data_0A1
#
_chem_comp.id 0A1
_chem_comp.name O-methyl-L-tyrosine
_chem_comp.type "L-PEPTIDE LINKING"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C10 H13 N O3"
_chem_comp.mon_nstd_parent_comp_id TYR
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-11-09
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 195.215
_chem_comp.one_letter_code Y
_chem_comp.three_letter_code 0A1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ATL
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0A1 N N N 0 1 N N N Y Y N 2.996 24.288 1.416 1.926 1.356 0.957 N 0A1 1
0A1 CA CA C 0 1 N N S Y N N 3.076 25.718 1.656 2.098 -0.006 0.434 CA 0A1 2
0A1 CB CB C 0 1 N N N N N N 1.753 26.233 2.249 1.305 -0.157 -0.866 CB 0A1 3
0A1 CG CG C 0 1 Y N N N N N 1.229 25.499 3.471 -0.168 -0.024 -0.575 CG 0A1 4
0A1 CD1 CD1 C 0 1 Y N N N N N 1.887 24.384 3.984 -0.771 1.219 -0.622 CD1 0A1 5
0A1 CE1 CE1 C 0 1 Y N N N N N 1.430 23.741 5.113 -2.121 1.343 -0.354 CE1 0A1 6
0A1 CZ CZ C 0 1 Y N N N N N 0.296 24.204 5.753 -2.871 0.220 -0.039 CZ 0A1 7
0A1 OH OH O 0 1 N N N N N N -0.147 23.545 6.882 -4.199 0.340 0.224 OH 0A1 8
0A1 CM CM C 0 1 N N N N N N 0.366 23.343 8.201 -4.908 -0.860 0.541 CM 0A1 9
0A1 CE2 CE2 C 0 1 Y N N N N N -0.382 25.312 5.264 -2.263 -1.026 0.007 CE2 0A1 10
0A1 CD2 CD2 C 0 1 Y N N N N N 0.086 25.947 4.128 -0.914 -1.146 -0.266 CD2 0A1 11
0A1 C C C 0 1 N N N Y N Y 4.287 26.030 2.551 3.558 -0.261 0.164 C 0A1 12
0A1 O O O 0 1 N N N Y N Y 4.793 25.085 3.184 4.319 0.669 0.031 O 0A1 13
0A1 OXT OXT O 0 1 N Y N Y N Y 4.782 27.169 2.561 4.014 -1.520 0.071 OXT 0A1 14
0A1 H HN1 H 0 1 N N N Y Y N 2.978 24.115 0.431 2.257 2.042 0.295 HN1 0A1 15
0A1 H2 HN2 H 0 1 N Y N Y Y N 3.793 23.838 1.818 0.964 1.529 1.206 HN2 0A1 16
0A1 HA HA H 0 1 N N N Y N N 3.227 26.248 0.704 1.733 -0.725 1.167 HA 0A1 17
0A1 HBC1 HBC1 H 0 0 N N N N N N 1.914 27.281 2.543 1.608 0.619 -1.568 HBC1 0A1 18
0A1 HBC2 HBC2 H 0 0 N N N N N N 0.997 26.079 1.465 1.502 -1.137 -1.300 HBC2 0A1 19
0A1 HXT HXT H 0 1 N Y N Y N Y 5.561 27.172 3.105 4.959 -1.633 -0.103 HXT 0A1 20
0A1 HD1 HD1 H 0 1 N N N N N N 2.773 24.016 3.487 -0.187 2.093 -0.867 HD1 0A1 21
0A1 HD2 HD2 H 0 1 N N N N N N -0.445 26.806 3.744 -0.442 -2.117 -0.235 HD2 0A1 22
0A1 HE1 HE1 H 0 1 N N N N N N 1.955 22.879 5.496 -2.592 2.315 -0.391 HE1 0A1 23
0A1 HE2 HE2 H 0 1 N N N N N N -1.267 25.675 5.766 -2.845 -1.903 0.252 HE2 0A1 24
0A1 HMC1 HMC1 H 0 0 N N N N N N 1.464 23.291 8.164 -5.956 -0.624 0.728 HMC1 0A1 25
0A1 HMC2 HMC2 H 0 0 N N N N N N 0.060 24.180 8.845 -4.837 -1.556 -0.295 HMC2 0A1 26
0A1 HMC3 HMC3 H 0 0 N N N N N N -0.032 22.402 8.609 -4.473 -1.314 1.431 HMC3 0A1 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0A1 N CA SING N N 1
