data_0G6
#
_chem_comp.id 0G6
_chem_comp.name D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H34 Cl N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms PPACK
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2008-09-14
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 453.986
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0G6
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FXY
_chem_comp.pdbx_subcomponent_list "DPN PRO AR7 0QE"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0G6 N N N 0 1 N N N N N N 20.518 11.878 12.614 3.674 -1.120 -1.915 N DPN 1
0G6 CA CA C 0 1 N N R N N N 21.054 11.229 13.842 3.547 -0.662 -0.525 CA DPN 2
0G6 C C C 0 1 N N N N N N 20.069 10.210 14.390 2.099 -0.706 -0.111 C DPN 3
0G6 O O O 0 1 N N N N N N 19.548 9.376 13.649 1.314 -1.398 -0.725 O DPN 4
0G6 CB CB C 0 1 N N N N N N 22.373 10.521 13.531 4.366 -1.576 0.390 CB DPN 5
0G6 CG CG C 0 1 Y N N N N N 23.535 11.449 13.361 5.830 -1.438 0.056 CG DPN 6
0G6 CD1 CD1 C 0 1 Y N N N N N 23.903 12.316 14.382 6.599 -0.488 0.701 CD1 DPN 7
0G6 CD2 CD2 C 0 1 Y N N N N N 24.270 11.452 12.179 6.403 -2.266 -0.890 CD2 DPN 8
0G6 CE1 CE1 C 0 1 Y N N N N N 24.987 13.172 14.229 7.941 -0.362 0.396 CE1 DPN 9
0G6 CE2 CE2 C 0 1 Y N N N N N 25.356 12.304 12.016 7.746 -2.140 -1.196 CE2 DPN 10
0G6 CZ CZ C 0 1 Y N N N N N 25.714 13.165 13.043 8.514 -1.186 -0.555 CZ DPN 11
0G6 N1 N1 N 0 1 N N N N N N 19.778 10.281 15.696 1.676 0.023 0.941 N PRO 12
0G6 CA1 CA1 C 0 1 N N S N N N 18.847 9.328 16.304 0.297 0.073 1.449 CA PRO 13
0G6 C1 C1 C 0 1 N N N N N N 17.414 9.453 15.787 -0.630 0.567 0.369 C PRO 14
0G6 O1 O1 O 0 1 N N N N N N 16.916 10.551 15.528 -0.190 0.852 -0.725 O PRO 15
0G6 CB1 CB1 C 0 1 N N N N N N 18.948 9.632 17.798 0.284 1.054 2.641 CB PRO 16
0G6 CG1 CG1 C 0 1 N N N N N N 19.328 11.074 17.849 1.536 1.933 2.381 CG PRO 17
0G6 CD CD C 0 1 N N N N N N 20.254 11.279 16.671 2.520 0.897 1.775 CD PRO 18
0G6 N2 N2 N 0 1 N N N N N N 16.752 8.307 15.661 -1.949 0.692 0.618 N AR7 19
0G6 CA2 CA2 C 0 1 N N S N N N 15.380 8.254 15.186 -2.851 1.171 -0.432 CA AR7 20
0G6 C2 C2 C 0 1 N N S N N N 14.428 7.868 16.387 -2.857 2.701 -0.440 C AR7 21
0G6 O2 O2 O 0 1 N N N N N N 13.100 8.197 15.985 -3.736 3.170 -1.464 O AR7 22
0G6 CB2 CB2 C 0 1 N N N N N N 15.288 7.248 14.038 -4.266 0.657 -0.163 CB AR7 23
0G6 CG2 CG2 C 0 1 N N N N N N 16.004 7.709 12.786 -4.286 -0.868 -0.279 CG AR7 24
0G6 CD3 CD3 C 0 1 N N N N N N 16.131 6.600 11.759 -5.701 -1.382 -0.010 CD AR7 25
0G6 NE NE N 0 1 N N N N N N 16.808 7.063 10.547 -5.720 -2.843 -0.121 NE AR7 26
0G6 CZ1 CZ1 C 0 1 N N N N N N 17.047 6.303 9.480 -6.885 -3.530 0.080 CZ AR7 27
