data_0FU
#
_chem_comp.id 0FU
_chem_comp.name 2,5,6-triaminopyrimidin-4-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H7 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 4-hydroxy-2,5,6-triaminopyrimidine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-01-04
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 141.131
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0FU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3V0R
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0FU C4 C4 C 0 1 Y N N N N N 34.767 -0.664 18.316 0.361 1.184 0.021 C4 0FU 1
0FU N3 N3 N 0 1 Y N N N N N 34.656 -0.843 16.973 -0.968 1.153 0.015 N3 0FU 2
0FU C2 C2 C 0 1 Y N N N N N 34.961 0.142 16.084 -1.621 0.001 0.002 C2 0FU 3
0FU NAA NAA N 0 1 N N N N N N 34.830 -0.100 14.771 -3.007 0.012 -0.004 NAA 0FU 4
0FU N1 N1 N 0 1 Y N N N N N 35.396 1.353 16.495 -0.986 -1.161 -0.007 N1 0FU 5
0FU C6 C6 C 0 1 Y N N N N N 35.524 1.588 17.833 0.344 -1.211 -0.003 C6 0FU 6
0FU NAB NAB N 0 1 N N N N N N 35.944 2.760 18.249 1.003 -2.433 -0.012 NAB 0FU 7
0FU C5 C5 C 0 1 Y N N N N N 35.212 0.582 18.791 1.067 -0.016 0.012 C5 0FU 8
0FU NAC NAC N 0 1 N N N N N N 35.331 0.769 20.131 2.475 -0.025 0.011 NAC 0FU 9
0FU O4 O4 O 0 1 N N N N N N 34.430 -1.742 19.193 1.021 2.370 0.029 O4 0FU 10
0FU H1 H1 H 0 1 N N N N N N 35.094 0.714 14.254 -3.499 -0.825 -0.015 H1 0FU 11
0FU H2 H2 H 0 1 N N N N N N 35.420 -0.865 14.513 -3.486 0.855 0.002 H2 0FU 12
0FU H3 H3 H 0 1 N N N N N N 36.121 3.350 17.461 0.494 -3.259 -0.022 H3 0FU 13
0FU H4 H4 H 0 1 N N N N N N 35.244 3.178 18.828 1.973 -2.462 -0.008 H4 0FU 14
0FU H7 H7 H 0 1 N N N N N N 35.655 1.698 20.311 2.965 0.812 0.016 H7 0FU 15
0FU H8 H8 H 0 1 N N N N N N 34.440 0.637 20.566 2.954 -0.868 0.004 H8 0FU 16
0FU H71 H71 H 0 1 N N N N N N 34.154 -2.493 18.681 1.212 2.720 -0.851 H71 0FU 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0FU C4 C5 DOUB Y N 1
0FU N3 C4 SING Y N 2
0FU C2 N1 SING Y N 3
0FU C2 N3 DOUB Y N 4
0FU NAA C2 SING N N 5
0FU N1 C6 DOUB Y N 6
0FU C6 NAB SING N N 7
0FU C6 C5 SING Y N 8
0FU C5 NAC SING N N 9
0FU C4 O4 SING N N 10
0FU NAA H1 SING N N 11
0FU NAA H2 SING N N 12
0FU NAB H3 SING N N 13
0FU NAB H4 SING N N 14
0FU NAC H7 SING N N 15
0FU NAC H8 SING N N 16
0FU O4 H71 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0FU SMILES ACDLabs 12.01 n1c(N)c(N)c(O)nc1N
0FU InChI InChI 1.03 InChI=1S/C4H7N5O/c5-1-2(6)8-4(7)9-3(1)10/h5H2,(H5,6,7,8,9,10)
0FU InChIKey InChI 1.03 SYEYEGBZVSWYPK-UHFFFAOYSA-N
0FU SMILES_CANONICAL CACTVS 3.370 Nc1nc(N)c(N)c(O)n1
0FU SMILES CACTVS 3.370 Nc1nc(N)c(N)c(O)n1
0FU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1(c(nc(nc1O)N)N)N
0FU SMILES "OpenEye OEToolkits" 1.7.6 c1(c(nc(nc1O)N)N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0FU "SYSTEMATIC NAME" ACDLabs 12.01 2,5,6-triaminopyrimidin-4-ol
0FU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2,5,6-tris(azanyl)pyrimidin-4-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0FU 'Create component' 2012-01-04 RCSB
0FU 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0FU
_pdbx_chem_comp_synonyms.name 4-hydroxy-2,5,6-triaminopyrimidine
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 0FU
_pdbe_chem_comp_synonyms.name 4-hydroxy-2,5,6-triaminopyrimidine
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0FU C4 C 5.104 -1.035 1
