data_0BJ
#
_chem_comp.id 0BJ
_chem_comp.name "methyl 2-[2,6-bis(oxidanyl)phenyl]carbonyl-5-methyl-3-oxidanyl-benzoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H14 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-06-08
_chem_comp.pdbx_modified_date 2022-04-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 302.279
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0BJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7F14
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0BJ C14 C1 C 0 1 N N N N N N 19.741 -38.819 -15.747 0.605 0.370 1.040 C14 0BJ 1
0BJ C5 C2 C 0 1 N N N N N N 22.046 -37.887 -18.403 -0.993 -4.280 -0.200 C5 0BJ 2
0BJ C6 C3 C 0 1 Y N N N N N 21.401 -35.496 -15.456 -2.835 -0.392 -0.311 C6 0BJ 3
0BJ C11 C4 C 0 1 Y N N N N N 18.899 -36.624 -15.199 -1.375 1.811 0.571 C11 0BJ 4
0BJ C8 C5 C 0 1 Y N N N N N 20.324 -34.685 -15.112 -3.408 0.867 -0.297 C8 0BJ 5
0BJ C9 C6 C 0 1 N N N N N N 20.544 -33.187 -14.883 -4.830 1.047 -0.761 C9 0BJ 6
0BJ C10 C7 C 0 1 Y N N N N N 19.060 -35.254 -14.986 -2.687 1.961 0.140 C10 0BJ 7
0BJ C13 C8 C 0 1 Y N N N N N 19.973 -37.446 -15.541 -0.784 0.542 0.573 C13 0BJ 8
0BJ C1 C9 C 0 1 Y N N N N N 21.242 -36.868 -15.671 -1.524 -0.568 0.121 C1 0BJ 9
0BJ C15 C10 C 0 1 Y N N N N N 19.765 -39.736 -14.679 1.714 0.388 0.073 C15 0BJ 10
0BJ C16 C11 C 0 1 Y N N N N N 20.030 -39.462 -13.328 3.025 0.112 0.494 C16 0BJ 11
0BJ C18 C12 C 0 1 Y N N N N N 20.001 -40.468 -12.371 4.060 0.132 -0.426 C18 0BJ 12
0BJ C19 C13 C 0 1 Y N N N N N 19.708 -41.770 -12.741 3.808 0.424 -1.753 C19 0BJ 13
0BJ C2 C14 C 0 1 N N N N N N 22.372 -37.618 -16.017 -0.915 -1.915 0.117 C2 0BJ 14
0BJ C20 C15 C 0 1 Y N N N N N 19.447 -42.066 -14.070 2.521 0.698 -2.179 C20 0BJ 15
0BJ C21 C16 C 0 1 Y N N N N N 19.473 -41.055 -15.017 1.469 0.677 -1.279 C21 0BJ 16
0BJ O12 O1 O 0 1 N N N N N N 17.688 -37.244 -15.076 -0.671 2.889 0.998 O12 0BJ 17
0BJ O17 O2 O 0 1 N N N N N N 20.325 -38.189 -12.927 3.276 -0.174 1.796 O17 0BJ 18
0BJ O22 O3 O 0 1 N N N N N N 19.212 -41.311 -16.333 0.207 0.941 -1.700 O22 0BJ 19
0BJ O23 O4 O 0 1 N N N N N N 19.443 -39.222 -16.868 0.835 0.218 2.225 O23 0BJ 20
0BJ O3 O5 O 0 1 N N N N N N 23.459 -37.433 -15.438 0.254 -2.054 0.416 O3 0BJ 21
0BJ O4 O6 O 0 1 N N N N N N 22.186 -38.489 -17.071 -1.657 -2.988 -0.218 O4 0BJ 22
0BJ H1 H1 H 0 1 N N N N N N 21.904 -38.680 -19.151 -0.621 -4.483 0.804 H1 0BJ 23
0BJ H2 H2 H 0 1 N N N N N N 21.175 -37.215 -18.412 -1.701 -5.056 -0.489 H2 0BJ 24
