N 60
006 C43 H43A SING N N 61
006 C43 H43B SING N N 62
006 C46 C44 SING N N 63
006 C44 H44 SING N N 64
006 C44 H44A SING N N 65
006 C44 H44B SING N N 66
006 C46 C45 DOUB Y N 67
006 C47 C46 SING Y N 68
006 C47 H47 SING N N 69
006 C49 C48 SING N N 70
006 C49 H49 SING N N 71
006 C49 H49A SING N N 72
006 S50 C50 SING N N 73
006 C50 N50 SING N N 74
006 C50 H50 SING N N 75
006 C50 H50A SING N N 76
006 C54 N50 SING N N 77
006 O50 C55 DOUB N N 78
006 C51 S50 SING N N 79
006 C53 C51 SING N N 80
006 C51 C54 SING N N 81
006 C51 C52 SING N N 82
006 C52 H52 SING N N 83
006 C52 H52A SING N N 84
006 C52 H52B SING N N 85
006 C53 H53 SING N N 86
006 C53 H53A SING N N 87
006 C53 H53B SING N N 88
006 C55 C54 SING N N 89
006 C54 H54 SING N N 90
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
006 SMILES ACDLabs 12.01 O=C(NC2c1ccccc1CC2O)C5N(C(=O)C(O)C(NC(=O)COc3c(cccc3C)C)Cc4ccccc4)CSC5(C)C
006 SMILES_CANONICAL CACTVS 3.370 Cc1cccc(C)c1OCC(=O)N[C@@H](Cc2ccccc2)[C@H](O)C(=O)N3CSC(C)(C)[C@H]3C(=O)N[C@@H]4[C@H](O)Cc5ccccc45
006 SMILES CACTVS 3.370 Cc1cccc(C)c1OCC(=O)N[CH](Cc2ccccc2)[CH](O)C(=O)N3CSC(C)(C)[CH]3C(=O)N[CH]4[CH](O)Cc5ccccc45
006 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 Cc1cccc(c1OCC(=O)N[C@@H](Cc2ccccc2)[C@@H](C(=O)N3CSC([C@H]3C(=O)N[C@H]4c5ccccc5C[C@H]4O)(C)C)O)C
006 SMILES "OpenEye OEToolkits" 1.7.0 Cc1cccc(c1OCC(=O)NC(Cc2ccccc2)C(C(=O)N3CSC(C3C(=O)NC4c5ccccc5CC4O)(C)C)O)C
006 InChI InChI 1.03 InChI=1S/C35H41N3O6S/c1-21-11-10-12-22(2)31(21)44-19-28(40)36-26(17-23-13-6-5-7-14-23)30(41)34(43)38-20-45-35(3,4)32(38)33(42)37-29-25-16-9-8-15-24(25)18-27(29)39/h5-16,26-27,29-30,32,39,41H,17-20H2,1-4H3,(H,36,40)(H,37,42)/t26-,27+,29-,30-,32+/m0/s1
006 InChIKey InChI 1.03 KKTYZYHUPKXLPL-RIQJEONASA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
006 "SYSTEMATIC NAME" ACDLabs 12.01 (4R)-3-[(2S,3S)-3-{[(2,6-dimethylphenoxy)acetyl]amino}-2-hydroxy-4-phenylbutanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide
006 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (4R)-3-[(2S,3S)-3-[2-(2,6-dimethylphenoxy)ethanoylamino]-2-hydroxy-4-phenyl-butanoyl]-N-[(1S,2R)-2-hydroxy-2,3-dihydro-1H-inden-1-yl]-5,5-dimethyl-1,3-thiazolidine-4-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
006 'Create component' 2008-07-03 RCSB
006 'Modify aromatic_flag' 2011-06-04 RCSB
006 'Modify descriptor' 2011-06-04 RCSB
