data_06P
#
_chem_comp.id 06P
_chem_comp.name D-phenylalanyl-N-[(1-methylpyridinium-4-yl)methyl]-L-prolinamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H27 N4 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2011-03-18
_chem_comp.pdbx_modified_date 2012-02-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 367.465
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 06P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3QTV
_chem_comp.pdbx_subcomponent_list "DPN PRO NNK"
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
06P N4 N4 N 0 1 N N N N N N 16.324 -15.575 23.122 3.456 -1.921 -0.754 N DPN 1
06P C3 C3 C 0 1 N N R N N N 17.574 -14.836 23.129 3.120 -0.584 -0.249 CA DPN 2
06P C5 C5 C 0 1 N N N N N N 17.334 -13.470 22.535 1.679 -0.561 0.193 C DPN 3
06P O7 O7 O 0 1 N N N N N N 16.402 -12.766 22.920 1.106 -1.600 0.444 O DPN 4
06P C2 C2 C 0 1 N N N N N N 18.067 -14.775 24.581 4.023 -0.245 0.939 CB DPN 5
06P C1 C1 C 0 1 Y N N N N N 19.486 -14.260 24.661 5.452 -0.146 0.471 CG DPN 6
06P C8 C8 C 0 1 Y N N N N N 19.743 -13.094 25.365 5.956 1.066 0.039 CD1 DPN 7
06P C12 C12 C 0 1 Y N N N N N 20.537 -14.934 24.040 6.261 -1.267 0.480 CD2 DPN 8
06P C9 C9 C 0 1 Y N N N N N 21.030 -12.583 25.447 7.267 1.156 -0.390 CE1 DPN 9
06P C11 C11 C 0 1 Y N N N N N 21.830 -14.427 24.134 7.571 -1.178 0.047 CE2 DPN 10
06P C10 C10 C 0 1 Y N N N N N 22.081 -13.255 24.833 8.074 0.034 -0.387 CZ DPN 11
06P N6 N6 N 0 1 N N N N N N 18.155 -13.059 21.574 1.028 0.613 0.310 N PRO 12
06P C13 C13 C 0 1 N N S N N N 17.944 -11.749 20.956 -0.371 0.779 0.729 CA PRO 13
06P C14 C14 C 0 1 N N N N N N 16.554 -11.629 20.389 -1.281 0.042 -0.220 C PRO 14
06P O15 O15 O 0 1 N N N N N N 16.047 -12.566 19.777 -0.813 -0.566 -1.159 O PRO 15
06P C19 C19 C 0 1 N N N N N N 18.973 -11.700 19.831 -0.685 2.290 0.691 CB PRO 16
06P C20 C20 C 0 1 N N N N N N 20.036 -12.723 20.206 0.383 2.841 -0.290 CG PRO 17
06P C21 C21 C 0 1 N N N N N N 19.297 -13.785 21.007 1.604 1.944 0.045 CD PRO 18
06P N16 N16 N 0 1 N N N N N N 15.905 -10.482 20.594 -2.615 0.059 -0.024 N16 NNK 19
06P C17 C17 C 0 1 N N N N N N 14.542 -10.229 20.099 -3.499 -0.657 -0.947 C17 NNK 20
06P C18 C18 C 0 1 Y N N N N N 13.536 -10.459 21.209 -4.930 -0.481 -0.509 C18 NNK 21
06P C22 C22 C 0 1 Y N N N N N 13.203 -9.442 22.100 -5.691 0.579 -0.978 C22 NNK 22
06P C23 C23 C 0 1 Y N N N N N 12.279 -9.697 23.109 -7.000 0.708 -0.555 C23 NNK 23
06P N24 N24 N 1 1 Y N N N N N 11.719 -10.910 23.244 -7.526 -0.161 0.285 N24 NNK 24
06P C25 C25 C 0 1 N N N N N N 10.747 -11.145 24.319 -8.918 0.010 0.711 C25 NNK 25
06P C26 C26 C 0 1 Y N N N N N 12.035 -11.908 22.401 -6.833 -1.181 0.752 C26 NNK 26
06P C27 C27 C 0 1 Y N N N N N 12.946 -11.704 21.373 -5.520 -1.378 0.369 C27 NNK 27