0BJ H3 H3 H 0 1 N N N N N N 22.954 -37.314 -18.644 -0.159 -4.269 -0.902 H3 0BJ 25
0BJ H4 H4 H 0 1 N N N N N N 22.382 -35.056 -15.559 -3.407 -1.241 -0.655 H4 0BJ 26
0BJ H5 H5 H 0 1 N N N N N N 20.414 -32.647 -15.833 -5.506 0.927 0.085 H5 0BJ 27
0BJ H6 H6 H 0 1 N N N N N N 19.814 -32.817 -14.148 -4.951 2.044 -1.185 H6 0BJ 28
0BJ H7 H7 H 0 1 N N N N N N 21.563 -33.020 -14.503 -5.062 0.299 -1.520 H7 0BJ 29
0BJ H8 H8 H 0 1 N N N N N N 18.210 -34.640 -14.725 -3.145 2.939 0.147 H8 0BJ 30
0BJ H9 H9 H 0 1 N N N N N N 20.207 -40.235 -11.337 5.069 -0.080 -0.104 H9 0BJ 31
0BJ H10 H10 H 0 1 N N N N N N 19.683 -42.552 -11.997 4.622 0.438 -2.463 H10 0BJ 32
0BJ H11 H11 H 0 1 N N N N N N 19.224 -43.081 -14.366 2.335 0.924 -3.219 H11 0BJ 33
0BJ H12 H12 H 0 1 N N N N N N 17.026 -36.604 -14.843 -0.692 3.017 1.957 H12 0BJ 34
0BJ H13 H13 H 0 1 N N N N N N 20.476 -38.179 -11.989 3.220 -1.115 2.010 H13 0BJ 35
0BJ H14 H14 H 0 1 N N N N N N 19.253 -40.501 -16.828 -0.007 1.883 -1.737 H14 0BJ 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0BJ C5 O4 SING N N 1
0BJ O4 C2 SING N N 2
0BJ O23 C14 DOUB N N 3
0BJ O22 C21 SING N N 4
0BJ C2 C1 SING N N 5
0BJ C2 O3 DOUB N N 6
0BJ C14 C13 SING N N 7
0BJ C14 C15 SING N N 8
0BJ C1 C13 DOUB Y N 9
0BJ C1 C6 SING Y N 10
0BJ C13 C11 SING Y N 11
0BJ C6 C8 DOUB Y N 12
0BJ C11 O12 SING N N 13
0BJ C11 C10 DOUB Y N 14
0BJ C8 C10 SING Y N 15
0BJ C8 C9 SING N N 16
0BJ C21 C15 DOUB Y N 17
0BJ C21 C20 SING Y N 18
0BJ C15 C16 SING Y N 19
0BJ C20 C19 DOUB Y N 20
0BJ C16 O17 SING N N 21
0BJ C16 C18 DOUB Y N 22
0BJ C19 C18 SING Y N 23
0BJ C5 H1 SING N N 24
0BJ C5 H2 SING N N 25
0BJ C5 H3 SING N N 26
0BJ C6 H4 SING N N 27
0BJ C9 H5 SING N N 28
0BJ C9 H6 SING N N 29
0BJ C9 H7 SING N N 30
0BJ C10 H8 SING N N 31
0BJ C18 H9 SING N N 32
0BJ C19 H10 SING N N 33
0BJ C20 H11 SING N N 34
0BJ O12 H12 SING N N 35
0BJ O17 H13 SING N N 36
0BJ O22 H14 SING N N 37
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0BJ InChI InChI 1.03 InChI=1S/C16H14O6/c1-8-6-9(16(21)22-2)13(12(19)7-8)15(20)14-10(17)4-3-5-11(14)18/h3-7,17-19H,1-2H3
0BJ InChIKey InChI 1.03 HZZOIPFDIKYDFZ-UHFFFAOYSA-N
0BJ SMILES_CANONICAL CACTVS 3.385 COC(=O)c1cc(C)cc(O)c1C(=O)c2c(O)cccc2O
0BJ SMILES CACTVS 3.385 COC(=O)c1cc(C)cc(O)c1C(=O)c2c(O)cccc2O
0BJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1cc(c(c(c1)O)C(=O)c2c(cccc2O)O)C(=O)OC
0BJ SMILES "OpenEye OEToolkits" 2.0.7 Cc1cc(c(c(c1)O)C(=O)c2c(cccc2O)O)C(=O)OC