0A1 N H SING N N 2
0A1 N H2 SING N N 3
0A1 CA C SING N N 4
0A1 CA CB SING N N 5
0A1 CA HA SING N N 6
0A1 CB CG SING N N 7
0A1 CB HBC1 SING N N 8
0A1 CB HBC2 SING N N 9
0A1 CG CD1 SING Y N 10
0A1 CG CD2 DOUB Y N 11
0A1 CD1 CE1 DOUB Y N 12
0A1 CD1 HD1 SING N N 13
0A1 CE1 CZ SING Y N 14
0A1 CE1 HE1 SING N N 15
0A1 CZ OH SING N N 16
0A1 OH CM SING N N 17
0A1 CM HMC1 SING N N 18
0A1 CM HMC2 SING N N 19
0A1 CM HMC3 SING N N 20
0A1 CE2 CZ DOUB Y N 21
0A1 CE2 HE2 SING N N 22
0A1 CD2 CE2 SING Y N 23
0A1 CD2 HD2 SING N N 24
0A1 C OXT SING N N 25
0A1 C O DOUB N N 26
0A1 HXT OXT SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0A1 SMILES ACDLabs 10.04 O=C(O)C(N)Cc1ccc(OC)cc1
0A1 SMILES_CANONICAL CACTVS 3.341 COc1ccc(C[C@H](N)C(O)=O)cc1
0A1 SMILES CACTVS 3.341 COc1ccc(C[CH](N)C(O)=O)cc1
0A1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 COc1ccc(cc1)C[C@@H](C(=O)O)N
0A1 SMILES "OpenEye OEToolkits" 1.5.0 COc1ccc(cc1)CC(C(=O)O)N
0A1 InChI InChI 1.03 InChI=1S/C10H13NO3/c1-14-8-4-2-7(3-5-8)6-9(11)10(12)13/h2-5,9H,6,11H2,1H3,(H,12,13)/t9-/m0/s1
0A1 InChIKey InChI 1.03 GEYBMYRBIABFTA-VIFPVBQESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0A1 "SYSTEMATIC NAME" ACDLabs 10.04 O-methyl-L-tyrosine
0A1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-(4-methoxyphenyl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0A1 'Create component' 2007-11-09 RCSB
0A1 'Modify descriptor' 2011-06-04 RCSB
0A1 'Modify backbone' 2023-11-03 PDBE
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0A1 N N 6.897 1.410 1
0A1 CA C 5.598 2.160 2
0A1 CB C 4.299 1.410 3
0A1 CG C 4.299 -0.090 4
0A1 CD1 C 3.000 -0.840 5
0A1 CE1 C 3.000 -2.340 6
0A1 CZ C 4.299 -3.090 7
0A1 OH O 4.299 -4.590 8
0A1 CM C 3.000 -5.340 9
0A1 CE2 C 5.598 -2.340 10
0A1 CD2 C 5.598 -0.840 11
0A1 C C 5.598 3.660 12
0A1 O O 4.299 4.410 13
0A1 OXT O 6.897 4.410 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0A1 CA N SINGLE BEGINWEDGE 1
0A1 CA C SINGLE NONE 2
0A1 CA CB SINGLE NONE 3
0A1 CB CG SINGLE NONE 4
0A1 CG CD1 DOUBLE NONE 5
0A1 CG CD2 SINGLE NONE 6
0A1 CD1 CE1 SINGLE NONE 7
0A1 CE1 CZ DOUBLE NONE 8
0A1 CZ OH SINGLE NONE 9
0A1 OH CM SINGLE NONE 10
0A1 CE2 CZ SINGLE NONE 11
0A1 CD2 CE2 DOUBLE NONE 12
0A1 C OXT SINGLE NONE 13
0A1 C O DOUBLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0A1 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
0A1 peptide F1 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
0A1 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0A1 CG S1 1
0A1 CD1 S1 1
0A1 CE1 S1 1
0A1 CZ S1 1
0A1 CE2 S1 1
0A1 CD2 S1 1
0A1 O F1 1
0A1 C F1 1
0A1 CA F1 1
0A1 N F1 1
0A1 CG F2 1
0A1 CD1 F2 1
0A1 CE1 F2 1
0A1 CZ F2 1
0A1 CE2 F2 1
0A1 CD2 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0A1