0G6 NH1 NH1 N 0 1 N N N N N N 16.667 5.031 9.456 -8.004 -2.870 0.376 NH1 AR7 28
0G6 NH2 NH2 N 1 1 N N N N N N 17.675 6.818 8.433 -6.902 -4.858 -0.021 NH2 AR7 29
0G6 C3 C3 C 0 1 N N N N N N 14.725 8.566 17.783 -1.441 3.216 -0.709 C1 0QE 30
0G6 CL CL CL 0 0 N Y N N N N 15.741 7.944 18.694 -1.418 5.013 -0.572 CL 0QE 31
0G6 H H H 0 1 N N N N N N 21.181 12.543 12.271 4.626 -1.039 -2.237 H DPN 32
0G6 H2 H2 H 0 1 N N N N N N 20.352 11.183 11.915 3.337 -2.066 -2.016 H2 DPN 33
0G6 HA HA H 0 1 N N N N N N 21.236 11.996 14.609 3.917 0.360 -0.443 HA DPN 34
0G6 HB2 HB2 H 0 1 N N N N N N 22.599 9.831 14.358 4.202 -1.291 1.429 HB2 DPN 35
0G6 HB3 HB3 H 0 1 N N N N N N 22.248 9.949 12.600 4.056 -2.610 0.243 HB3 DPN 36
0G6 HD1 HD1 H 0 1 N N N N N N 23.341 12.325 15.304 6.152 0.156 1.444 HD1 DPN 37
0G6 HD2 HD2 H 0 1 N N N N N N 23.993 10.783 11.378 5.803 -3.011 -1.391 HD2 DPN 38
0G6 HE1 HE1 H 0 1 N N N N N N 25.265 13.842 15.030 8.542 0.380 0.899 HE1 DPN 39
0G6 HE2 HE2 H 0 1 N N N N N N 25.918 12.296 11.094 8.194 -2.787 -1.936 HE2 DPN 40
0G6 HZ HZ H 0 1 N N N N N N 26.557 13.830 12.922 9.563 -1.088 -0.794 HZ DPN 41
0G6 HA1 HA1 H 0 1 N N N N N N 19.200 8.301 16.126 -0.013 -0.918 1.779 HA PRO 42
0G6 HB21 HB21 H 0 0 N N N N N N 17.982 9.464 18.297 -0.622 1.661 2.631 HB2 PRO 43
0G6 HB31 HB31 H 0 0 N N N N N N 19.719 9.008 18.273 0.379 0.516 3.584 HB3 PRO 44
0G6 HG2 HG2 H 0 1 N N N N N N 18.437 11.712 17.755 1.314 2.729 1.671 HG2 PRO 45
0G6 HG3 HG3 H 0 1 N N N N N N 19.846 11.304 18.792 1.927 2.341 3.313 HG3 PRO 46
0G6 HD21 HD21 H 0 0 N N N N N N 21.300 11.088 16.953 3.000 0.320 2.564 HD2 PRO 47
0G6 HD3 HD3 H 0 1 N N N N N N 20.162 12.299 16.269 3.268 1.400 1.162 HD3 PRO 48
0G6 H1 H1 H 0 1 N N N N N N 17.214 7.453 15.901 -2.301 0.464 1.493 H AR7 49
0G6 HA2 HA2 H 0 1 N N N N N N 15.077 9.244 14.814 -2.509 0.805 -1.400 HA AR7 50
0G6 HB22 HB22 H 0 0 N N N N N N 15.735 6.299 14.368 -4.574 0.949 0.841 HB2 AR7 51
0G6 HB32 HB32 H 0 0 N N N N N N 14.227 7.089 13.796 -4.953 1.086 -0.893 HB3 AR7 52
0G6 HG21 HG21 H 0 0 N N N N N N 15.439 8.541 12.341 -3.978 -1.160 -1.283 HG2 AR7 53
0G6 HG31 HG31 H 0 0 N N N N N N 17.011 8.055 13.061 -3.599 -1.297 0.451 HG3 AR7 54
0G6 HD22 HD22 H 0 0 N N N N N N 16.709 5.773 12.197 -6.009 -1.090 0.994 HD2 AR7 55
0G6 HD31 HD31 H 0 0 N N N N N N 15.125 6.244 11.492 -6.388 -0.954 -0.740 HD3 AR7 56
0G6 HE HE H 0 1 N N N N N N 17.112 8.015 10.518 -4.905 -3.323 -0.337 HE AR7 57
0G6 HH11 HH11 H 0 0 N N N N N N 16.855 4.468 8.651 -7.992 -1.903 0.450 HH11 AR7 58
0G6 HH12 HH12 H 0 0 N N N N N N 16.193 4.636 10.243 -8.831 -3.357 0.519 HH12 AR7 59
0G6 HH21 HH21 H 0 0 N N N N N N 17.860 6.249 7.631 -6.088 -5.338 -0.237 HH21 AR7 60