06P HN4 HN4 H 0 1 N N N N N N 15.975 -15.633 22.186 4.398 -1.945 -1.116 H DPN 28
06P HN4A HN4A H 0 0 N N N N N N 16.480 -16.497 23.477 3.326 -2.621 -0.038 H2 DPN 29
06P H3 H3 H 0 1 N N N N N N 18.351 -15.321 22.520 3.269 0.152 -1.040 HA DPN 30
06P H2 H2 H 0 1 N N N N N N 18.032 -15.787 25.011 3.941 -1.027 1.693 HB2 DPN 31
06P H2A H2A H 0 1 N N N N N N 17.412 -14.100 25.150 3.715 0.708 1.369 HB3 DPN 32
06P H8 H8 H 0 1 N N N N N N 18.931 -12.577 25.856 5.325 1.943 0.036 HD1 DPN 33
06P H12 H12 H 0 1 N N N N N N 20.349 -15.844 23.489 5.869 -2.214 0.822 HD2 DPN 34
06P H9 H9 H 0 1 N N N N N N 21.215 -11.666 25.986 7.660 2.104 -0.729 HE1 DPN 35
06P H11 H11 H 0 1 N N N N N N 22.646 -14.951 23.658 8.201 -2.055 0.049 HE2 DPN 36
06P H10 H10 H 0 1 N N N N N N 23.087 -12.867 24.900 9.098 0.105 -0.723 HZ DPN 37
06P H13 H13 H 0 1 N N N N N N 18.053 -10.929 21.681 -0.503 0.397 1.741 HA PRO 38
06P H19 H19 H 0 1 N N N N N N 18.510 -11.954 18.866 -1.689 2.465 0.306 HB2 PRO 39
06P H19A H19A H 0 0 N N N N N N 19.411 -10.695 19.746 -0.566 2.734 1.679 HB3 PRO 40
06P H20 H20 H 0 1 N N N N N N 20.498 -13.158 19.308 0.069 2.708 -1.326 HG2 PRO 41
06P H20A H20A H 0 0 N N N N N N 20.833 -12.260 20.807 0.601 3.889 -0.082 HG3 PRO 42
06P H21 H21 H 0 1 N N N N N N 19.935 -14.211 21.796 2.120 2.318 0.929 HD2 PRO 43
06P H21A H21A H 0 0 N N N N N N 18.967 -14.616 20.366 2.286 1.901 -0.804 HD3 PRO 44
06P HN16 HN16 H 0 0 N N N N N N 16.366 -9.759 21.109 -2.989 0.546 0.727 HN16 NNK 45
06P H17 H17 H 0 1 N N N N N N 14.469 -9.188 19.752 -3.375 -0.257 -1.953 H17 NNK 46
06P H17A H17A H 0 0 N N N N N N 14.326 -10.913 19.265 -3.246 -1.717 -0.943 H17A NNK 47
06P H22 H22 H 0 1 N N N N N N 13.657 -8.466 22.009 -5.265 1.295 -1.666 H22 NNK 48
06P H23 H23 H 0 1 N N N N N N 12.008 -8.907 23.794 -7.599 1.531 -0.916 H23 NNK 49
06P H25 H25 H 0 1 N N N N N N 10.397 -12.187 24.276 -9.575 -0.524 0.024 H25 NNK 50
06P H25A H25A H 0 0 N N N N N N 11.225 -10.959 25.292 -9.042 -0.390 1.717 H25A NNK 51
06P H25B H25B H 0 0 N N N N N N 9.891 -10.465 24.194 -9.171 1.070 0.707 H25B NNK 52
06P H26 H26 H 0 1 N N N N N N 11.576 -12.878 22.524 -7.298 -1.873 1.439 H26 NNK 53
06P H27 H27 H 0 1 N N N N N N 13.195 -12.513 20.702 -4.958 -2.218 0.751 H27 NNK 54
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
06P C1 C2 SING N N 1
06P C1 C8 DOUB Y N 2
06P C1 C12 SING Y N 3
06P C2 C3 SING N N 4
06P C3 N4 SING N N 5
06P C3 C5 SING N N 6
06P C5 N6 SING N N 7
06P C5 O7 DOUB N N 8
06P N6 C13 SING N N 9
06P N6 C21 SING N N 10
06P C8 C9 SING Y N 11
06P C9 C10 DOUB Y N 12
06P C10 C11 SING Y N 13
06P C11 C12 DOUB Y N 14
06P C13 C14 SING N N 15
06P C13 C19 SING N N 16
06P C14 O15 DOUB N N 17
06P C14 N16 SING N N 18
06P N16 C17 SING N N 19
06P C17 C18 SING N N 20
06P C18 C22 DOUB Y N 21
06P C18 C27 SING Y N 22
06P C19 C20 SING N N 23
