data_09V
#
_chem_comp.id 09V
_chem_comp.name cyclopropylmethanol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H8 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-11-16
_chem_comp.pdbx_modified_date 2012-12-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 72.106
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 09V
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3UGL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
09V O1 O1 O 0 1 N N N N N N -9.883 -4.189 15.175 2.062 0.208 -0.179 O1 09V 1
09V C1 C1 C 0 1 N N N N N N -10.181 -2.990 15.831 0.894 -0.382 0.397 C1 09V 2
09V C2 C2 C 0 1 N N N N N N -11.537 -2.800 16.365 -0.330 -0.014 -0.443 C2 09V 3
09V C3 C3 C 0 1 N N N N N N -11.509 -1.681 17.336 -1.668 -0.647 -0.057 C3 09V 4
09V C4 C4 C 0 1 N N N N N N -12.012 -1.461 15.959 -1.415 0.836 0.222 C4 09V 5
09V H1 H1 H 0 1 N N N N N N -8.979 -4.175 14.884 2.878 0.016 0.303 H1 09V 6
09V H2 H2 H 0 1 N N N N N N -9.484 -2.901 16.677 1.008 -1.465 0.419 H2 09V 7
09V H3 H3 H 0 1 N N N N N N -9.996 -2.174 15.116 0.763 -0.009 1.413 H3 09V 8
09V H4 H4 H 0 1 N N N N N N -12.233 -3.643 16.484 -0.140 0.153 -1.504 H4 09V 9
09V H5 H5 H 0 1 N N N N N N -10.548 -1.246 17.647 -2.358 -0.896 -0.863 H5 09V 10
09V H6 H6 H 0 1 N N N N N N -12.208 -1.672 18.185 -1.676 -1.326 0.795 H6 09V 11
09V H7 H7 H 0 1 N N N N N N -11.424 -0.861 15.248 -1.256 1.132 1.259 H7 09V 12
09V H8 H8 H 0 1 N N N N N N -13.084 -1.287 15.787 -1.938 1.562 -0.400 H8 09V 13
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
09V O1 C1 SING N N 1
09V C1 C2 SING N N 2
09V C4 C2 SING N N 3
09V C4 C3 SING N N 4
09V C2 C3 SING N N 5
09V O1 H1 SING N N 6
09V C1 H2 SING N N 7
09V C1 H3 SING N N 8
09V C2 H4 SING N N 9
09V C3 H5 SING N N 10
09V C3 H6 SING N N 11
09V C4 H7 SING N N 12
09V C4 H8 SING N N 13
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
09V SMILES ACDLabs 12.01 OCC1CC1
09V InChI InChI 1.03 InChI=1S/C4H8O/c5-3-4-1-2-4/h4-5H,1-3H2
09V InChIKey InChI 1.03 GUDMZGLFZNLYEY-UHFFFAOYSA-N
09V SMILES_CANONICAL CACTVS 3.370 OCC1CC1
09V SMILES CACTVS 3.370 OCC1CC1
09V SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C1CC1CO
09V SMILES "OpenEye OEToolkits" 1.7.6 C1CC1CO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
09V "SYSTEMATIC NAME" ACDLabs 12.01 cyclopropylmethanol
09V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 cyclopropylmethanol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
09V 'Create component' 2011-11-16 RCSB
09V 'Initial release' 2012-12-07 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
09V O1 O 6.549 -1.024 1
09V C1 C 5.799 0.275 2
09V C2 C 4.299 0.275 3
09V C3 C 3.000 1.024 4
09V C4 C 3.000 -0.475 5
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
09V O1 C1 SINGLE NONE 1
09V C1 C2 SINGLE NONE 2
09V C4 C2 SINGLE NONE 3
09V C4 C3 SINGLE NONE 4
09V C2 C3 SINGLE NONE 5
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
09V MurckoScaffold S1 scaffold C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
09V cyclopropane F1 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
09V C2 S1 1
09V C3 S1 1
09V C4 S1 1
09V C2 F1 1
09V C4 F1 1
09V C3 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 09V
_pdbe_chem_comp_rdkit_properties.exactmw 72.058
_pdbe_chem_comp_rdkit_properties.amw 72.107
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 5
_pdbe_chem_comp_rdkit_properties.NumAtoms 13
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 42.949
_pdbe_chem_comp_rdkit_properties.tpsa 20.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.389
_pdbe_chem_comp_rdkit_properties.CrippenMR 19.810
_pdbe_chem_comp_rdkit_properties.chi0v 2.408
_pdbe_chem_comp_rdkit_properties.chi1v 1.204
_pdbe_chem_comp_rdkit_properties.chi2v 0.352
_pdbe_chem_comp_rdkit_properties.chi3v 0.352
_pdbe_chem_comp_rdkit_properties.chi4v 0.082
_pdbe_chem_comp_rdkit_properties.chi0n 10.408
_pdbe_chem_comp_rdkit_properties.chi1n 5.112
_pdbe_chem_comp_rdkit_properties.chi2n 0.352
_pdbe_chem_comp_rdkit_properties.chi3n 0.352
_pdbe_chem_comp_rdkit_properties.chi4n 0.082
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.040
_pdbe_chem_comp_rdkit_properties.kappa1 0.463
_pdbe_chem_comp_rdkit_properties.kappa2 0.977
_pdbe_chem_comp_rdkit_properties.kappa3 0.618
_pdbe_chem_comp_rdkit_properties.Phi 0.090
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
09V UniChem PDBe 09V
09V UniChem ZINC ZINC000001760657
09V UniChem eMolecules 513894
09V UniChem NMRShiftDB 20209887
09V UniChem ACTor 2516-33-8
09V UniChem Nikkaji J175I
09V UniChem BRENDA 122874
09V UniChem ChemicalBook CB1254806
09V UniChem 'EPA CompTox Dashboard' DTXSID2051922
09V UniChem SureChEMBL SCHEMBL4610
09V UniChem 'PubChem TPHARMA' 15140924
09V UniChem PubChem 75644
09V UniChem Mcule MCULE-4492474357
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
09V O1 1.584 0.767 0.636 ETKDGv3 1
09V C1 0.934 -0.451 0.894 ETKDGv3 2
09V C2 -0.386 -0.610 0.116 ETKDGv3 3
09V C3 -0.506 0.090 -1.231 ETKDGv3 4
09V C4 -1.240 0.642 -0.017 ETKDGv3 5
09V H1 2.247 0.595 -0.084 ETKDGv3 6
09V H2 0.703 -0.501 1.978 ETKDGv3 7
09V H3 1.597 -1.315 0.660 ETKDGv3 8
09V H4 -0.963 -1.554 0.219 ETKDGv3 9
09V H5 0.348 0.716 -1.561 ETKDGv3 10
09V H6 -1.173 -0.421 -1.958 ETKDGv3 11
09V H7 -2.335 0.454 -0.032 ETKDGv3 12
09V H8 -0.810 1.585 0.381 ETKDGv3 13
#