0G6 HH22 HH22 H 0 0 N N N N N N 17.964 7.775 8.444 -7.729 -5.345 0.121 HH22 AR7 61
0G6 H11 H11 H 0 1 N N N N N N 15.066 9.590 17.568 -0.754 2.787 0.021 H 0QE 62
0G6 H21 H21 H 0 1 N N N N N N 13.774 8.604 18.335 -1.133 2.924 -1.713 HA 0QE 63
0G6 H33 H33 H 0 1 N N N N N N 14.508 6.781 16.538 -3.198 3.068 0.528 H33 AR7 64
0G6 H34 H34 H 0 1 N N N N N N 12.494 7.979 16.683 -4.653 2.881 -1.357 H34 AR7 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0G6 N CA SING N N 1
0G6 N H SING N N 2
0G6 N H2 SING N N 3
0G6 CA C SING N N 4
0G6 CA CB SING N N 5
0G6 CA HA SING N N 6
0G6 C O DOUB N N 7
0G6 C N1 SING N N 8
0G6 CB CG SING N N 9
0G6 CB HB2 SING N N 10
0G6 CB HB3 SING N N 11
0G6 CG CD1 DOUB Y N 12
0G6 CG CD2 SING Y N 13
0G6 CD1 CE1 SING Y N 14
0G6 CD1 HD1 SING N N 15
0G6 CD2 CE2 DOUB Y N 16
0G6 CD2 HD2 SING N N 17
0G6 CE1 CZ DOUB Y N 18
0G6 CE1 HE1 SING N N 19
0G6 CE2 CZ SING Y N 20
0G6 CE2 HE2 SING N N 21
0G6 CZ HZ SING N N 22
0G6 N1 CA1 SING N N 23
0G6 N1 CD SING N N 24
0G6 CA1 C1 SING N N 25
0G6 CA1 CB1 SING N N 26
0G6 CA1 HA1 SING N N 27
0G6 C1 O1 DOUB N N 28
0G6 C1 N2 SING N N 29
0G6 CB1 CG1 SING N N 30
0G6 CB1 HB21 SING N N 31
0G6 CB1 HB31 SING N N 32
0G6 CG1 CD SING N N 33
0G6 CG1 HG2 SING N N 34
0G6 CG1 HG3 SING N N 35
0G6 CD HD21 SING N N 36
0G6 CD HD3 SING N N 37
0G6 N2 CA2 SING N N 38
0G6 N2 H1 SING N N 39
0G6 CA2 C2 SING N N 40
0G6 CA2 CB2 SING N N 41
0G6 CA2 HA2 SING N N 42
0G6 C2 O2 SING N N 43
0G6 C2 C3 SING N N 44
0G6 CB2 CG2 SING N N 45
0G6 CB2 HB22 SING N N 46
0G6 CB2 HB32 SING N N 47
0G6 CG2 CD3 SING N N 48
0G6 CG2 HG21 SING N N 49
0G6 CG2 HG31 SING N N 50
0G6 CD3 NE SING N N 51
0G6 CD3 HD22 SING N N 52
0G6 CD3 HD31 SING N N 53
0G6 NE CZ1 SING N N 54
0G6 NE HE SING N N 55
0G6 CZ1 NH1 SING N N 56
0G6 CZ1 NH2 DOUB N N 57
0G6 NH1 HH11 SING N N 58
0G6 NH1 HH12 SING N N 59
0G6 NH2 HH21 SING N N 60
0G6 NH2 HH22 SING N N 61
0G6 C3 H11 SING N N 62
0G6 C3 H21 SING N N 63
0G6 CL C3 SING N N 64
0G6 C2 H33 SING N N 65
0G6 O2 H34 SING N N 66
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0G6 SMILES ACDLabs 12.01 O=C(NC(CCCNC(=[NH2+])\N)C(O)CCl)C2N(C(=O)C(N)Cc1ccccc1)CCC2
0G6 InChI InChI 1.03 InChI=1S/C21H33ClN6O3/c22-13-18(29)16(8-4-10-26-21(24)25)27-19(30)17-9-5-11-28(17)20(31)15(23)12-14-6-2-1-3-7-14/h1-3,6-7,15-18,29H,4-5,8-13,23H2,(H,27,30)(H4,24,25,26)/p+1/t15-,16+,17+,18-/m1/s1
0G6 InChIKey InChI 1.03 DVFLYEYCMMLBTQ-VSZNYVQBSA-O
0G6 SMILES_CANONICAL CACTVS 3.370 N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(N)=[NH2+])[C@H](O)CCl
0G6 SMILES CACTVS 3.370 N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)N[CH](CCCNC(N)=[NH2+])[CH](O)CCl
