data_0FN
#
_chem_comp.id 0FN
_chem_comp.name 1,3-dioxo-2,3-dihydro-1H-indene-2-carbonitrile
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H5 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-01-04
_chem_comp.pdbx_modified_date 2012-03-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 171.152
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0FN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VBW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0FN OAH OAH O 0 1 N N N N N N 23.171 33.573 3.393 -0.988 -2.369 0.468 OAH 0FN 1
0FN CAC CAC C 0 1 N N N N N N 22.725 33.947 2.288 -0.652 -1.206 0.398 CAC 0FN 2
0FN CAD CAD C 0 1 Y N N N N N 22.904 35.172 1.691 0.704 -0.704 0.115 CAD 0FN 3
0FN CAK CAK C 0 1 Y N N N N N 23.382 36.330 2.193 1.896 -1.390 -0.135 CAK 0FN 4
0FN CAL CAL C 0 1 Y N N N N N 23.493 37.462 1.367 3.060 -0.688 -0.379 CAL 0FN 5
0FN CAM CAM C 0 1 Y N N N N N 23.068 37.374 0.028 3.058 0.696 -0.378 CAM 0FN 6
0FN CAJ CAJ C 0 1 Y N N N N N 22.543 36.141 -0.434 1.891 1.393 -0.133 CAJ 0FN 7
0FN CAE CAE C 0 1 Y N N N N N 22.493 35.086 0.381 0.702 0.704 0.115 CAE 0FN 8
0FN CAB CAB C 0 1 N N N N N N 22.029 33.829 0.172 -0.656 1.202 0.400 CAB 0FN 9
0FN OAI OAI O 0 1 N N N N N N 21.614 33.357 -0.900 -0.995 2.363 0.472 OAI 0FN 10
0FN CAA CAA C 0 1 N N N N N N 21.846 33.234 1.462 -1.548 -0.004 0.579 CAA 0FN 11
0FN CAF CAF C 0 1 N N N N N N 21.741 31.736 1.512 -2.618 0.000 -0.433 CAF 0FN 12
0FN NAG NAG N 0 1 N N N N N N 21.552 30.540 1.547 -3.443 0.004 -1.213 NAG 0FN 13
0FN H1 H1 H 0 1 N N N N N N 23.679 36.387 3.230 1.906 -2.469 -0.137 H1 0FN 14
0FN H2 H2 H 0 1 N N N N N N 23.898 38.385 1.754 3.979 -1.223 -0.571 H2 0FN 15
0FN H3 H3 H 0 1 N N N N N N 23.140 38.226 -0.632 3.975 1.234 -0.569 H3 0FN 16
0FN H4 H4 H 0 1 N N N N N N 22.183 36.055 -1.448 1.898 2.473 -0.133 H4 0FN 17
0FN H5 H5 H 0 1 N N N N N N 20.846 33.570 1.772 -1.978 -0.009 1.580 H5 0FN 18
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0FN OAI CAB DOUB N N 1
0FN CAJ CAM DOUB Y N 2
0FN CAJ CAE SING Y N 3
0FN CAM CAL SING Y N 4
0FN CAB CAE SING N N 5
0FN CAB CAA SING N N 6
0FN CAE CAD DOUB Y N 7
0FN CAL CAK DOUB Y N 8
0FN CAA CAF SING N N 9
0FN CAA CAC SING N N 10
0FN CAF NAG TRIP N N 11
0FN CAD CAK SING Y N 12
0FN CAD CAC SING N N 13
0FN CAC OAH DOUB N N 14
0FN CAK H1 SING N N 15
0FN CAL H2 SING N N 16
0FN CAM H3 SING N N 17
0FN CAJ H4 SING N N 18
0FN CAA H5 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0FN SMILES ACDLabs 12.01 "O=C2c1ccccc1C(=O)C2C#N"
0FN InChI InChI 1.03 InChI=1S/C10H5NO2/c11-5-8-9(12)6-3-1-2-4-7(6)10(8)13/h1-4,8H
0FN InChIKey InChI 1.03 GKEKUQYTCADDSQ-UHFFFAOYSA-N
0FN SMILES_CANONICAL CACTVS 3.370 "O=C1C(C#N)C(=O)c2ccccc12"
0FN SMILES CACTVS 3.370 "O=C1C(C#N)C(=O)c2ccccc12"
0FN SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)C(=O)C(C2=O)C#N"
0FN SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)C(=O)C(C2=O)C#N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0FN "SYSTEMATIC NAME" ACDLabs 12.01 1,3-dioxo-2,3-dihydro-1H-indene-2-carbonitrile
0FN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 1,3-bis(oxidanylidene)indene-2-carbonitrile
#
_pdbx_chem_comp_audit.comp_id 0FN
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2012-01-04
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0FN OAH O 7.483 -2.633 1
0FN CAC C 7.018 -1.207 2
0FN CAD C 5.598 -0.750 3
