data_06Q
#
_chem_comp.id 06Q
_chem_comp.name
N-[(2S)-3-(4-fluorophenyl)-1-oxidanylidene-1-[[(2S,3S)-3-oxidanyl-4-oxidanylidene-1-[(3S)-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H35 F N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-09-29
_chem_comp.pdbx_modified_date 2023-06-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 614.663
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 06Q
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8GXG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBC
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
06Q C02 C1 C 0 1 N N N N N N 8.106 11.664 22.758 -3.777 -0.063 0.587 C02 06Q 1
06Q C04 C2 C 0 1 N N S N N N 7.687 14.058 23.475 -1.629 -1.189 0.350 C04 06Q 2
06Q C05 C3 C 0 1 N N N N N N 7.767 15.044 24.695 -1.780 -2.051 -0.905 C05 06Q 3
06Q C06 C4 C 0 1 Y N N N N N 6.718 14.384 25.666 -3.190 -2.576 -0.987 C06 06Q 4
06Q C07 C5 C 0 1 Y N N N N N 5.352 14.623 25.476 -3.514 -3.782 -0.393 C07 06Q 5
06Q C08 C6 C 0 1 Y N N N N N 4.460 13.994 26.331 -4.807 -4.265 -0.467 C08 06Q 6
06Q C09 C7 C 0 1 Y N N N N N 4.969 13.124 27.357 -5.778 -3.539 -1.136 C09 06Q 7
06Q C11 C8 C 0 1 Y N N N N N 6.313 12.893 27.530 -5.453 -2.332 -1.730 C11 06Q 8
06Q C12 C9 C 0 1 Y N N N N N 7.216 13.520 26.662 -4.161 -1.849 -1.651 C12 06Q 9
06Q C13 C10 C 0 1 N N N N N N 8.443 14.614 22.238 -0.191 -0.764 0.498 C13 06Q 10
06Q C15 C11 C 0 1 N N S N N N 8.461 15.637 20.005 2.184 -1.288 0.656 C15 06Q 11
06Q C16 C12 C 0 1 N N N N N N 8.016 14.790 18.722 2.601 -1.012 2.102 C16 06Q 12
06Q C17 C13 C 0 1 N N S N N N 8.420 13.305 18.942 3.980 -0.350 2.117 C17 06Q 13
06Q C18 C14 C 0 1 N N N N N N 9.836 13.200 19.055 4.482 -0.252 3.560 C18 06Q 14
06Q C19 C15 C 0 1 N N N N N N 10.331 11.831 18.830 5.721 0.651 3.583 C19 06Q 15
06Q C20 C16 C 0 1 N N N N N N 10.100 11.335 17.428 5.293 2.079 3.242 C20 06Q 16
06Q C22 C17 C 0 1 N N N N N N 7.815 12.568 17.646 3.881 1.023 1.517 C22 06Q 17
06Q C24 C18 C 0 1 N N S N N N 8.111 17.187 19.898 3.052 -2.408 0.079 C24 06Q 18
06Q C26 C19 C 0 1 N N N N N N 8.620 17.992 21.159 4.460 -1.906 -0.110 C26 06Q 19
06Q C28 C20 C 0 1 N N N N N N 10.321 19.041 22.608 6.068 -0.377 -1.117 C28 06Q 20
06Q C29 C21 C 0 1 Y N N N N N 10.377 18.396 24.023 6.062 0.783 -2.079 C29 06Q 21
06Q C30 C22 C 0 1 Y N N N N N 10.794 17.085 24.230 5.912 2.073 -1.606 C30 06Q 22
06Q C31 C23 C 0 1 Y N N N N N 10.861 16.601 25.551 5.907 3.137 -2.488 C31 06Q 23