006 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 006
_pdbx_chem_comp_synonyms.name KNI-10006
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 006
_pdbe_chem_comp_synonyms.name KNI-10006
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
006 N2 N 7.505 0.946 1
006 C20 C 8.252 -0.354 2
006 O20 O 10.505 0.941 3
006 C21 C 7.500 -1.652 4
006 O21 O 9.748 -2.955 5
006 C22 C 6.000 -1.649 6
006 C23 C 5.248 -2.947 7
006 C24 C 3.748 -2.945 8
006 C25 C 3.000 -1.644 9
006 C26 C 3.752 -0.346 10
006 C27 C 5.252 -0.349 11
006 C28 C 9.752 -0.357 12
006 C29 C 10.500 -1.657 13
006 N30 N 10.946 -4.610 14
006 O30 O 12.855 -7.243 15
006 C31 C 10.480 -6.036 16
006 C32 C 9.060 -6.493 17
006 C33 C 7.761 -5.743 18
006 C34 C 6.463 -6.493 19
006 C35 C 11.355 -7.243 20
006 C36 C 9.060 -7.993 21
006 C37 C 7.761 -8.743 22
006 C38 C 6.463 -7.993 23
006 C39 C 10.480 -8.450 24
006 C40 C 6.018 8.743 25
006 O40 O 9.757 2.241 26
006 C41 C 7.518 8.740 27
006 O41 O 8.261 4.842 28
006 C42 C 8.266 7.440 29
006 C43 C 9.766 7.437 30
006 C44 C 5.261 4.847 31
006 C45 C 7.513 6.142 32
006 C46 C 6.013 6.145 33
006 C47 C 5.266 7.445 34
006 C48 C 8.257 2.244 35
006 C49 C 7.509 3.544 36
006 C50 C 12.884 -0.448 37
006 N50 N 12.000 -1.660 38
006 O50 O 13.415 -5.417 39
006 S50 S 14.309 -0.914 40
006 C51 C 14.307 -2.414 41
006 C52 C 14.768 -3.841 42
006 C53 C 15.807 -2.416 43
006 C54 C 12.880 -2.875 44
006 C55 C 12.414 -4.301 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
006 N2 C48 SINGLE NONE 1
006 N2 C20 SINGLE NONE 2
006 C20 C21 SINGLE BEGINDASH 3
006 C20 C28 SINGLE NONE 4
006 C28 O20 SINGLE BEGINDASH 5
006 C22 C21 SINGLE NONE 6
006 C29 O21 DOUBLE NONE 7
006 C27 C22 SINGLE NONE 8
006 C22 C23 DOUBLE NONE 9
006 C24 C23 SINGLE NONE 10
006 C25 C24 DOUBLE NONE 11
006 C26 C25 SINGLE NONE 12
006 C26 C27 DOUBLE NONE 13
006 C29 C28 SINGLE NONE 14
006 N50 C29 SINGLE NONE 15
006 C31 N30 SINGLE BEGINDASH 16
006 N30 C55 SINGLE NONE 17
006 C35 O30 SINGLE BEGINDASH 18
006 C32 C31 SINGLE NONE 19
006 C31 C35 SINGLE NONE 20
006 C33 C32 DOUBLE NONE 21
006 C32 C36 SINGLE NONE 22
006 C34 C33 SINGLE NONE 23
006 C34 C38 DOUBLE NONE 24
006 C39 C35 SINGLE NONE 25
006 C37 C36 DOUBLE NONE 26
006 C36 C39 SINGLE NONE 27
006 C38 C37 SINGLE NONE 28
006 C40 C47 DOUBLE NONE 29
006 C40 C41 SINGLE NONE 30
006 C48 O40 DOUBLE NONE 31
006 C41 C42 DOUBLE NONE 32
006 C45 O41 SINGLE NONE 33
006 O41 C49 SINGLE NONE 34