0FN CAK C 4.299 -1.500 4
0FN CAL C 3.000 -0.750 5
0FN CAM C 3.000 0.750 6
0FN CAJ C 4.299 1.500 7
0FN CAE C 5.598 0.750 8
0FN CAB C 7.018 1.207 9
0FN OAI O 7.483 2.633 10
0FN CAA C 7.893 0.000 11
0FN CAF C 9.393 0.000 12
0FN NAG N 10.893 0.000 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0FN OAI CAB DOUBLE NONE 1
0FN CAJ CAM SINGLE NONE 2
0FN CAJ CAE DOUBLE NONE 3
0FN CAM CAL DOUBLE NONE 4
0FN CAB CAE SINGLE NONE 5
0FN CAB CAA SINGLE NONE 6
0FN CAE CAD SINGLE NONE 7
0FN CAL CAK SINGLE NONE 8
0FN CAA CAF SINGLE NONE 9
0FN CAA CAC SINGLE NONE 10
0FN CAF NAG TRIPLE NONE 11
0FN CAD CAK DOUBLE NONE 12
0FN CAD CAC SINGLE NONE 13
0FN CAC OAH DOUBLE NONE 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0FN MurckoScaffold S1 scaffold O=C1CC(=O)c2ccccc21 InChI=1S/C9H6O2/c10-8-5-9(11)7-4-2-1-3-6(7)8/h1-4H,5H2 UHKAJLSKXBADFT-UHFFFAOYSA-N
0FN phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0FN OAH S1 1
0FN CAC S1 1
0FN CAD S1 1
0FN CAK S1 1
0FN CAL S1 1
0FN CAM S1 1
0FN CAJ S1 1
0FN CAE S1 1
0FN CAB S1 1
0FN OAI S1 1
0FN CAA S1 1
0FN CAD F1 1
0FN CAE F1 1
0FN CAJ F1 1
0FN CAM F1 1
0FN CAL F1 1
0FN CAK F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0FN
_pdbe_chem_comp_rdkit_properties.exactmw 171.032
_pdbe_chem_comp_rdkit_properties.amw 171.155
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 18
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.100
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 81.626
_pdbe_chem_comp_rdkit_properties.tpsa 57.930
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.096
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.674
_pdbe_chem_comp_rdkit_properties.chi0v 6.264
_pdbe_chem_comp_rdkit_properties.chi1v 3.382
_pdbe_chem_comp_rdkit_properties.chi2v 1.708
_pdbe_chem_comp_rdkit_properties.chi3v 1.708
_pdbe_chem_comp_rdkit_properties.chi4v 1.108
_pdbe_chem_comp_rdkit_properties.chi0n 11.264
_pdbe_chem_comp_rdkit_properties.chi1n 5.882
_pdbe_chem_comp_rdkit_properties.chi2n 1.708
_pdbe_chem_comp_rdkit_properties.chi3n 1.708
_pdbe_chem_comp_rdkit_properties.chi4n 1.108
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.950
_pdbe_chem_comp_rdkit_properties.kappa1 3.839
_pdbe_chem_comp_rdkit_properties.kappa2 2.526
_pdbe_chem_comp_rdkit_properties.kappa3 0.890
_pdbe_chem_comp_rdkit_properties.Phi 0.746
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0FN UniChem ChEMBL CHEMBL2032370
0FN UniChem PDBe 0FN
0FN UniChem ZINC ZINC000100102142
0FN UniChem ACTor 42382-92-3
0FN UniChem BindingDb 50383267
0FN UniChem Nikkaji J3.427.301D
0FN UniChem eMolecules 7481744
0FN UniChem PubChem 294520
0FN UniChem Mcule MCULE-7044306474
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0FN OAH -0.291 2.723 0.882 ETKDGv3 1
0FN CAC -0.550 1.550 0.502 ETKDGv3 2
0FN CAD 0.444 0.499 0.333 ETKDGv3 3
0FN CAK 1.769 0.530 0.507 ETKDGv3 4
0FN CAL 2.531 -0.723 0.258 ETKDGv3 5
0FN CAM 1.890 -1.846 -0.130 ETKDGv3 6
0FN CAJ 0.414 -1.843 -0.312 ETKDGv3 7
0FN CAE -0.241 -0.702 -0.082 ETKDGv3 8
0FN CAB -1.663 -0.400 -0.171 ETKDGv3 9
0FN OAI -2.552 -1.237 -0.485 ETKDGv3 10
0FN CAA -1.931 1.039 0.183 ETKDGv3 11
0FN CAF -2.498 1.759 -0.963 ETKDGv3 12
0FN NAG -2.946 2.326 -1.867 ETKDGv3 13
0FN H1 2.273 1.435 0.820 ETKDGv3 14
0FN H2 3.606 -0.731 0.389 ETKDGv3 15
0FN H3 2.450 -2.754 -0.310 ETKDGv3 16
0FN H4 -0.110 -2.739 -0.621 ETKDGv3 17
0FN H5 -2.597 1.114 1.069 ETKDGv3 18
#