06Q C32 C24 C 0 1 Y N N N N N 10.508 17.458 26.678 6.052 2.911 -3.844 C32 06Q 24
06Q C33 C25 C 0 1 Y N N N N N 10.106 18.767 26.464 6.202 1.621 -4.318 C33 06Q 25
06Q C34 C26 C 0 1 Y N N N N N 10.038 19.258 25.158 6.213 0.558 -3.435 C34 06Q 26
06Q C37 C27 C 0 1 Y N N N N N 8.883 10.411 23.076 -4.630 1.128 0.468 C37 06Q 27
06Q C38 C28 C 0 1 Y N N N N N 9.060 9.210 22.363 -5.945 1.184 0.801 C38 06Q 28
06Q C39 C29 C 0 1 Y N N N N N 9.955 8.419 23.191 -6.376 2.553 0.519 C39 06Q 29
06Q C40 C30 C 0 1 Y N N N N N 10.543 7.117 23.113 -7.588 3.237 0.642 C40 06Q 30
06Q C41 C31 C 0 1 Y N N N N N 11.387 6.699 24.126 -7.662 4.553 0.282 C41 06Q 31
06Q C42 C32 C 0 1 Y N N N N N 11.685 7.534 25.257 -6.543 5.213 -0.206 C42 06Q 32
06Q C43 C33 C 0 1 Y N N N N N 11.112 8.813 25.349 -5.338 4.556 -0.335 C43 06Q 33
06Q C44 C34 C 0 1 Y N N N N N 10.266 9.232 24.319 -5.238 3.218 0.026 C44 06Q 34
06Q F10 F1 F 0 1 N N N N N N 4.099 12.515 28.198 -7.042 -4.010 -1.210 F10 06Q 35
06Q N03 N1 N 0 1 N N N N N N 8.344 12.771 23.749 -2.479 -0.001 0.231 N03 06Q 36
06Q N14 N2 N 0 1 N N N N N N 7.662 15.103 21.142 0.777 -1.694 0.623 N14 06Q 37
06Q N21 N3 N 0 1 N N N N N N 8.691 11.561 16.948 4.492 2.095 2.024 N21 06Q 38
06Q N27 N4 N 0 1 N N N N N N 10.036 18.182 21.389 4.699 -0.865 -0.933 N27 06Q 39
06Q O01 O1 O 0 1 N N N N N N 7.405 11.834 21.846 -4.242 -1.104 1.012 O01 06Q 40
06Q O23 O2 O 0 1 N N N N N N 6.670 12.789 17.330 3.208 1.166 0.518 O23 06Q 41
06Q O25 O3 O 0 1 N N N N N N 8.693 17.847 18.742 3.059 -3.517 0.981 O25 06Q 42
06Q O35 O4 O 0 1 N N N N N N 7.872 18.489 21.906 5.378 -2.437 0.478 O35 06Q 43
06Q O36 O5 O 0 1 N N N N N N 9.629 14.600 22.218 0.097 0.414 0.503 O36 06Q 44
06Q O45 O6 O 0 1 Y N N N N N 9.625 10.391 24.207 -4.222 2.333 0.018 O45 06Q 45
06Q H1 H1 H 0 1 N N N N N N 6.631 13.899 23.212 -1.930 -1.765 1.225 H1 06Q 46
06Q H2 H2 H 0 1 N N N N N N 8.774 15.062 25.137 -1.565 -1.449 -1.788 H2 06Q 47
06Q H3 H3 H 0 1 N N N N N N 7.472 16.065 24.412 -1.083 -2.888 -0.857 H3 06Q 48
06Q H4 H4 H 0 1 N N N N N N 5.004 15.276 24.689 -2.756 -4.347 0.128 H4 06Q 49
06Q H5 H5 H 0 1 N N N N N N 3.397 14.155 26.228 -5.059 -5.207 -0.004 H5 06Q 50
06Q H6 H6 H 0 1 N N N N N N 6.665 12.243 28.317 -6.210 -1.766 -2.253 H6 06Q 51
06Q H7 H7 H 0 1 N N N N N N 8.278 13.344 26.755 -3.908 -0.905 -2.110 H7 06Q 52
06Q H8 H8 H 0 1 N N N N N N 9.539 15.509 20.179 2.315 -0.384 0.062 H8 06Q 53
06Q H9 H9 H 0 1 N N N N N N 8.520 15.182 17.826 1.874 -0.349 2.570 H9 06Q 54