06P C20 C21 SING N N 24
06P C22 C23 SING Y N 25
06P C23 N24 DOUB Y N 26
06P N24 C25 SING N N 27
06P N24 C26 SING Y N 28
06P C26 C27 DOUB Y N 29
06P C2 H2 SING N N 30
06P C2 H2A SING N N 31
06P C3 H3 SING N N 32
06P N4 HN4 SING N N 33
06P N4 HN4A SING N N 34
06P C8 H8 SING N N 35
06P C9 H9 SING N N 36
06P C10 H10 SING N N 37
06P C11 H11 SING N N 38
06P C12 H12 SING N N 39
06P C13 H13 SING N N 40
06P N16 HN16 SING N N 41
06P C17 H17 SING N N 42
06P C17 H17A SING N N 43
06P C19 H19 SING N N 44
06P C19 H19A SING N N 45
06P C20 H20 SING N N 46
06P C20 H20A SING N N 47
06P C21 H21 SING N N 48
06P C21 H21A SING N N 49
06P C22 H22 SING N N 50
06P C23 H23 SING N N 51
06P C25 H25 SING N N 52
06P C25 H25A SING N N 53
06P C25 H25B SING N N 54
06P C26 H26 SING N N 55
06P C27 H27 SING N N 56
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
06P SMILES ACDLabs 12.01 O=C(NCc1cc[n+](cc1)C)C3N(C(=O)C(N)Cc2ccccc2)CCC3
06P SMILES_CANONICAL CACTVS 3.370 C[n+]1ccc(CNC(=O)[C@@H]2CCCN2C(=O)[C@H](N)Cc3ccccc3)cc1
06P SMILES CACTVS 3.370 C[n+]1ccc(CNC(=O)[CH]2CCCN2C(=O)[CH](N)Cc3ccccc3)cc1
06P SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C[n+]1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)[C@@H](Cc3ccccc3)N
06P SMILES "OpenEye OEToolkits" 1.7.0 C[n+]1ccc(cc1)CNC(=O)C2CCCN2C(=O)C(Cc3ccccc3)N
06P InChI InChI 1.03 InChI=1S/C21H26N4O2/c1-24-12-9-17(10-13-24)15-23-20(26)19-8-5-11-25(19)21(27)18(22)14-16-6-3-2-4-7-16/h2-4,6-7,9-10,12-13,18-19H,5,8,11,14-15,22H2,1H3/p+1/t18-,19+/m1/s1
06P InChIKey InChI 1.03 XPNLMZJVXKGMFM-MOPGFXCFSA-O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
06P "SYSTEMATIC NAME" ACDLabs 12.01 D-phenylalanyl-N-[(1-methylpyridinium-4-yl)methyl]-L-prolinamide
06P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]-N-[(1-methylpyridin-1-ium-4-yl)methyl]pyrrolidine-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
06P 'Create component' 2011-03-18 PDBJ
06P 'Other modification' 2011-03-21 PDBJ
06P 'Modify aromatic_flag' 2011-06-04 RCSB
06P 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
06P N4 N 7.678 4.242 1
06P C3 C 6.251 3.779 2
06P C5 C 5.939 2.312 3
06P O7 O 4.513 1.848 4
06P C2 C 5.136 4.782 5
06P C1 C 5.448 6.250 6
06P C8 C 6.875 6.713 7
06P C12 C 4.333 7.253 8
06P C9 C 7.187 8.180 9
06P C11 C 4.645 8.720 10
06P C10 C 6.072 9.184 11
06P N6 N 7.054 1.308 12
06P C13 C 6.897 -0.184 13
06P C14 C 5.598 -0.934 14
06P O15 O 4.299 -0.184 15
06P C19 C 8.267 -0.794 16
06P C20 C 9.271 0.321 17
06P C21 C 8.521 1.620 18
06P N16 N 5.598 -2.434 19
06P C17 C 4.299 -3.184 20
06P C18 C 4.299 -4.684 21
06P C22 C 3.000 -5.434 22
06P C23 C 3.000 -6.934 23
06P N24 N 4.299 -7.684 24
06P C25 C 4.299 -9.184 25
06P C26 C 5.598 -6.934 26
06P C27 C 5.598 -5.434 27
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
