data_01S
#
_chem_comp.id 01S
_chem_comp.name N-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-alanylglycinamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H22 N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-12-12
_chem_comp.pdbx_modified_date 2011-07-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 302.327
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 01S
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1JAQ
_chem_comp.pdbx_subcomponent_list "HMI ALA GLY NH2"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
01S N N1 N 0 1 N N N N N N 25.583 60.080 53.721 4.014 -1.829 1.015 N HMI 1
01S OH O1 O 0 1 N N N N N N 24.719 59.081 54.160 4.533 -3.139 0.878 OH HMI 2
01S C1 C1 C 0 1 N N N N N N 26.843 59.771 53.490 3.277 -1.289 0.024 C1 HMI 3
01S O1 O2 O 0 1 N N N N N N 27.255 58.647 53.667 3.135 -1.888 -1.021 O1 HMI 4
01S CA C2 C 0 1 N N R N N N 27.771 60.891 52.984 2.629 0.058 0.215 CA HMI 5
01S CB C3 C 0 1 N N N N N N 29.001 60.947 53.859 3.546 1.148 -0.343 CB HMI 6
01S CG C4 C 0 1 N N N N N N 28.946 61.984 54.984 2.940 2.522 -0.050 CG HMI 7
01S CD1 C5 C 0 1 N N N N N N 29.266 63.387 54.451 2.942 2.769 1.460 CD1 HMI 8
01S CD2 C6 C 0 1 N N N N N N 27.573 61.958 55.715 3.771 3.604 -0.744 CD2 HMI 9
01S C C7 C 0 1 N N N N N N 28.199 60.603 51.554 1.311 0.089 -0.515 C HMI 10
01S O O3 O 0 1 N N N N N N 27.986 61.407 50.641 1.273 0.398 -1.687 O HMI 11
01S N1 N2 N 0 1 N N N N N N 28.856 59.473 51.355 0.173 -0.228 0.135 N ALA 12
01S CA1 C8 C 0 1 N N R N N N 29.325 59.154 50.027 -1.093 -0.305 -0.598 CA ALA 13
01S C2 C9 C 0 1 N N N N N N 28.242 58.410 49.224 -2.238 -0.059 0.349 C ALA 14
01S O2 O5 O 0 1 N N N N N N 28.469 58.028 48.074 -2.019 0.160 1.522 O ALA 15
01S CB1 C10 C 0 1 N N N N N N 30.614 58.385 50.103 -1.236 -1.694 -1.222 CB ALA 16
01S N2 N3 N 0 1 N N N N N N 27.130 58.102 49.910 -3.507 -0.082 -0.106 N GLY 17
01S CA2 C11 C 0 1 N N N N N N 25.943 57.518 49.308 -4.620 0.157 0.815 CA GLY 18
01S C3 C12 C 0 1 N N N N N N 25.937 56.117 48.829 -5.922 0.078 0.060 C GLY 19
01S O3 O7 O 0 1 N N N N N N 25.168 55.836 47.908 -5.920 -0.156 -1.130 O GLY 20
01S N3 N4 N 0 1 N N N N N N 26.392 55.206 49.678 -7.089 0.266 0.708 N NH2 21
01S HN H1 H 0 1 N N N N N N 25.254 61.014 53.584 4.184 -1.322 1.824 HN HMI 22
01S HOH H2 H 0 1 N N N N N N 24.522 58.493 53.440 5.048 -3.440 1.640 HOH HMI 23
01S HA H3 H 0 1 N N N N N N 27.233 61.850 53.020 2.460 0.233 1.277 HA HMI 24
01S HB1 H4 H 0 1 N N N N N N 29.127 59.957 54.322 4.526 1.075 0.129 HB1 HMI 25
01S HB2 H5 H 0 1 N N N N N N 29.835 61.241 53.205 3.651 1.019 -1.420 HB2 HMI 26
01S HG H6 H 0 1 N N N N N N 29.716 61.718 55.723 1.917 2.555 -0.423 HG HMI 27