0G6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)N[C@@H](CCCNC(=[NH2+])N)[C@@H](CCl)O)N
0G6 SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NC(CCCNC(=[NH2+])N)C(CCl)O)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0G6 "SYSTEMATIC NAME" ACDLabs 12.01 D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide
0G6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[azanyl-[[(4S,5S)-4-[[(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]pyrrolidin-2-yl]carbonylamino]-6-chloranyl-5-oxidanyl-hexyl]amino]methylidene]azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0G6 'Create component' 2008-09-14 RCSB
0G6 'Other modification' 2010-10-10 RCSB
0G6 'Modify synonyms' 2011-02-04 RCSB
0G6 'Modify descriptor' 2011-06-04 RCSB
0G6 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0G6
_pdbx_chem_comp_synonyms.name PPACK
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 0G6
_pdbe_chem_comp_drugbank_details.drugbank_id DB06841
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'[(2R)-1-[(2S)-2-[[(2S,3S)-1-Chloro-6-(diaminomethylideneamino)-2-hydroxyhexan-3-yl]carbamoyl]pyrrolidin-1-yl]-1-oxo-3-phenylpropan-2-yl]azanium'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id 0G6
_pdbe_chem_comp_synonyms.name PPACK
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_targets.comp_id 0G6
_pdbe_chem_comp_drugbank_targets.drugbank_id DB06841
_pdbe_chem_comp_drugbank_targets.name Prothrombin
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P00734
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0G6 N N 6.897 -3.432 1
0G6 CA C 5.598 -2.682 2
0G6 C C 5.598 -1.182 3
0G6 O O 4.299 -0.432 4
0G6 CB C 4.299 -3.432 5
0G6 CG C 4.299 -4.932 6
0G6 CD1 C 5.598 -5.682 7
0G6 CD2 C 3.000 -5.682 8
0G6 CE1 C 5.598 -7.182 9
0G6 CE2 C 3.000 -7.182 10
0G6 CZ C 4.299 -7.932 11
0G6 N1 N 6.897 -0.432 12
0G6 CA1 C 7.054 1.060 13
0G6 C1 C 5.939 2.063 14
0G6 O1 O 4.513 1.600 15
0G6 CB1 C 8.521 1.371 16
0G6 CG1 C 9.271 0.072 17
0G6 CD C 8.267 -1.042 18
0G6 N2 N 6.251 3.530 19
0G6 CA2 C 7.678 3.994 20
0G6 C2 C 7.989 5.461 21
0G6 O2 O 9.416 5.925 22
0G6 CB2 C 8.792 2.990 23
0G6 CG2 C 10.219 3.454 24
0G6 CD3 C 11.334 2.450 25
0G6 NE N 12.760 2.914 26
0G6 CZ1 C 13.875 1.910 27
0G6 NH1 N 15.302 2.374 28
0G6 NH2 N 13.563 0.443 29
0G6 C3 C 6.875 6.465 30
0G6 CL Cl 7.187 7.932 31
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0G6 CA N SINGLE BEGINDASH 1
0G6 CA C SINGLE NONE 2
0G6 CA CB SINGLE NONE 3
0G6 C O DOUBLE NONE 4
0G6 C N1 SINGLE NONE 5
0G6 CB CG SINGLE NONE 6
0G6 CG CD1 DOUBLE NONE 7
0G6 CG CD2 SINGLE NONE 8
0G6 CD1 CE1 SINGLE NONE 9
0G6 CD2 CE2 DOUBLE NONE 10
0G6 CE1 CZ DOUBLE NONE 11