06P C1 C2 SINGLE NONE 1
06P C1 C8 DOUBLE NONE 2
06P C1 C12 SINGLE NONE 3
06P C2 C3 SINGLE NONE 4
06P C3 N4 SINGLE BEGINWEDGE 5
06P C3 C5 SINGLE NONE 6
06P C5 N6 SINGLE NONE 7
06P C5 O7 DOUBLE NONE 8
06P N6 C13 SINGLE NONE 9
06P N6 C21 SINGLE NONE 10
06P C8 C9 SINGLE NONE 11
06P C9 C10 DOUBLE NONE 12
06P C10 C11 SINGLE NONE 13
06P C11 C12 DOUBLE NONE 14
06P C13 C14 SINGLE BEGINWEDGE 15
06P C13 C19 SINGLE NONE 16
06P C14 O15 DOUBLE NONE 17
06P C14 N16 SINGLE NONE 18
06P N16 C17 SINGLE NONE 19
06P C17 C18 SINGLE NONE 20
06P C18 C22 DOUBLE NONE 21
06P C18 C27 SINGLE NONE 22
06P C19 C20 SINGLE NONE 23
06P C20 C21 SINGLE NONE 24
06P C22 C23 SINGLE NONE 25
06P C23 N24 DOUBLE NONE 26
06P N24 C25 SINGLE NONE 27
06P N24 C26 SINGLE NONE 28
06P C26 C27 DOUBLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
06P MurckoScaffold S1 scaffold 'O=C(NCc1cc[nH+]cc1)[C@@H]1CCCN1C(=O)CCc1ccccc1' InChI=1S/C20H23N3O2/c24-19(9-8-16-5-2-1-3-6-16)23-14-4-7-18(23)20(25)22-15-17-10-12-21-13-11-17/h1-3,5-6,10-13,18H,4,7-9,14-15H2,(H,22,25)/p+1/t18-/m0/s1 DWNPZZOTNMFNTK-SFHVURJKSA-O
06P amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
06P peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
06P phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
06P pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
06P C3 S1 1
06P C5 S1 1
06P O7 S1 1
06P C2 S1 1
06P C1 S1 1
06P C8 S1 1
06P C12 S1 1
06P C9 S1 1
06P C11 S1 1
06P C10 S1 1
06P N6 S1 1
06P C13 S1 1
06P C14 S1 1
06P O15 S1 1
06P C19 S1 1
06P C20 S1 1
06P C21 S1 1
06P N16 S1 1
06P C17 S1 1
06P C18 S1 1
06P C22 S1 1
06P C23 S1 1
06P N24 S1 1
06P C26 S1 1
06P C27 S1 1
06P N6 F1 1
06P C5 F1 1
06P O7 F1 1
06P C3 F1 1
06P N16 F1 2
06P C14 F1 2
06P O15 F1 2
06P C13 F1 2
06P O7 F2 1
06P C5 F2 1
06P C3 F2 1
06P N4 F2 1
06P O15 F2 2
06P C14 F2 2
06P C13 F2 2
06P N6 F2 2
06P C1 F3 1
06P C8 F3 1
06P C9 F3 1
06P C10 F3 1
06P C11 F3 1
06P C12 F3 1
06P C23 F4 1
06P C22 F4 1
06P C18 F4 1
06P C27 F4 1
06P C26 F4 1
06P N24 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 06P
_pdbe_chem_comp_rdkit_properties.exactmw 367.213
_pdbe_chem_comp_rdkit_properties.amw 367.473
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 27
_pdbe_chem_comp_rdkit_properties.NumAtoms 54
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.381
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 197.643
_pdbe_chem_comp_rdkit_properties.tpsa 79.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.579
_pdbe_chem_comp_rdkit_properties.CrippenMR 101.789
_pdbe_chem_comp_rdkit_properties.chi0v 13.105
_pdbe_chem_comp_rdkit_properties.chi1v 6.921
_pdbe_chem_comp_rdkit_properties.chi2v 2.779
_pdbe_chem_comp_rdkit_properties.chi3v 2.779
_pdbe_chem_comp_rdkit_properties.chi4v 1.645