01S HD11 H7 H 0 0 N N N N N N 29.343 64.091 55.293 2.523 3.754 1.667 HD11 HMI 28
01S HD12 H8 H 0 0 N N N N N N 30.221 63.363 53.905 2.338 2.007 1.953 HD12 HMI 29
01S HD13 H9 H 0 0 N N N N N N 28.464 63.713 53.773 3.964 2.722 1.835 HD13 HMI 30
01S HD21 H10 H 0 0 N N N N N N 27.736 61.952 56.803 3.770 3.428 -1.820 HD21 HMI 31
01S HD22 H11 H 0 0 N N N N N N 26.993 62.850 55.437 3.339 4.583 -0.536 HD22 HMI 32
01S HD23 H12 H 0 0 N N N N N N 27.019 61.054 55.423 4.794 3.571 -0.372 HD23 HMI 33
01S H H14 H 0 1 N N N N N N 29.026 58.846 52.115 0.192 -0.404 1.089 H ALA 34
01S HA1 H16 H 0 1 N N N N N N 29.531 60.089 49.485 -1.103 0.450 -1.385 HA ALA 35
01S HB11 H17 H 0 0 N N N N N N 30.990 58.197 49.086 -2.178 -1.752 -1.768 HB1 ALA 36
01S HB21 H18 H 0 0 N N N N N N 31.357 58.969 50.666 -0.408 -1.872 -1.908 HB2 ALA 37
01S HB3 H19 H 0 1 N N N N N N 30.439 57.426 50.612 -1.226 -2.449 -0.436 HB3 ALA 38
01S H1 H21 H 0 1 N N N N N N 27.118 58.285 50.893 -3.682 -0.256 -1.044 H GLY 39
01S HA2 H23 H 0 1 N N N N N N 25.160 57.573 50.078 -4.610 -0.597 1.601 HA2 GLY 40
01S HA3 H24 H 0 1 N N N N N N 25.825 58.097 48.380 -4.518 1.147 1.259 HA3 GLY 41
01S HN1 H26 H 0 1 N N N N N N 26.824 55.643 50.467 -7.091 0.453 1.660 HN1 NH2 42
01S HN2 H27 H 0 1 N N N N N N 26.314 54.218 49.547 -7.927 0.215 0.222 HN2 NH2 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
01S N OH SING N N 1
01S N C1 SING N N 2
01S N HN SING N N 3
01S OH HOH SING N N 4
01S C1 O1 DOUB N N 5
01S C1 CA SING N N 6
01S CA CB SING N N 7
01S CA C SING N N 8
01S CA HA SING N N 9
01S CB CG SING N N 10
01S CB HB1 SING N N 11
01S CB HB2 SING N N 12
01S CG CD1 SING N N 13
01S CG CD2 SING N N 14
01S CG HG SING N N 15
01S CD1 HD11 SING N N 16
01S CD1 HD12 SING N N 17
01S CD1 HD13 SING N N 18
01S CD2 HD21 SING N N 19
01S CD2 HD22 SING N N 20
01S CD2 HD23 SING N N 21
01S C O DOUB N N 22
01S N1 CA1 SING N N 23
01S N1 H SING N N 24
01S CA1 C2 SING N N 25
01S CA1 CB1 SING N N 26
01S CA1 HA1 SING N N 27
01S C2 O2 DOUB N N 28
01S CB1 HB11 SING N N 29
01S CB1 HB21 SING N N 30
01S CB1 HB3 SING N N 31
01S N2 CA2 SING N N 32
01S N2 H1 SING N N 33
01S CA2 C3 SING N N 34
01S CA2 HA2 SING N N 35
01S CA2 HA3 SING N N 36
01S C3 O3 DOUB N N 37
01S N3 HN1 SING N N 38
01S N3 HN2 SING N N 39
01S C N1 SING N N 40
01S C2 N2 SING N N 41
01S C3 N3 SING N N 42
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
01S SMILES ACDLabs 10.04 O=C(N)CNC(=O)C(NC(=O)C(C(=O)NO)CC(C)C)C
01S SMILES_CANONICAL CACTVS 3.352 CC(C)C[C@@H](C(=O)NO)C(=O)N[C@H](C)C(=O)NCC(N)=O
01S SMILES CACTVS 3.352 CC(C)C[CH](C(=O)NO)C(=O)N[CH](C)C(=O)NCC(N)=O