06Q H10 H10 H 0 1 N N N N N N 6.926 14.862 18.591 2.644 -1.952 2.654 H10 06Q 55
06Q H11 H11 H 0 1 N N N N N N 7.916 12.916 19.839 4.677 -0.950 1.531 H11 06Q 56
06Q H12 H12 H 0 1 N N N N N N 10.132 13.518 20.066 3.704 0.177 4.191 H12 06Q 57
06Q H13 H13 H 0 1 N N N N N N 10.297 13.866 18.311 4.744 -1.245 3.925 H13 06Q 58
06Q H14 H14 H 0 1 N N N N N N 9.816 11.155 19.528 6.170 0.630 4.576 H14 06Q 59
06Q H15 H15 H 0 1 N N N N N N 11.412 11.813 19.032 6.444 0.298 2.847 H15 06Q 60
06Q H16 H16 H 0 1 N N N N N N 10.311 10.256 17.399 4.704 2.484 4.065 H16 06Q 61
06Q H17 H17 H 0 1 N N N N N N 10.789 11.862 16.752 6.179 2.695 3.096 H17 06Q 62
06Q H18 H18 H 0 1 N N N N N N 7.016 17.280 19.859 2.646 -2.724 -0.882 H18 06Q 63
06Q H19 H19 H 0 1 N N N N N N 11.298 19.518 22.438 6.689 -1.178 -1.518 H19 06Q 64
06Q H20 H20 H 0 1 N N N N N N 9.537 19.812 22.642 6.470 -0.051 -0.158 H20 06Q 65
06Q H21 H21 H 0 1 N N N N N N 11.060 16.452 23.396 5.799 2.250 -0.546 H21 06Q 66
06Q H22 H22 H 0 1 N N N N N N 11.177 15.584 25.732 5.789 4.145 -2.118 H22 06Q 67
06Q H23 H23 H 0 1 N N N N N N 10.560 17.070 27.685 6.047 3.743 -4.534 H23 06Q 68
06Q H24 H24 H 0 1 N N N N N N 9.848 19.401 27.299 6.315 1.445 -5.377 H24 06Q 69
06Q H25 H25 H 0 1 N N N N N N 9.734 20.279 24.984 6.334 -0.450 -3.804 H25 06Q 70
06Q H26 H26 H 0 1 N N N N N N 8.627 8.937 21.412 -6.551 0.380 1.193 H26 06Q 71
06Q H27 H27 H 0 1 N N N N N N 10.331 6.470 22.275 -8.462 2.728 1.021 H27 06Q 72
06Q H28 H28 H 0 1 N N N N N N 11.834 5.718 24.065 -8.599 5.083 0.376 H28 06Q 73
06Q H29 H29 H 0 1 N N N N N N 12.347 7.179 26.033 -6.617 6.253 -0.487 H29 06Q 74
06Q H30 H30 H 0 1 N N N N N N 11.320 9.455 26.192 -4.474 5.080 -0.716 H30 06Q 75
06Q H31 H31 H 0 1 N N N N N N 8.921 12.638 24.555 -2.107 0.830 -0.103 H31 06Q 76
06Q H32 H32 H 0 1 N N N N N N 6.662 15.087 21.140 0.541 -2.633 0.692 H32 06Q 77
06Q H33 H33 H 0 1 N N N N N N 8.338 11.044 16.168 4.399 2.937 1.553 H33 06Q 78
06Q H34 H34 H 0 1 N N N N N N 10.749 17.790 20.808 3.965 -0.440 -1.404 H34 06Q 79
06Q H35 H35 H 0 1 N N N N N N 8.444 18.764 18.742 3.408 -3.309 1.858 H35 06Q 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
06Q N21 C20 SING N N 1
06Q N21 C22 SING N N 2
06Q O23 C22 DOUB N N 3
06Q C20 C19 SING N N 4
06Q C22 C17 SING N N 5
06Q C16 C17 SING N N 6
06Q C16 C15 SING N N 7
06Q O25 C24 SING N N 8
06Q C19 C18 SING N N 9
06Q C17 C18 SING N N 10
06Q C24 C15 SING N N 11
06Q C24 C26 SING N N 12