_pdbe_chem_comp_rdkit_properties.chi0n 40.105
_pdbe_chem_comp_rdkit_properties.chi1n 20.262
_pdbe_chem_comp_rdkit_properties.chi2n 2.779
_pdbe_chem_comp_rdkit_properties.chi3n 2.779
_pdbe_chem_comp_rdkit_properties.chi4n 1.645
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.730
_pdbe_chem_comp_rdkit_properties.kappa1 4.631
_pdbe_chem_comp_rdkit_properties.kappa2 8.773
_pdbe_chem_comp_rdkit_properties.kappa3 4.917
_pdbe_chem_comp_rdkit_properties.Phi 1.505
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
06P UniChem PDBe 06P
06P UniChem ZINC ZINC000095920602
06P UniChem PubChem 56643080
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
06P N4 -2.288 -0.002 2.486 ETKDGv3 1
06P C3 -0.904 -0.013 2.003 ETKDGv3 2
06P C5 -0.261 -1.377 2.143 ETKDGv3 3
06P O7 0.636 -1.529 3.017 ETKDGv3 4
06P C2 -0.805 0.499 0.554 ETKDGv3 5
06P C1 -1.265 1.929 0.440 ETKDGv3 6
06P C8 -2.460 2.230 -0.098 ETKDGv3 7
06P C12 -0.403 3.023 0.954 ETKDGv3 8
06P C9 -2.899 3.638 -0.196 ETKDGv3 9
06P C11 -0.805 4.297 0.867 ETKDGv3 10
06P C10 -2.112 4.620 0.261 ETKDGv3 11
06P N6 -0.588 -2.479 1.276 ETKDGv3 12
06P C13 0.408 -3.447 0.845 ETKDGv3 13
06P C14 1.171 -2.883 -0.326 ETKDGv3 14
06P O15 0.652 -2.891 -1.476 ETKDGv3 15
06P C19 -0.384 -4.704 0.478 ETKDGv3 16
06P C20 -1.815 -4.232 0.237 ETKDGv3 17
06P C21 -1.947 -2.905 0.975 ETKDGv3 18
06P N16 2.451 -2.268 -0.119 ETKDGv3 19
06P C17 3.197 -1.627 -1.200 ETKDGv3 20
06P C18 2.634 -0.261 -1.483 ETKDGv3 21
06P C22 1.757 -0.066 -2.480 ETKDGv3 22
06P C23 1.198 1.280 -2.708 ETKDGv3 23
06P N24 1.545 2.284 -1.944 ETKDGv3 24
06P C25 0.988 3.613 -2.199 ETKDGv3 25
06P C26 2.488 2.092 -0.865 ETKDGv3 26
06P C27 3.010 0.883 -0.625 ETKDGv3 27
06P HN4 -2.330 -0.473 3.420 ETKDGv3 28
06P HN4A -2.910 -0.525 1.833 ETKDGv3 29
06P H3 -0.326 0.692 2.642 ETKDGv3 30
06P H2 0.254 0.445 0.224 ETKDGv3 31
06P H2A -1.384 -0.154 -0.134 ETKDGv3 32
06P H8 -3.115 1.450 -0.468 ETKDGv3 33
06P H12 0.558 2.794 1.398 ETKDGv3 34
06P H9 -3.858 3.873 -0.639 ETKDGv3 35
06P H11 -0.172 5.093 1.238 ETKDGv3 36
06P H10 -2.432 5.651 0.189 ETKDGv3 37
06P H13 1.106 -3.691 1.676 ETKDGv3 38
06P H19 -0.377 -5.406 1.341 ETKDGv3 39
06P H19A 0.027 -5.237 -0.408 ETKDGv3 40
06P H20 -1.973 -4.073 -0.853 ETKDGv3 41
06P H20A -2.553 -4.977 0.606 ETKDGv3 42
06P H21 -2.515 -3.044 1.920 ETKDGv3 43
06P H21A -2.457 -2.166 0.324 ETKDGv3 44
06P HN16 2.864 -2.262 0.840 ETKDGv3 45
06P H17 3.185 -2.270 -2.107 ETKDGv3 46
06P H17A 4.261 -1.522 -0.895 ETKDGv3 47
06P H22 1.452 -0.882 -3.123 ETKDGv3 48
06P H23 0.494 1.421 -3.520 ETKDGv3 49
06P H25 1.299 4.337 -1.416 ETKDGv3 50
06P H25A 1.343 3.987 -3.183 ETKDGv3 51
06P H25B -0.122 3.566 -2.203 ETKDGv3 52
06P H26 2.773 2.924 -0.233 ETKDGv3 53
06P H27 3.706 0.747 0.193 ETKDGv3 54
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