_pdbe_chem_comp_rdkit_properties.exactmw 195.090
_pdbe_chem_comp_rdkit_properties.amw 195.218
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 100.768
_pdbe_chem_comp_rdkit_properties.tpsa 72.550
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.132
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.433
_pdbe_chem_comp_rdkit_properties.chi0v 6.672
_pdbe_chem_comp_rdkit_properties.chi1v 3.290
_pdbe_chem_comp_rdkit_properties.chi2v 1.141
_pdbe_chem_comp_rdkit_properties.chi3v 1.141
_pdbe_chem_comp_rdkit_properties.chi4v 0.584
_pdbe_chem_comp_rdkit_properties.chi0n 19.672
_pdbe_chem_comp_rdkit_properties.chi1n 9.593
_pdbe_chem_comp_rdkit_properties.chi2n 1.141
_pdbe_chem_comp_rdkit_properties.chi3n 1.141
_pdbe_chem_comp_rdkit_properties.chi4n 0.584
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.550
_pdbe_chem_comp_rdkit_properties.kappa1 2.520
_pdbe_chem_comp_rdkit_properties.kappa2 4.621
_pdbe_chem_comp_rdkit_properties.kappa3 2.741
_pdbe_chem_comp_rdkit_properties.Phi 0.832
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0A1 UniChem PDBe 0A1
0A1 UniChem ChEBI 193554
0A1 UniChem ChEBI 49336
0A1 UniChem ZINC ZINC000000388371
0A1 UniChem eMolecules 484041
0A1 UniChem fdasrs SCX8EOU7CO
0A1 UniChem 'PubChem TPHARMA' 14993181
0A1 UniChem Mcule MCULE-9599742463
0A1 UniChem ACTor 3308-72-3
0A1 UniChem BRENDA 134609
0A1 UniChem BRENDA 239848
0A1 UniChem BRENDA 32548
0A1 UniChem ChemicalBook CB4232074
0A1 UniChem ChemicalBook CB4727682
0A1 UniChem Nikkaji J211.468B
0A1 UniChem SureChEMBL SCHEMBL126195
0A1 UniChem PubChem 2723935
0A1 UniChem PubChem 6950203
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0A1 N -2.877 -0.683 -0.893 ETKDGv3 1
0A1 CA -2.755 -0.159 0.469 ETKDGv3 2
0A1 CB -1.605 -0.854 1.227 ETKDGv3 3
0A1 CG -0.265 -0.688 0.550 ETKDGv3 4
0A1 CD1 0.552 0.328 0.878 ETKDGv3 5
0A1 CE1 1.849 0.497 0.191 ETKDGv3 6
0A1 CZ 2.225 -0.365 -0.775 ETKDGv3 7
0A1 OH 3.444 -0.251 -1.462 ETKDGv3 8
0A1 CM 4.414 0.766 -1.228 ETKDGv3 9
0A1 CE2 1.323 -1.480 -1.137 ETKDGv3 10
0A1 CD2 0.149 -1.635 -0.514 ETKDGv3 11
0A1 C -2.566 1.334 0.450 ETKDGv3 12
0A1 O -1.947 1.889 -0.498 ETKDGv3 13
0A1 OXT -3.036 2.100 1.512 ETKDGv3 14
0A1 H -3.089 -1.706 -0.834 ETKDGv3 15
0A1 H2 -3.713 -0.242 -1.341 ETKDGv3 16
0A1 HA -3.700 -0.374 1.018 ETKDGv3 17
0A1 HBC1 -1.834 -1.938 1.317 ETKDGv3 18
0A1 HBC2 -1.559 -0.461 2.268 ETKDGv3 19
0A1 HXT -2.902 3.104 1.527 ETKDGv3 20
0A1 HD1 0.268 1.039 1.644 ETKDGv3 21
0A1 HD2 -0.499 -2.458 -0.790 ETKDGv3 22
0A1 HE1 2.479 1.325 0.483 ETKDGv3 23
0A1 HE2 1.616 -2.177 -1.912 ETKDGv3 24
0A1 HMC1 3.975 1.766 -1.432 ETKDGv3 25
0A1 HMC2 5.274 0.610 -1.911 ETKDGv3 26
0A1 HMC3 4.778 0.714 -0.181 ETKDGv3 27
#