06Q C15 N14 SING N N 13
06Q N14 C13 SING N N 14
06Q C26 N27 SING N N 15
06Q C26 O35 DOUB N N 16
06Q N27 C28 SING N N 17
06Q O01 C02 DOUB N N 18
06Q O36 C13 DOUB N N 19
06Q C13 C04 SING N N 20
06Q C38 C37 DOUB Y N 21
06Q C38 C39 SING Y N 22
06Q C28 C29 SING N N 23
06Q C02 C37 SING N N 24
06Q C02 N03 SING N N 25
06Q C37 O45 SING Y N 26
06Q C40 C39 DOUB Y N 27
06Q C40 C41 SING Y N 28
06Q C39 C44 SING Y N 29
06Q C04 N03 SING N N 30
06Q C04 C05 SING N N 31
06Q C29 C30 DOUB Y N 32
06Q C29 C34 SING Y N 33
06Q C41 C42 DOUB Y N 34
06Q O45 C44 SING Y N 35
06Q C30 C31 SING Y N 36
06Q C44 C43 DOUB Y N 37
06Q C05 C06 SING N N 38
06Q C34 C33 DOUB Y N 39
06Q C42 C43 SING Y N 40
06Q C07 C06 DOUB Y N 41
06Q C07 C08 SING Y N 42
06Q C31 C32 DOUB Y N 43
06Q C06 C12 SING Y N 44
06Q C08 C09 DOUB Y N 45
06Q C33 C32 SING Y N 46
06Q C12 C11 DOUB Y N 47
06Q C09 C11 SING Y N 48
06Q C09 F10 SING N N 49
06Q C04 H1 SING N N 50
06Q C05 H2 SING N N 51
06Q C05 H3 SING N N 52
06Q C07 H4 SING N N 53
06Q C08 H5 SING N N 54
06Q C11 H6 SING N N 55
06Q C12 H7 SING N N 56
06Q C15 H8 SING N N 57
06Q C16 H9 SING N N 58
06Q C16 H10 SING N N 59
06Q C17 H11 SING N N 60
06Q C18 H12 SING N N 61
06Q C18 H13 SING N N 62
06Q C19 H14 SING N N 63
06Q C19 H15 SING N N 64
06Q C20 H16 SING N N 65
06Q C20 H17 SING N N 66
06Q C24 H18 SING N N 67
06Q C28 H19 SING N N 68
06Q C28 H20 SING N N 69
06Q C30 H21 SING N N 70
06Q C31 H22 SING N N 71
06Q C32 H23 SING N N 72
06Q C33 H24 SING N N 73
06Q C34 H25 SING N N 74
06Q C38 H26 SING N N 75
06Q C40 H27 SING N N 76
06Q C41 H28 SING N N 77
06Q C42 H29 SING N N 78
06Q C43 H30 SING N N 79
06Q N03 H31 SING N N 80
06Q N14 H32 SING N N 81
06Q N21 H33 SING N N 82
06Q N27 H34 SING N N 83
06Q O25 H35 SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
06Q InChI InChI 1.06 InChI=1S/C34H35FN4O6/c35-25-14-12-21(13-15-25)17-27(39-33(43)29-19-23-9-4-5-11-28(23)45-29)32(42)38-26(18-24-10-6-16-36-31(24)41)30(40)34(44)37-20-22-7-2-1-3-8-22/h1-5,7-9,11-15,19,24,26-27,30,40H,6,10,16-18,20H2,(H,36,41)(H,37,44)(H,38,42)(H,39,43)/t24-,26-,27-,30-/m0/s1
06Q InChIKey InChI 1.06 RXCWWLZLSPDOKP-LRVPPHGTSA-N
06Q SMILES_CANONICAL CACTVS 3.385 O[C@@H]([C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@H](Cc2ccc(F)cc2)NC(=O)c3oc4ccccc4c3)C(=O)NCc5ccccc5
06Q SMILES CACTVS 3.385 O[CH]([CH](C[CH]1CCCNC1=O)NC(=O)[CH](Cc2ccc(F)cc2)NC(=O)c3oc4ccccc4c3)C(=O)NCc5ccccc5
06Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)CNC(=O)[C@H]([C@H](C[C@@H]2CCCNC2=O)NC(=O)[C@H](Cc3ccc(cc3)F)NC(=O)c4cc5ccccc5o4)O