#
_pdbx_chem_comp_identifier.comp_id 0BJ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "methyl 2-[2,6-bis(oxidanyl)phenyl]carbonyl-5-methyl-3-oxidanyl-benzoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0BJ 'Create component' 2021-06-08 PDBJ
0BJ 'Initial release' 2022-04-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0BJ C14 C 8.196 0.886 1
0BJ C5 C 3.000 -0.614 2
0BJ C6 C 6.897 -2.864 3
0BJ C11 C 9.495 -1.364 4
0BJ C8 C 8.196 -3.614 5
0BJ C9 C 8.196 -5.114 6
0BJ C10 C 9.495 -2.864 7
0BJ C13 C 8.196 -0.614 8
0BJ C1 C 6.897 -1.364 9
0BJ C15 C 8.709 2.295 10
0BJ C16 C 10.186 2.556 11
0BJ C18 C 10.700 3.965 12
0BJ C19 C 9.735 5.114 13
0BJ C2 C 5.598 -0.614 14
0BJ C20 C 8.258 4.854 15
0BJ C21 C 7.745 3.444 16
0BJ O12 O 10.794 -0.614 17
0BJ O17 O 11.150 1.407 18
0BJ O22 O 6.268 3.184 19
0BJ O23 O 6.897 1.636 20
0BJ O3 O 5.598 0.886 21
0BJ O4 O 4.299 -1.364 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0BJ C5 O4 SINGLE NONE 1
0BJ O4 C2 SINGLE NONE 2
0BJ O23 C14 DOUBLE NONE 3
0BJ O22 C21 SINGLE NONE 4
0BJ C2 C1 SINGLE NONE 5
0BJ C2 O3 DOUBLE NONE 6
0BJ C14 C13 SINGLE NONE 7
0BJ C14 C15 SINGLE NONE 8
0BJ C1 C13 SINGLE NONE 9
0BJ C1 C6 DOUBLE NONE 10
0BJ C13 C11 DOUBLE NONE 11
0BJ C6 C8 SINGLE NONE 12
0BJ C11 O12 SINGLE NONE 13
0BJ C11 C10 SINGLE NONE 14
0BJ C8 C10 DOUBLE NONE 15
0BJ C8 C9 SINGLE NONE 16
0BJ C21 C15 SINGLE NONE 17
0BJ C21 C20 DOUBLE NONE 18
0BJ C15 C16 DOUBLE NONE 19
0BJ C20 C19 SINGLE NONE 20
0BJ C16 O17 SINGLE NONE 21
0BJ C16 C18 SINGLE NONE 22
0BJ C19 C18 DOUBLE NONE 23
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0BJ MurckoScaffold S1 scaffold O=C(c1ccccc1)c1ccccc1 InChI=1S/C13H10O/c14-13(11-7-3-1-4-8-11)12-9-5-2-6-10-12/h1-10H RWCCWEUUXYIKHB-UHFFFAOYSA-N
0BJ phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0BJ C14 S1 1
0BJ C6 S1 1
0BJ C11 S1 1
0BJ C8 S1 1
0BJ C10 S1 1
0BJ C13 S1 1
0BJ C1 S1 1
0BJ C15 S1 1
0BJ C16 S1 1
0BJ C18 S1 1
0BJ C19 S1 1
0BJ C20 S1 1
0BJ C21 S1 1
0BJ O23 S1 1
0BJ C6 F1 1
0BJ C1 F1 1
0BJ C13 F1 1
0BJ C11 F1 1
0BJ C10 F1 1
0BJ C8 F1 1
0BJ C15 F1 2
0BJ C21 F1 2
0BJ C20 F1 2
0BJ C19 F1 2
0BJ C18 F1 2
0BJ C16 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 0BJ
_pdbe_chem_comp_rdkit_properties.exactmw 302.079
_pdbe_chem_comp_rdkit_properties.amw 302.282
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 36
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 145.697