006 C42 C45 SINGLE NONE 35
006 C42 C43 SINGLE NONE 36
006 C46 C44 SINGLE NONE 37
006 C46 C45 DOUBLE NONE 38
006 C47 C46 SINGLE NONE 39
006 C49 C48 SINGLE NONE 40
006 S50 C50 SINGLE NONE 41
006 C50 N50 SINGLE NONE 42
006 C54 N50 SINGLE NONE 43
006 O50 C55 DOUBLE NONE 44
006 C51 S50 SINGLE NONE 45
006 C53 C51 SINGLE NONE 46
006 C51 C54 SINGLE NONE 47
006 C51 C52 SINGLE NONE 48
006 C54 C55 SINGLE BEGINWEDGE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
006 MurckoScaffold S1 scaffold 'O=C(COc1ccccc1)N[C@H](CC(=O)N1CSC[C@H]1C(=O)N[C@@H]1CCc2ccccc21)Cc1ccccc1' InChI=1S/C31H33N3O4S/c35-29(19-38-25-12-5-2-6-13-25)32-24(17-22-9-3-1-4-10-22)18-30(36)34-21-39-20-28(34)31(37)33-27-16-15-23-11-7-8-14-26(23)27/h1-14,24,27-28H,15-21H2,(H,32,35)(H,33,37)/t24-,27+,28-/m0/s1 LXLHXTRWJAASKA-VCTRFXNDSA-N
006 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
006 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
006 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
006 Z419084966 F4 fragment NCC(O)Cc1ccccc1 InChI=1S/C9H13NO/c10-7-9(11)6-8-4-2-1-3-5-8/h1-5,9,11H,6-7,10H2 JIIXMZQZEAAIJX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
006 N2 S1 1
006 C20 S1 1
006 C21 S1 1
006 O21 S1 1
006 C22 S1 1
006 C23 S1 1
006 C24 S1 1
006 C25 S1 1
006 C26 S1 1
006 C27 S1 1
006 C28 S1 1
006 C29 S1 1
006 N30 S1 1
006 C31 S1 1
006 C32 S1 1
006 C33 S1 1
006 C34 S1 1
006 C35 S1 1
006 C36 S1 1
006 C37 S1 1
006 C38 S1 1
006 C39 S1 1
006 C40 S1 1
006 O40 S1 1
006 C41 S1 1
006 O41 S1 1
006 C42 S1 1
006 C45 S1 1
006 C46 S1 1
006 C47 S1 1
006 C48 S1 1
006 C49 S1 1
006 C50 S1 1
006 N50 S1 1
006 O50 S1 1
006 S50 S1 1
006 C51 S1 1
006 C54 S1 1
006 C55 S1 1
006 N2 F1 1
006 C48 F1 1
006 O40 F1 1
006 C49 F1 1
006 N30 F1 2
006 C55 F1 2
006 O50 F1 2
006 C54 F1 2
006 N50 F1 3
006 C29 F1 3
006 O21 F1 3
006 C28 F1 3
006 O50 F2 1
006 C55 F2 1
006 C54 F2 1
006 N50 F2 1
006 C22 F3 1
006 C27 F3 1
006 C26 F3 1
006 C25 F3 1
006 C24 F3 1
006 C23 F3 1
006 C32 F3 2
006 C33 F3 2
006 C34 F3 2
006 C38 F3 2
006 C37 F3 2
006 C36 F3 2
006 C40 F3 3
006 C47 F3 3
006 C46 F3 3
006 C45 F3 3
006 C42 F3 3
006 C41 F3 3
006 N30 F4 1
006 C31 F4 1
006 C35 F4 1
006 O30 F4 1
006 C39 F4 1
006 C36 F4 1
006 C32 F4 1
006 C33 F4 1
006 C34 F4 1
006 C38 F4 1
006 C37 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 006
_pdbe_chem_comp_rdkit_properties.exactmw 631.272
_pdbe_chem_comp_rdkit_properties.amw 631.795