06Q SMILES "OpenEye OEToolkits" 2.0.7 c1ccc(cc1)CNC(=O)C(C(CC2CCCNC2=O)NC(=O)C(Cc3ccc(cc3)F)NC(=O)c4cc5ccccc5o4)O
#
_pdbx_chem_comp_identifier.comp_id 06Q
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[(2~{S})-3-(4-fluorophenyl)-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepiperidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-1-benzofuran-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
06Q 'Create component' 2022-09-29 PDBC
06Q 'Initial release' 2023-06-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
06Q C02 C 9.393 5.096 1
06Q C04 C 11.643 3.797 2
06Q C05 C 12.393 5.096 3
06Q C06 C 13.893 5.096 4
06Q C07 C 14.643 6.395 5
06Q C08 C 16.143 6.395 6
06Q C09 C 16.893 5.096 7
06Q C11 C 16.143 3.797 8
06Q C12 C 14.643 3.797 9
06Q C13 C 12.393 2.498 10
06Q C15 C 12.393 -0.101 11
06Q C16 C 13.893 -0.101 12
06Q C17 C 14.643 -1.399 13
06Q C18 C 13.893 -2.699 14
06Q C19 C 14.643 -3.998 15
06Q C20 C 16.143 -3.998 16
06Q C22 C 16.143 -1.399 17
06Q C24 C 11.643 -1.399 18
06Q C26 C 10.143 -1.399 19
06Q C28 C 7.893 -2.699 20
06Q C29 C 7.143 -3.998 21
06Q C30 C 7.893 -5.297 22
06Q C31 C 7.143 -6.596 23
06Q C32 C 5.643 -6.596 24
06Q C33 C 4.893 -5.297 25
06Q C34 C 5.643 -3.998 26
06Q C37 C 7.893 5.096 27
06Q C38 C 7.018 3.889 28
06Q C39 C 5.598 4.346 29
06Q C40 C 4.299 3.596 30
06Q C41 C 3.000 4.346 31
06Q C42 C 3.000 5.846 32
06Q C43 C 4.299 6.596 33
06Q C44 C 5.598 5.846 34
06Q F10 F 18.393 5.096 35
06Q N03 N 10.143 3.797 36
06Q N14 N 11.643 1.198 37
06Q N21 N 16.893 -2.699 38
06Q N27 N 9.393 -2.699 39
06Q O01 O 10.143 6.395 40
06Q O23 O 16.893 -0.101 41
06Q O25 O 12.393 -2.699 42
06Q O35 O 9.393 -0.101 43
06Q O36 O 13.893 2.498 44
06Q O45 O 7.018 6.303 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
06Q N21 C20 SINGLE NONE 1
06Q N21 C22 SINGLE NONE 2
06Q O23 C22 DOUBLE NONE 3
06Q C20 C19 SINGLE NONE 4
06Q C22 C17 SINGLE NONE 5
06Q C17 C16 SINGLE BEGINWEDGE 6
06Q C15 C16 SINGLE BEGINWEDGE 7
06Q C24 O25 SINGLE BEGINDASH 8
06Q C19 C18 SINGLE NONE 9
06Q C17 C18 SINGLE NONE 10
06Q C24 C15 SINGLE NONE 11
06Q C24 C26 SINGLE NONE 12
06Q C15 N14 SINGLE NONE 13
06Q N14 C13 SINGLE NONE 14
06Q C26 N27 SINGLE NONE 15
06Q C26 O35 DOUBLE NONE 16
06Q N27 C28 SINGLE NONE 17
06Q O01 C02 DOUBLE NONE 18
06Q O36 C13 DOUBLE NONE 19
06Q C13 C04 SINGLE NONE 20
06Q C38 C37 DOUBLE NONE 21
06Q C38 C39 SINGLE NONE 22
06Q C28 C29 SINGLE NONE 23