_pdbe_chem_comp_rdkit_properties.tpsa 104.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.523
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.493
_pdbe_chem_comp_rdkit_properties.chi0v 10.449
_pdbe_chem_comp_rdkit_properties.chi1v 5.429
_pdbe_chem_comp_rdkit_properties.chi2v 2.523
_pdbe_chem_comp_rdkit_properties.chi3v 2.523
_pdbe_chem_comp_rdkit_properties.chi4v 1.633
_pdbe_chem_comp_rdkit_properties.chi0n 24.449
_pdbe_chem_comp_rdkit_properties.chi1n 12.154
_pdbe_chem_comp_rdkit_properties.chi2n 2.523
_pdbe_chem_comp_rdkit_properties.chi3n 2.523
_pdbe_chem_comp_rdkit_properties.chi4n 1.633
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.020
_pdbe_chem_comp_rdkit_properties.kappa1 5.314
_pdbe_chem_comp_rdkit_properties.kappa2 5.768
_pdbe_chem_comp_rdkit_properties.kappa3 2.582
_pdbe_chem_comp_rdkit_properties.Phi 1.393
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0BJ UniChem PDBe 0BJ
0BJ UniChem ZINC ZINC000036375397
0BJ UniChem PubChem 23846558
0BJ UniChem NMRShiftDB 20221510
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0BJ C14 -0.620 0.606 1.306 ETKDGv3 1
0BJ C5 -0.582 -3.417 0.842 ETKDGv3 2
0BJ C6 2.647 -0.034 -0.532 ETKDGv3 3
0BJ C11 1.372 2.010 0.942 ETKDGv3 4
0BJ C8 3.308 1.277 -0.366 ETKDGv3 5
0BJ C9 4.677 1.502 -0.936 ETKDGv3 6
0BJ C10 2.713 2.228 0.366 ETKDGv3 7
0BJ C13 0.752 0.813 0.787 ETKDGv3 8
0BJ C1 1.446 -0.280 0.025 ETKDGv3 9
0BJ C15 -1.749 0.249 0.401 ETKDGv3 10
0BJ C16 -2.769 -0.529 0.837 ETKDGv3 11
0BJ C18 -3.868 -0.901 -0.083 ETKDGv3 12
0BJ C19 -3.860 -0.481 -1.350 ETKDGv3 13
0BJ C2 0.864 -1.639 -0.094 ETKDGv3 14
0BJ C20 -2.765 0.373 -1.837 ETKDGv3 15
0BJ C21 -1.766 0.734 -1.015 ETKDGv3 16
0BJ O12 0.775 3.087 1.604 ETKDGv3 17
0BJ O17 -2.791 -1.014 2.145 ETKDGv3 18
0BJ O22 -0.758 1.578 -1.483 ETKDGv3 19
0BJ O23 -0.819 0.721 2.546 ETKDGv3 20
0BJ O3 1.128 -2.352 -1.102 ETKDGv3 21
0BJ O4 0.046 -2.143 0.922 ETKDGv3 22
0BJ H1 -1.263 -3.449 -0.035 ETKDGv3 23
0BJ H2 -1.176 -3.588 1.763 ETKDGv3 24
0BJ H3 0.185 -4.215 0.753 ETKDGv3 25
0BJ H4 3.170 -0.812 -1.075 ETKDGv3 26
0BJ H5 4.789 2.551 -1.285 ETKDGv3 27
0BJ H6 4.854 0.832 -1.803 ETKDGv3 28
0BJ H7 5.441 1.294 -0.158 ETKDGv3 29
0BJ H8 3.201 3.183 0.522 ETKDGv3 30
0BJ H9 -4.678 -1.527 0.269 ETKDGv3 31
0BJ H10 -4.663 -0.761 -2.020 ETKDGv3 32
0BJ H11 -2.784 0.720 -2.862 ETKDGv3 33
0BJ H12 -0.169 3.070 1.967 ETKDGv3 34
0BJ H13 -3.542 -1.607 2.475 ETKDGv3 35
0BJ H14 -0.745 1.923 -2.436 ETKDGv3 36
#