0FU N3 N 6.404 -1.785 2
0FU C2 C 7.702 -1.035 3
0FU NAA N 9.002 -1.785 4
0FU N1 N 7.702 0.465 5
0FU C6 C 6.404 1.215 6
0FU NAB N 6.404 2.715 7
0FU C5 C 5.104 0.465 8
0FU NAC N 3.805 1.215 9
0FU O4 O 3.805 -1.785 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0FU C4 C5 DOUBLE NONE 1
0FU N3 C4 SINGLE NONE 2
0FU C2 N1 SINGLE NONE 3
0FU C2 N3 DOUBLE NONE 4
0FU NAA C2 SINGLE NONE 5
0FU N1 C6 DOUBLE NONE 6
0FU C6 NAB SINGLE NONE 7
0FU C6 C5 SINGLE NONE 8
0FU C5 NAC SINGLE NONE 9
0FU C4 O4 SINGLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0FU MurckoScaffold S1 scaffold c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
0FU pyrimidine F1 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0FU C4 S1 1
0FU N3 S1 1
0FU C2 S1 1
0FU N1 S1 1
0FU C6 S1 1
0FU C5 S1 1
0FU C5 F1 1
0FU C4 F1 1
0FU N3 F1 1
0FU C2 F1 1
0FU N1 F1 1
0FU C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0FU
_pdbe_chem_comp_rdkit_properties.exactmw 141.065
_pdbe_chem_comp_rdkit_properties.amw 141.134
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 17
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 66.954
_pdbe_chem_comp_rdkit_properties.tpsa 124.070
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.675
_pdbe_chem_comp_rdkit_properties.CrippenMR 33.852
_pdbe_chem_comp_rdkit_properties.chi0v 4.644
_pdbe_chem_comp_rdkit_properties.chi1v 2.269
_pdbe_chem_comp_rdkit_properties.chi2v 0.822
_pdbe_chem_comp_rdkit_properties.chi3v 0.822
_pdbe_chem_comp_rdkit_properties.chi4v 0.412
_pdbe_chem_comp_rdkit_properties.chi0n 11.644
_pdbe_chem_comp_rdkit_properties.chi1n 5.361
_pdbe_chem_comp_rdkit_properties.chi2n 0.822
_pdbe_chem_comp_rdkit_properties.chi3n 0.822
_pdbe_chem_comp_rdkit_properties.chi4n 0.412
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.720
_pdbe_chem_comp_rdkit_properties.kappa1 1.880
_pdbe_chem_comp_rdkit_properties.kappa2 1.904
_pdbe_chem_comp_rdkit_properties.kappa3 0.859
_pdbe_chem_comp_rdkit_properties.Phi 0.358
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0FU UniChem ChEMBL CHEMBL2151965
0FU UniChem PDBe 0FU
0FU UniChem ChEBI 137796
0FU UniChem ZINC ZINC000018213438
0FU UniChem fdasrs FR001FJW89
0FU UniChem SureChEMBL SCHEMBL33967
0FU UniChem 'PubChem TPHARMA' 14842969
0FU UniChem 'PubChem TPHARMA' 15898378
0FU UniChem PubChem 135406869
0FU UniChem ACTor 1004-75-7
0FU UniChem Nikkaji J27.918H
0FU UniChem 'EPA CompTox Dashboard' DTXSID3061396
0FU UniChem Rhea 137796
0FU UniChem ChemicalBook CB6240527
0FU UniChem eMolecules 979539
0FU UniChem 'PubChem TPHARMA' 14940588
0FU UniChem Mcule MCULE-6489171241
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0FU C4 0.001 1.163 -0.733 ETKDGv3 1
0FU N3 1.301 1.123 -0.122 ETKDGv3 2
0FU C2 1.649 0.143 0.657 ETKDGv3 3
0FU NAA 2.944 0.130 1.253 ETKDGv3 4
0FU N1 0.731 -0.929 0.911 ETKDGv3 5
0FU C6 -0.458 -0.950 0.383 ETKDGv3 6
0FU NAB -1.310 -2.067 0.655 ETKDGv3 7
0FU C5 -0.884 0.175 -0.504 ETKDGv3 8
0FU NAC -2.196 0.228 -1.084 ETKDGv3 9
0FU O4 -0.331 2.239 -1.553 ETKDGv3 10
0FU H1 3.620 0.904 1.072 ETKDGv3 11
0FU H2 3.227 -0.658 1.877 ETKDGv3 12
0FU H3 -2.227 -2.206 0.182 ETKDGv3 13
0FU H4 -0.991 -2.813 1.312 ETKDGv3 14
0FU H7 -2.463 0.985 -1.752 ETKDGv3 15
0FU H8 -2.944 -0.451 -0.831 ETKDGv3 16
0FU H71 0.333 2.984 -1.723 ETKDGv3 17
#