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 86
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 325.800
_pdbe_chem_comp_rdkit_properties.tpsa 128.200
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.489
_pdbe_chem_comp_rdkit_properties.CrippenMR 171.762
_pdbe_chem_comp_rdkit_properties.chi0v 22.516
_pdbe_chem_comp_rdkit_properties.chi1v 12.469
_pdbe_chem_comp_rdkit_properties.chi2v 6.053
_pdbe_chem_comp_rdkit_properties.chi3v 6.053
_pdbe_chem_comp_rdkit_properties.chi4v 4.049
_pdbe_chem_comp_rdkit_properties.chi0n 62.699
_pdbe_chem_comp_rdkit_properties.chi1n 31.863
_pdbe_chem_comp_rdkit_properties.chi2n 5.280
_pdbe_chem_comp_rdkit_properties.chi3n 5.280
_pdbe_chem_comp_rdkit_properties.chi4n 3.371
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.860
_pdbe_chem_comp_rdkit_properties.kappa1 8.933
_pdbe_chem_comp_rdkit_properties.kappa2 13.641
_pdbe_chem_comp_rdkit_properties.kappa3 7.186
_pdbe_chem_comp_rdkit_properties.Phi 2.708
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
006 UniChem ChEMBL CHEMBL231522
006 UniChem PDBe 006
006 UniChem ZINC ZINC000028703797
006 UniChem fdasrs 21BKD6T22E
006 UniChem SureChEMBL SCHEMBL13788265
006 UniChem 'PubChem TPHARMA' 14863281
006 UniChem Nikkaji J1.939.955I
006 UniChem BindingDb 50209559
006 UniChem BRENDA 13976
006 UniChem BRENDA 167907
006 UniChem PubChem 9895503
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
006 N2 -1.301 0.631 -2.280 ETKDGv3 1
006 C20 -0.656 1.517 -3.258 ETKDGv3 2
006 O20 0.291 3.730 -3.527 ETKDGv3 3
006 C21 -1.564 1.664 -4.497 ETKDGv3 4
006 O21 1.734 2.465 -1.568 ETKDGv3 5
006 C22 -1.852 0.329 -5.134 ETKDGv3 6
006 C23 -0.960 -0.242 -5.964 ETKDGv3 7
006 C24 -1.225 -1.579 -6.536 ETKDGv3 8
006 C25 -2.348 -2.234 -6.219 ETKDGv3 9
006 C26 -3.326 -1.620 -5.298 ETKDGv3 10
006 C27 -3.094 -0.406 -4.785 ETKDGv3 11
006 C28 -0.371 2.893 -2.610 ETKDGv3 12
006 C29 0.513 2.732 -1.393 ETKDGv3 13
006 N30 2.596 0.687 1.572 ETKDGv3 14
006 O30 1.711 -0.962 3.462 ETKDGv3 15
006 C31 3.160 -0.665 1.507 ETKDGv3 16
006 C32 4.642 -0.593 1.533 ETKDGv3 17
006 C33 5.452 -0.115 0.581 ETKDGv3 18
006 C34 6.915 -0.107 0.835 ETKDGv3 19
006 C35 2.813 -1.496 2.776 ETKDGv3 20
006 C36 5.163 -1.084 2.786 ETKDGv3 21
006 C37 6.475 -1.076 3.048 ETKDGv3 22
006 C38 7.400 -0.562 2.007 ETKDGv3 23
006 C39 4.069 -1.526 3.681 ETKDGv3 24
006 C40 -4.064 -2.807 3.174 ETKDGv3 25