06Q C02 C37 SINGLE NONE 24
06Q C02 N03 SINGLE NONE 25
06Q C37 O45 SINGLE NONE 26
06Q C40 C39 DOUBLE NONE 27
06Q C40 C41 SINGLE NONE 28
06Q C39 C44 SINGLE NONE 29
06Q C04 N03 SINGLE NONE 30
06Q C04 C05 SINGLE BEGINWEDGE 31
06Q C29 C30 DOUBLE NONE 32
06Q C29 C34 SINGLE NONE 33
06Q C41 C42 DOUBLE NONE 34
06Q O45 C44 SINGLE NONE 35
06Q C30 C31 SINGLE NONE 36
06Q C44 C43 DOUBLE NONE 37
06Q C05 C06 SINGLE NONE 38
06Q C34 C33 DOUBLE NONE 39
06Q C42 C43 SINGLE NONE 40
06Q C07 C06 DOUBLE NONE 41
06Q C07 C08 SINGLE NONE 42
06Q C31 C32 DOUBLE NONE 43
06Q C06 C12 SINGLE NONE 44
06Q C08 C09 DOUBLE NONE 45
06Q C33 C32 SINGLE NONE 46
06Q C12 C11 DOUBLE NONE 47
06Q C09 C11 SINGLE NONE 48
06Q C09 F10 SINGLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
06Q MurckoScaffold S1 scaffold 'O=C(C[C@H](C[C@@H]1CCCNC1=O)NC(=O)[C@H](Cc1ccccc1)NC(=O)c1cc2ccccc2o1)NCc1ccccc1' InChI=1S/C34H36N4O5/c39-31(36-22-24-12-5-2-6-13-24)21-27(19-26-15-9-17-35-32(26)40)37-33(41)28(18-23-10-3-1-4-11-23)38-34(42)30-20-25-14-7-8-16-29(25)43-30/h1-8,10-14,16,20,26-28H,9,15,17-19,21-22H2,(H,35,40)(H,36,39)(H,37,41)(H,38,42)/t26-,27-,28-/m0/s1 WHAAYHKRAXFBTK-KCHLEUMXSA-N
06Q amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
06Q furan F2 fragment c1ccoc1 InChI=1S/C4H4O/c1-2-4-5-3-1/h1-4H YLQBMQCUIZJEEH-UHFFFAOYSA-N
06Q peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
06Q phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
06Q Z26769872 F5 fragment O=C(NCCc1ccc(F)cc1)c1ccco1 InChI=1S/C13H12FNO2/c14-11-5-3-10(4-6-11)7-8-15-13(16)12-2-1-9-17-12/h1-6,9H,7-8H2,(H,15,16) GSMVTQDRELNXRQ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
06Q C02 S1 1
06Q C04 S1 1
06Q C05 S1 1
06Q C06 S1 1
06Q C07 S1 1
06Q C08 S1 1
06Q C09 S1 1
06Q C11 S1 1
06Q C12 S1 1
06Q C13 S1 1
06Q C15 S1 1
06Q C16 S1 1
06Q C17 S1 1
06Q C18 S1 1
06Q C19 S1 1
06Q C20 S1 1
06Q C22 S1 1
06Q C24 S1 1
06Q C26 S1 1
06Q C28 S1 1
06Q C29 S1 1
06Q C30 S1 1
06Q C31 S1 1
06Q C32 S1 1
06Q C33 S1 1
06Q C34 S1 1
06Q C37 S1 1
06Q C38 S1 1
06Q C39 S1 1
06Q C40 S1 1
06Q C41 S1 1
06Q C42 S1 1
06Q C43 S1 1
06Q C44 S1 1
06Q N03 S1 1
06Q N14 S1 1
06Q N21 S1 1
06Q N27 S1 1
06Q O01 S1 1
06Q O23 S1 1
06Q O35 S1 1
06Q O36 S1 1
06Q O45 S1 1
06Q N03 F1 1
06Q C02 F1 1
06Q O01 F1 1
06Q C37 F1 1
06Q N14 F1 2
06Q C13 F1 2
06Q O36 F1 2
06Q C04 F1 2
06Q N21 F1 3
06Q C22 F1 3
06Q O23 F1 3
06Q C17 F1 3
06Q N27 F1 4
06Q C26 F1 4
06Q O35 F1 4
06Q C24 F1 4
06Q C37 F2 1
06Q C38 F2 1