01S InChI InChI 1.03 InChI=1S/C12H22N4O5/c1-6(2)4-8(12(20)16-21)11(19)15-7(3)10(18)14-5-9(13)17/h6-8,21H,4-5H2,1-3H3,(H2,13,17)(H,14,18)(H,15,19)(H,16,20)/t7-,8-/m0/s1
01S InChIKey InChI 1.03 FGSNBBSHVNLDMX-YUMQZZPRSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
01S "SYSTEMATIC NAME" ACDLabs 10.04 N-[(2R)-2-(hydroxycarbamoyl)-4-methylpentanoyl]-L-alanylglycinamide
01S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2S)-N-[(2S)-1-[(2-amino-2-oxo-ethyl)amino]-1-oxo-propan-2-yl]-N'-hydroxy-2-(2-methylpropyl)propanediamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
01S 'Create component' 2008-12-12 RCSB
01S 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
01S N N 4.299 2.160 1
01S OH O 3.000 2.910 2
01S C1 C 4.299 0.660 3
01S O1 O 3.000 -0.090 4
01S CA C 5.598 -0.090 5
01S CB C 5.598 -1.590 6
01S CG C 4.299 -2.340 7
01S CD1 C 4.299 -3.840 8
01S CD2 C 3.000 -1.590 9
01S C C 6.897 0.660 10
01S O O 6.897 2.160 11
01S N1 N 8.196 -0.090 12
01S CA1 C 9.495 0.660 13
01S C2 C 10.794 -0.090 14
01S O2 O 10.794 -1.590 15
01S CB1 C 9.495 2.160 16
01S N2 N 12.093 0.660 17
01S CA2 C 13.392 -0.090 18
01S C3 C 14.691 0.660 19
01S O3 O 14.691 2.160 20
01S N3 N 15.990 -0.090 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
01S N OH SINGLE NONE 1
01S N C1 SINGLE NONE 2
01S C1 O1 DOUBLE NONE 3
01S C1 CA SINGLE NONE 4
01S CA CB SINGLE BEGINDASH 5
01S CA C SINGLE NONE 6
01S CB CG SINGLE NONE 7
01S CG CD1 SINGLE NONE 8
01S CG CD2 SINGLE NONE 9
01S C O DOUBLE NONE 10
01S N1 CA1 SINGLE NONE 11
01S CA1 C2 SINGLE NONE 12
01S CA1 CB1 SINGLE BEGINWEDGE 13
01S C2 O2 DOUBLE NONE 14
01S N2 CA2 SINGLE NONE 15
01S CA2 C3 SINGLE NONE 16
01S C3 O3 DOUBLE NONE 17
01S C N1 SINGLE NONE 18
01S C2 N2 SINGLE NONE 19
01S C3 N3 SINGLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
01S amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
01S peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
01S N F1 1
01S C1 F1 1
01S O1 F1 1
01S CA F1 1
01S N1 F1 2
01S C F1 2
01S O F1 2
01S CA F1 2
01S N2 F1 3
01S C2 F1 3
01S O2 F1 3
01S CA1 F1 3
01S N3 F1 4
01S C3 F1 4
01S O3 F1 4
01S CA2 F1 4
01S O2 F2 1
01S C2 F2 1
01S CA1 F2 1
01S N1 F2 1
01S O3 F2 2
01S C3 F2 2
01S CA2 F2 2
01S N2 F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 01S
_pdbe_chem_comp_rdkit_properties.exactmw 302.159
_pdbe_chem_comp_rdkit_properties.amw 302.331
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 43
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 153.424
_pdbe_chem_comp_rdkit_properties.tpsa 150.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.740
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.683