006 O40 0.010 -1.246 -2.780 ETKDGv3 26
006 C41 -2.681 -3.238 2.899 ETKDGv3 27
006 O41 -1.895 -1.013 0.032 ETKDGv3 28
006 C42 -1.970 -2.657 1.917 ETKDGv3 29
006 C43 -0.561 -3.105 1.648 ETKDGv3 30
006 C44 -4.521 -0.122 0.520 ETKDGv3 31
006 C45 -2.608 -1.603 1.077 ETKDGv3 32
006 C46 -3.864 -1.191 1.348 ETKDGv3 33
006 C47 -4.624 -1.837 2.445 ETKDGv3 34
006 C48 -0.957 -0.756 -2.137 ETKDGv3 35
006 C49 -1.765 -1.636 -1.239 ETKDGv3 36
006 C50 -1.198 3.622 0.252 ETKDGv3 37
006 N50 -0.010 2.830 -0.049 ETKDGv3 38
006 O50 0.713 0.152 0.300 ETKDGv3 39
006 S50 -1.221 3.978 2.034 ETKDGv3 40
006 C51 -0.163 2.534 2.362 ETKDGv3 41
006 C52 0.646 2.783 3.645 ETKDGv3 42
006 C53 -1.089 1.316 2.560 ETKDGv3 43
006 C54 0.762 2.408 1.124 ETKDGv3 44
006 C55 1.344 1.022 0.957 ETKDGv3 45
006 HN2 -2.144 0.986 -1.773 ETKDGv3 46
006 H20 0.317 1.086 -3.585 ETKDGv3 47
006 HO20 -0.398 4.295 -3.966 ETKDGv3 48
006 H21 -2.520 2.152 -4.206 ETKDGv3 49
006 H21A -1.078 2.323 -5.249 ETKDGv3 50
006 H23 -0.035 0.263 -6.213 ETKDGv3 51
006 H24 -0.505 -2.029 -7.208 ETKDGv3 52
006 H25 -2.541 -3.215 -6.634 ETKDGv3 53
006 H26 -4.230 -2.157 -5.038 ETKDGv3 54
006 H27 -3.812 0.033 -4.103 ETKDGv3 55
006 H28 -1.343 3.348 -2.316 ETKDGv3 56
006 HN30 3.060 1.400 2.181 ETKDGv3 57
006 HO30 1.424 -1.651 4.116 ETKDGv3 58
006 H31 2.829 -1.192 0.585 ETKDGv3 59
006 H33 5.053 0.264 -0.351 ETKDGv3 60
006 H34 7.590 0.270 0.078 ETKDGv3 61
006 H35 2.583 -2.538 2.449 ETKDGv3 62
006 H37 6.856 -1.434 3.996 ETKDGv3 63
006 H38 8.466 -0.553 2.193 ETKDGv3 64
006 H39 3.972 -0.808 4.525 ETKDGv3 65
006 H39A 4.260 -2.550 4.067 ETKDGv3 66
006 H40 -4.624 -3.278 3.972 ETKDGv3 67
006 H41 -2.246 -4.022 3.507 ETKDGv3 68
006 H43 -0.571 -3.948 0.926 ETKDGv3 69
006 H43A 0.042 -2.274 1.230 ETKDGv3 70
006 H43B -0.065 -3.439 2.585 ETKDGv3 71
006 H44 -5.470 0.216 0.987 ETKDGv3 72
006 H44A -4.746 -0.520 -0.492 ETKDGv3 73
006 H44B -3.853 0.759 0.425 ETKDGv3 74
006 H47 -5.640 -1.529 2.659 ETKDGv3 75
006 H49 -2.770 -1.785 -1.689 ETKDGv3 76
006 H49A -1.272 -2.625 -1.128 ETKDGv3 77
006 H50 -2.111 3.055 -0.026 ETKDGv3 78
006 H50A -1.167 4.589 -0.293 ETKDGv3 79
006 H52 1.286 3.685 3.536 ETKDGv3 80
006 H52A -0.036 2.944 4.507 ETKDGv3 81
006 H52B 1.296 1.912 3.871 ETKDGv3 82
006 H53 -0.511 0.408 2.828 ETKDGv3 83
006 H53A -1.662 1.112 1.633 ETKDGv3 84
006 H53B -1.816 1.510 3.378 ETKDGv3 85
006 H54 1.609 3.123 1.227 ETKDGv3 86
#