data_06C
#
_chem_comp.id 06C
_chem_comp.name Iodomethane
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C H3 I"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Methyl iodine"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-03-03
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 141.939
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 06C
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3POT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
06C C1 C1 C 0 1 N N N N N N 28.594 31.543 -7.934 -1.925 0.000 -0.000 C1 06C 1
06C H H H 0 1 N N N N N N 28.168 31.365 -8.933 -2.289 -1.027 0.021 H 06C 2
06C HA HA H 0 1 N N N N N N 29.506 32.151 -8.027 -2.289 0.495 -0.900 HA 06C 3
06C HB HB H 0 1 N N N N N N 28.842 30.580 -7.464 -2.289 0.532 0.879 HB 06C 4
06C I1 I1 I 0 1 N Y N N N N 27.193 32.561 -6.746 0.237 -0.000 0.000 I1 06C 5
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
06C C1 H SING N N 1
06C C1 HA SING N N 2
06C C1 HB SING N N 3
06C C1 I1 SING N N 4
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
06C SMILES ACDLabs 12.01 IC
06C SMILES_CANONICAL CACTVS 3.370 CI
06C SMILES CACTVS 3.370 CI
06C SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CI
06C SMILES "OpenEye OEToolkits" 1.7.0 CI
06C InChI InChI 1.03 InChI=1S/CH3I/c1-2/h1H3
06C InChIKey InChI 1.03 INQOMBQAUSQDDS-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
06C "SYSTEMATIC NAME" ACDLabs 12.01 iodomethane
06C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 iodomethane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
06C 'Create component' 2011-03-03 RCSB
06C 'Modify descriptor' 2011-06-04 RCSB
06C 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 06C
_pdbx_chem_comp_synonyms.name "Methyl iodine"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 06C
_pdbe_chem_comp_synonyms.name 'Methyl iodine'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
06C C1 C 3.000 0.000 1
06C I1 I 4.500 0.000 2
#
_pdbe_chem_comp_bond_depiction.comp_id 06C
_pdbe_chem_comp_bond_depiction.atom_id_1 C1
_pdbe_chem_comp_bond_depiction.atom_id_2 I1
_pdbe_chem_comp_bond_depiction.value_order SINGLE
_pdbe_chem_comp_bond_depiction.bond_dir NONE
_pdbe_chem_comp_bond_depiction.pdbx_ordinal 1
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id 06C
_pdbe_chem_comp_rdkit_properties.exactmw 141.928
_pdbe_chem_comp_rdkit_properties.amw 141.939
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtoms 5
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 32.216
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.051
_pdbe_chem_comp_rdkit_properties.CrippenMR 19.944
_pdbe_chem_comp_rdkit_properties.chi0v 3.035
_pdbe_chem_comp_rdkit_properties.chi1v 1.268
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 3.878
_pdbe_chem_comp_rdkit_properties.chi1n 1.689
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.730
_pdbe_chem_comp_rdkit_properties.kappa1 0.365
_pdbe_chem_comp_rdkit_properties.kappa2 1.730
_pdbe_chem_comp_rdkit_properties.kappa3 0.100
_pdbe_chem_comp_rdkit_properties.Phi 0.316
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
06C UniChem ChEMBL CHEMBL115849
06C UniChem PDBe 06C
06C UniChem 'KEGG LIGAND' C18448
06C UniChem ChEBI 39282
06C UniChem eMolecules 475694
06C UniChem fdasrs DAT010ZJSR
06C UniChem HMDB HMDB0253530
06C UniChem 'PubChem TPHARMA' 15219094
06C UniChem NMRShiftDB 20028919
06C UniChem ACTor 147937-07-3
06C UniChem ACTor 74-88-4
06C UniChem Nikkaji J1.063.962J
06C UniChem Nikkaji J1.245.462G
06C UniChem Nikkaji J2.382E
06C UniChem 'EPA CompTox Dashboard' DTXSID0024187
06C UniChem BRENDA 100929
06C UniChem BRENDA 136700
06C UniChem BRENDA 4534
06C UniChem BRENDA 52483
06C UniChem BRENDA 9217
06C UniChem Rhea 39282
06C UniChem ChemicalBook CB9326765
06C UniChem SureChEMBL SCHEMBL498
06C UniChem PubChem 6328
06C UniChem Mcule MCULE-1718786667
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
06C C1 -0.204 -0.003 0.001 ETKDGv3 1
06C H -0.567 -0.750 -0.734 ETKDGv3 2
06C HA -0.564 -0.277 1.015 ETKDGv3 3
06C HB -0.592 1.001 -0.270 ETKDGv3 4
06C I1 1.927 0.030 -0.012 ETKDGv3 5
#