0G6 CE2 CZ SINGLE NONE 12
0G6 N1 CA1 SINGLE NONE 13
0G6 N1 CD SINGLE NONE 14
0G6 CA1 C1 SINGLE BEGINDASH 15
0G6 CA1 CB1 SINGLE NONE 16
0G6 C1 O1 DOUBLE NONE 17
0G6 C1 N2 SINGLE NONE 18
0G6 CB1 CG1 SINGLE NONE 19
0G6 CG1 CD SINGLE NONE 20
0G6 N2 CA2 SINGLE NONE 21
0G6 CA2 C2 SINGLE NONE 22
0G6 CA2 CB2 SINGLE BEGINDASH 23
0G6 C2 O2 SINGLE BEGINWEDGE 24
0G6 C2 C3 SINGLE NONE 25
0G6 CB2 CG2 SINGLE NONE 26
0G6 CG2 CD3 SINGLE NONE 27
0G6 CD3 NE SINGLE NONE 28
0G6 NE CZ1 SINGLE NONE 29
0G6 CZ1 NH1 SINGLE NONE 30
0G6 CZ1 NH2 DOUBLE NONE 31
0G6 CL C3 SINGLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0G6 MurckoScaffold S1 scaffold O=C(CCc1ccccc1)N1CCCC1 InChI=1S/C13H17NO/c15-13(14-10-4-5-11-14)9-8-12-6-2-1-3-7-12/h1-3,6-7H,4-5,8-11H2 AJQCDEYAAFXBBP-UHFFFAOYSA-N
0G6 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
0G6 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
0G6 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0G6 CA S1 1
0G6 C S1 1
0G6 O S1 1
0G6 CB S1 1
0G6 CG S1 1
0G6 CD1 S1 1
0G6 CD2 S1 1
0G6 CE1 S1 1
0G6 CE2 S1 1
0G6 CZ S1 1
0G6 N1 S1 1
0G6 CA1 S1 1
0G6 CB1 S1 1
0G6 CG1 S1 1
0G6 CD S1 1
0G6 N1 F1 1
0G6 C F1 1
0G6 O F1 1
0G6 CA F1 1
0G6 N2 F1 2
0G6 C1 F1 2
0G6 O1 F1 2
0G6 CA1 F1 2
0G6 O F2 1
0G6 C F2 1
0G6 CA F2 1
0G6 N F2 1
0G6 O1 F2 2
0G6 C1 F2 2
0G6 CA1 F2 2
0G6 N1 F2 2
0G6 CG F3 1
0G6 CD1 F3 1
0G6 CE1 F3 1
0G6 CZ F3 1
0G6 CE2 F3 1
0G6 CD2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0G6
_pdbe_chem_comp_rdkit_properties.exactmw 453.238
_pdbe_chem_comp_rdkit_properties.amw 453.995
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 31
_pdbe_chem_comp_rdkit_properties.NumAtoms 65
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 235.865
_pdbe_chem_comp_rdkit_properties.tpsa 159.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.979
_pdbe_chem_comp_rdkit_properties.CrippenMR 119.604
_pdbe_chem_comp_rdkit_properties.chi0v 15.542
_pdbe_chem_comp_rdkit_properties.chi1v 7.915
_pdbe_chem_comp_rdkit_properties.chi2v 3.002
_pdbe_chem_comp_rdkit_properties.chi3v 3.002
_pdbe_chem_comp_rdkit_properties.chi4v 1.736
_pdbe_chem_comp_rdkit_properties.chi0n 48.786
_pdbe_chem_comp_rdkit_properties.chi1n 24.023
_pdbe_chem_comp_rdkit_properties.chi2n 2.831
_pdbe_chem_comp_rdkit_properties.chi3n 2.831
_pdbe_chem_comp_rdkit_properties.chi4n 1.646
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.360
_pdbe_chem_comp_rdkit_properties.kappa1 5.402
_pdbe_chem_comp_rdkit_properties.kappa2 12.484
_pdbe_chem_comp_rdkit_properties.kappa3 7.680
_pdbe_chem_comp_rdkit_properties.Phi 2.176
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0G6 UniChem DrugBank DB06841
0G6 UniChem PDBe 0G6