06Q C39 F2 1
06Q C44 F2 1
06Q O45 F2 1
06Q O36 F3 1
06Q C13 F3 1
06Q C04 F3 1
06Q N03 F3 1
06Q C06 F4 1
06Q C07 F4 1
06Q C08 F4 1
06Q C09 F4 1
06Q C11 F4 1
06Q C12 F4 1
06Q C29 F4 2
06Q C30 F4 2
06Q C31 F4 2
06Q C32 F4 2
06Q C33 F4 2
06Q C34 F4 2
06Q C39 F4 3
06Q C40 F4 3
06Q C41 F4 3
06Q C42 F4 3
06Q C43 F4 3
06Q C44 F4 3
06Q F10 F5 1
06Q C09 F5 1
06Q C08 F5 1
06Q C07 F5 1
06Q C06 F5 1
06Q C05 F5 1
06Q C04 F5 1
06Q N03 F5 1
06Q C02 F5 1
06Q O01 F5 1
06Q C37 F5 1
06Q C38 F5 1
06Q C39 F5 1
06Q C44 F5 1
06Q O45 F5 1
06Q C12 F5 1
06Q C11 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 06Q
_pdbe_chem_comp_rdkit_properties.exactmw 614.254
_pdbe_chem_comp_rdkit_properties.amw 614.674
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.294
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 308.423
_pdbe_chem_comp_rdkit_properties.tpsa 149.770
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.399
_pdbe_chem_comp_rdkit_properties.CrippenMR 161.145
_pdbe_chem_comp_rdkit_properties.chi0v 21.616
_pdbe_chem_comp_rdkit_properties.chi1v 11.657
_pdbe_chem_comp_rdkit_properties.chi2v 4.794
_pdbe_chem_comp_rdkit_properties.chi3v 4.794
_pdbe_chem_comp_rdkit_properties.chi4v 2.900
_pdbe_chem_comp_rdkit_properties.chi0n 56.616
_pdbe_chem_comp_rdkit_properties.chi1n 28.854
_pdbe_chem_comp_rdkit_properties.chi2n 4.794
_pdbe_chem_comp_rdkit_properties.chi3n 4.794
_pdbe_chem_comp_rdkit_properties.chi4n 2.900
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.030
_pdbe_chem_comp_rdkit_properties.kappa1 9.734
_pdbe_chem_comp_rdkit_properties.kappa2 14.630
_pdbe_chem_comp_rdkit_properties.kappa3 8.329
_pdbe_chem_comp_rdkit_properties.Phi 3.165
#
_pdbe_chem_comp_external_mappings.comp_id 06Q
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 06Q
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
06Q C02 3.015 -0.339 -0.986 ETKDGv3 1
06Q C04 1.062 1.072 -1.863 ETKDGv3 2
06Q C05 1.483 1.158 -3.346 ETKDGv3 3
06Q C06 2.478 2.268 -3.569 ETKDGv3 4
06Q C07 2.065 3.541 -3.713 ETKDGv3 5
06Q C08 3.051 4.628 -3.886 ETKDGv3 6
06Q C09 4.361 4.353 -3.887 ETKDGv3 7
06Q C11 4.823 2.961 -3.715 ETKDGv3 8
06Q C12 3.933 1.972 -3.565 ETKDGv3 9
06Q C13 0.023 0.009 -1.604 ETKDGv3 10
06Q C15 -1.420 -1.211 0.108 ETKDGv3 11
06Q C16 -0.487 -2.242 0.800 ETKDGv3 12
06Q C17 -1.066 -3.633 1.180 ETKDGv3 13
06Q C18 -1.758 -4.346 0.001 ETKDGv3 14
06Q C19 -2.366 -5.674 0.455 ETKDGv3 15
06Q C20 -3.463 -5.421 1.492 ETKDGv3 16