_pdbe_chem_comp_rdkit_properties.chi0v 9.830
_pdbe_chem_comp_rdkit_properties.chi1v 4.591
_pdbe_chem_comp_rdkit_properties.chi2v 1.430
_pdbe_chem_comp_rdkit_properties.chi3v 1.430
_pdbe_chem_comp_rdkit_properties.chi4v 0.726
_pdbe_chem_comp_rdkit_properties.chi0n 31.830
_pdbe_chem_comp_rdkit_properties.chi1n 15.235
_pdbe_chem_comp_rdkit_properties.chi2n 1.430
_pdbe_chem_comp_rdkit_properties.chi3n 1.430
_pdbe_chem_comp_rdkit_properties.chi4n 0.726
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.160
_pdbe_chem_comp_rdkit_properties.kappa1 3.778
_pdbe_chem_comp_rdkit_properties.kappa2 8.902
_pdbe_chem_comp_rdkit_properties.kappa3 7.254
_pdbe_chem_comp_rdkit_properties.Phi 1.601
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
01S UniChem ChEMBL CHEMBL2372437
01S UniChem PDBe 01S
01S UniChem SureChEMBL SCHEMBL9287740
01S UniChem 'PubChem TPHARMA' 16827515
01S UniChem Nikkaji J924.444A
01S UniChem BindingDb 50035235
01S UniChem PubChem 5496618
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
01S N -2.936 -1.984 -1.051 ETKDGv3 1
01S OH -3.611 -2.448 -2.130 ETKDGv3 2
01S C1 -2.389 -0.661 -1.051 ETKDGv3 3
01S O1 -2.497 0.057 -2.081 ETKDGv3 4
01S CA -1.660 -0.122 0.152 ETKDGv3 5
01S CB -2.536 -0.103 1.433 ETKDGv3 6
01S CG -3.722 0.897 1.451 ETKDGv3 7
01S CD1 -4.880 0.481 0.534 ETKDGv3 8
01S CD2 -3.292 2.344 1.172 ETKDGv3 9
01S C -0.404 -0.931 0.360 ETKDGv3 10
01S O -0.437 -1.981 1.061 ETKDGv3 11
01S N1 0.813 -0.543 -0.295 ETKDGv3 12
01S CA1 2.033 -1.351 -0.225 ETKDGv3 13
01S C2 3.243 -0.474 -0.424 ETKDGv3 14
01S O2 3.443 0.068 -1.545 ETKDGv3 15
01S CB1 1.986 -2.460 -1.279 ETKDGv3 16
01S N2 4.149 -0.235 0.664 ETKDGv3 17
01S CA2 5.303 0.651 0.540 ETKDGv3 18
01S C3 4.857 2.082 0.526 ETKDGv3 19
01S O3 4.454 2.619 1.591 ETKDGv3 20
01S N3 4.858 2.832 -0.689 ETKDGv3 21
01S HN -2.834 -2.601 -0.215 ETKDGv3 22
01S HOH -2.922 -2.895 -2.686 ETKDGv3 23
01S HA -1.339 0.920 -0.061 ETKDGv3 24
01S HB1 -2.922 -1.123 1.648 ETKDGv3 25
01S HB2 -1.877 0.159 2.291 ETKDGv3 26
01S HG -4.123 0.878 2.489 ETKDGv3 27
01S HD11 -4.641 0.666 -0.532 ETKDGv3 28
01S HD12 -5.122 -0.594 0.675 ETKDGv3 29
01S HD13 -5.786 1.073 0.785 ETKDGv3 30
01S HD21 -2.421 2.617 1.804 ETKDGv3 31
01S HD22 -4.126 3.037 1.413 ETKDGv3 32
01S HD23 -3.026 2.484 0.103 ETKDGv3 33
01S H 0.788 0.280 -0.941 ETKDGv3 34
01S HA1 2.102 -1.830 0.776 ETKDGv3 35
01S HB11 2.917 -3.065 -1.239 ETKDGv3 36
01S HB21 1.875 -2.029 -2.297 ETKDGv3 37
01S HB3 1.124 -3.132 -1.084 ETKDGv3 38
01S H1 3.988 -0.712 1.579 ETKDGv3 39
01S HA2 5.876 0.403 -0.379 ETKDGv3 40
01S HA3 5.980 0.497 1.408 ETKDGv3 41
01S HN1 4.533 3.824 -0.694 ETKDGv3 42
01S HN2 5.180 2.402 -1.584 ETKDGv3 43
#