0G6 UniChem PubChem 131704300
0G6 UniChem PubChem 137347858
0G6 UniChem 'Probes And Drugs' PD059112
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0G6 N 1.901 1.893 -0.681 ETKDGv3 1
0G6 CA 3.111 2.389 -0.025 ETKDGv3 2
0G6 C 3.078 2.179 1.478 ETKDGv3 3
0G6 O 3.514 3.112 2.206 ETKDGv3 4
0G6 CB 4.390 1.799 -0.660 ETKDGv3 5
0G6 CG 4.468 0.295 -0.580 ETKDGv3 6
0G6 CD1 5.116 -0.308 0.434 ETKDGv3 7
0G6 CD2 3.804 -0.538 -1.615 ETKDGv3 8
0G6 CE1 5.152 -1.782 0.523 ETKDGv3 9
0G6 CE2 3.836 -1.873 -1.529 ETKDGv3 10
0G6 CZ 4.541 -2.526 -0.406 ETKDGv3 11
0G6 N1 2.674 0.941 2.107 ETKDGv3 12
0G6 CA1 1.749 -0.049 1.563 ETKDGv3 13
0G6 C1 0.339 0.482 1.567 ETKDGv3 14
0G6 O1 -0.061 1.192 2.531 ETKDGv3 15
0G6 CB1 1.869 -1.261 2.487 ETKDGv3 16
0G6 CG1 2.444 -0.726 3.793 ETKDGv3 17
0G6 CD 3.151 0.574 3.433 ETKDGv3 18
0G6 N2 -0.553 0.147 0.494 ETKDGv3 19
0G6 CA2 -1.945 0.615 0.450 ETKDGv3 20
0G6 C2 -2.808 -0.174 1.476 ETKDGv3 21
0G6 O2 -2.671 -1.555 1.258 ETKDGv3 22
0G6 CB2 -2.478 0.615 -1.007 ETKDGv3 23
0G6 CG2 -2.710 -0.780 -1.620 ETKDGv3 24
0G6 CD3 -3.079 -0.691 -3.108 ETKDGv3 25
0G6 NE -4.322 0.058 -3.306 ETKDGv3 26
0G6 CZ1 -5.626 -0.383 -2.882 ETKDGv3 27
0G6 NH1 -6.704 0.557 -2.867 ETKDGv3 28
0G6 NH2 -5.847 -1.616 -2.534 ETKDGv3 29
0G6 C3 -4.299 0.215 1.466 ETKDGv3 30
0G6 CL -4.534 1.934 1.885 ETKDGv3 31
0G6 H 1.090 2.451 -0.327 ETKDGv3 32
0G6 H2 1.966 2.106 -1.703 ETKDGv3 33
0G6 HA 3.159 3.489 -0.202 ETKDGv3 34
0G6 HB2 5.282 2.254 -0.174 ETKDGv3 35
0G6 HB3 4.436 2.104 -1.729 ETKDGv3 36
0G6 HD1 5.605 0.277 1.203 ETKDGv3 37
0G6 HD2 3.284 -0.067 -2.440 ETKDGv3 38
0G6 HE1 5.666 -2.258 1.348 ETKDGv3 39
0G6 HE2 3.346 -2.478 -2.280 ETKDGv3 40
0G6 HZ 4.561 -3.606 -0.338 ETKDGv3 41
0G6 HA1 2.049 -0.348 0.541 ETKDGv3 42
0G6 HB21 2.586 -1.988 2.047 ETKDGv3 43
0G6 HB31 0.900 -1.782 2.651 ETKDGv3 44
0G6 HG2 3.145 -1.456 4.254 ETKDGv3 45
0G6 HG3 1.614 -0.517 4.504 ETKDGv3 46
0G6 HD21 4.251 0.421 3.404 ETKDGv3 47
0G6 HD3 2.901 1.368 4.170 ETKDGv3 48
0G6 H1 -0.162 -0.390 -0.312 ETKDGv3 49
0G6 HA2 -1.945 1.683 0.762 ETKDGv3 50
0G6 HB22 -1.746 1.168 -1.638 ETKDGv3 51
0G6 HB32 -3.424 1.196 -1.047 ETKDGv3 52
0G6 HG21 -3.523 -1.304 -1.080 ETKDGv3 53
0G6 HG31 -1.793 -1.398 -1.530 ETKDGv3 54
0G6 HD22 -2.254 -0.182 -3.654 ETKDGv3 55
0G6 HD31 -3.171 -1.707 -3.545 ETKDGv3 56
0G6 HE -4.246 1.002 -3.749 ETKDGv3 57
0G6 HH11 -7.664 0.270 -2.575 ETKDGv3 58
0G6 HH12 -6.542 1.551 -3.142 ETKDGv3 59
0G6 HH21 -6.799 -1.920 -2.232 ETKDGv3 60
0G6 HH22 -5.102 -2.346 -2.556 ETKDGv3 61
0G6 H11 -4.766 0.008 0.482 ETKDGv3 62
0G6 H21 -4.838 -0.391 2.224 ETKDGv3 63
0G6 H33 -2.416 0.066 2.492 ETKDGv3 64
0G6 H34 -2.950 -2.011 2.095 ETKDGv3 65
#