06Q C22 -1.928 -3.622 2.422 ETKDGv3 17
06Q C24 -2.573 -0.699 1.019 ETKDGv3 18
06Q C26 -3.197 0.565 0.471 ETKDGv3 19
06Q C28 -3.543 3.074 0.628 ETKDGv3 20
06Q C29 -5.019 3.116 0.912 ETKDGv3 21
06Q C30 -5.921 2.994 -0.080 ETKDGv3 22
06Q C31 -7.367 3.014 0.224 ETKDGv3 23
06Q C32 -7.786 3.147 1.488 ETKDGv3 24
06Q C33 -6.803 3.274 2.582 ETKDGv3 25
06Q C34 -5.492 3.259 2.311 ETKDGv3 26
06Q C37 4.216 -0.423 -0.139 ETKDGv3 27
06Q C38 5.012 -1.500 -0.050 ETKDGv3 28
06Q C39 6.072 -1.159 0.884 ETKDGv3 29
06Q C40 7.121 -1.848 1.336 ETKDGv3 30
06Q C41 8.020 -1.166 2.308 ETKDGv3 31
06Q C42 7.764 0.103 2.703 ETKDGv3 32
06Q C43 6.580 0.833 2.171 ETKDGv3 33
06Q C44 5.800 0.187 1.303 ETKDGv3 34
06Q F10 5.266 5.351 -4.042 ETKDGv3 35
06Q N03 2.226 0.862 -0.994 ETKDGv3 36
06Q N14 -0.585 -0.076 -0.307 ETKDGv3 37
06Q N21 -2.979 -4.584 2.590 ETKDGv3 38
06Q N27 -2.971 1.824 1.122 ETKDGv3 39
06Q O01 2.686 -1.324 -1.702 ETKDGv3 40
06Q O23 -1.656 -2.839 3.372 ETKDGv3 41
06Q O25 -3.570 -1.674 1.193 ETKDGv3 42
06Q O35 -3.883 0.513 -0.586 ETKDGv3 43
06Q O36 -0.288 -0.817 -2.506 ETKDGv3 44
06Q O45 4.656 0.635 0.670 ETKDGv3 45
06Q H1 0.595 2.046 -1.594 ETKDGv3 46
06Q H2 0.583 1.339 -3.975 ETKDGv3 47
06Q H3 1.921 0.194 -3.682 ETKDGv3 48
06Q H4 1.009 3.784 -3.697 ETKDGv3 49
06Q H5 2.708 5.648 -4.008 ETKDGv3 50
06Q H6 5.883 2.741 -3.710 ETKDGv3 51
06Q H7 4.280 0.955 -3.436 ETKDGv3 52
06Q H8 -1.870 -1.663 -0.799 ETKDGv3 53
06Q H9 0.361 -2.432 0.106 ETKDGv3 54
06Q H10 -0.030 -1.774 1.699 ETKDGv3 55
06Q H11 -0.186 -4.260 1.449 ETKDGv3 56
06Q H12 -2.571 -3.726 -0.427 ETKDGv3 57
06Q H13 -1.015 -4.539 -0.803 ETKDGv3 58
06Q H14 -2.804 -6.200 -0.421 ETKDGv3 59
06Q H15 -1.576 -6.325 0.891 ETKDGv3 60
06Q H16 -4.328 -4.918 1.008 ETKDGv3 61
06Q H17 -3.812 -6.394 1.899 ETKDGv3 62
06Q H18 -2.150 -0.470 2.021 ETKDGv3 63
06Q H19 -3.325 3.185 -0.457 ETKDGv3 64
06Q H20 -3.058 3.929 1.147 ETKDGv3 65
06Q H21 -5.603 2.877 -1.108 ETKDGv3 66
06Q H22 -8.087 2.919 -0.580 ETKDGv3 67
06Q H23 -8.845 3.160 1.711 ETKDGv3 68
06Q H24 -7.145 3.377 3.604 ETKDGv3 69
06Q H25 -4.776 3.349 3.118 ETKDGv3 70
06Q H26 4.887 -2.439 -0.575 ETKDGv3 71
06Q H27 7.311 -2.862 1.009 ETKDGv3 72
06Q H28 8.882 -1.691 2.698 ETKDGv3 73
06Q H29 8.421 0.592 3.409 ETKDGv3 74
06Q H30 6.360 1.848 2.476 ETKDGv3 75
06Q H31 2.490 1.640 -0.348 ETKDGv3 76
06Q H32 -0.271 0.600 0.427 ETKDGv3 77
06Q H33 -3.530 -4.571 3.477 ETKDGv3 78
06Q H34 -2.356 1.861 1.966 ETKDGv3 79
06Q H35 -3.945 -1.894 0.300 ETKDGv3 80
#