data_0GE
#
_chem_comp.id 0GE
_chem_comp.name
N-{[5-(dimethylamino)naphthalen-1-yl]sulfonyl}-L-alpha-glutamyl-N-[(2S,3S)-6-carbamimidamido-1-chloro-2-hydroxyhexan-3-yl]glycinamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H38 Cl N7 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "1,5-DANSYL-GLU-GLY-ARG-CHLOROMETHYL KETONE, bound form"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-09-14
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 628.141
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0GE
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1CVW
_chem_comp.pdbx_subcomponent_list "ANS GLU GLY AR7 0QE"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0GE C11 C11 C 0 1 Y N N N N N 1.351 37.124 29.975 -4.562 -0.269 -0.184 C1 ANS 1
0GE C21 C21 C 0 1 Y N N N N N 0.363 37.170 29.004 -4.702 -0.615 -1.492 C2 ANS 2
0GE C3 C3 C 0 1 Y N N N N N -0.759 37.996 29.200 -4.541 -1.936 -1.906 C3 ANS 3
0GE C4 C4 C 0 1 Y N N N N N -0.843 38.805 30.339 -4.240 -2.918 -1.012 C4 ANS 4
0GE C4A C4A C 0 1 Y N N N N N 0.144 38.716 31.355 -4.089 -2.598 0.346 C4A ANS 5
0GE C5 C5 C 0 1 Y N N N N N 0.072 39.522 32.552 -3.778 -3.590 1.302 C5 ANS 6
0GE C6 C6 C 0 1 Y N N N N N 1.010 39.319 33.592 -3.638 -3.233 2.626 C6 ANS 7
0GE C7 C7 C 0 1 Y N N N N N 2.054 38.399 33.440 -3.801 -1.911 3.028 C7 ANS 8
0GE C8 C8 C 0 1 Y N N N N N 2.203 37.694 32.243 -4.101 -0.934 2.128 C8 ANS 9
0GE C8A C8A C 0 1 Y N N N N N 1.263 37.834 31.202 -4.252 -1.256 0.768 C8A ANS 10
0GE N3 N3 N 0 1 N N N N N N -0.972 40.549 32.642 -3.614 -4.917 0.910 N ANS 11
0GE CM1 CM1 C 0 1 N N N N N N -1.943 40.164 33.720 -2.266 -5.399 1.237 CM1 ANS 12
0GE CM2 CM2 C 0 1 N N N N N N -0.349 41.866 33.014 -4.641 -5.775 1.515 CM2 ANS 13
0GE S S S 0 1 N N N N N N 2.503 35.871 29.497 -4.763 1.410 0.315 S ANS 14
0GE O1S O1S O 0 1 N N N N N N 2.655 34.960 30.595 -5.009 2.154 -0.870 O1S ANS 15
0GE O2S O2S O 0 1 N N N N N N 2.193 35.361 28.185 -5.653 1.395 1.423 O2S ANS 16
0GE N N N 0 1 N N N N N N 3.546 36.747 29.628 -3.301 1.927 0.896 N GLU 17
0GE CA CA C 0 1 N N S N N N 4.027 37.561 28.503 -2.149 2.025 -0.003 CA GLU 18
0GE C C C 0 1 N N N N N N 4.890 36.708 27.560 -1.064 1.091 0.467 C GLU 19
0GE O O O 0 1 N N N N N N 5.829 36.017 27.983 -1.236 0.410 1.456 O GLU 20
0GE CB CB C 0 1 N N N N N N 4.857 38.734 29.023 -1.621 3.461 -0.001 CB GLU 21
0GE CG CG C 0 1 N N N N N N 4.401 40.078 28.454 -2.699 4.401 -0.544 CG GLU 22
0GE CD CD C 0 1 N N N N N N 5.468 41.162 28.571 -2.196 5.821 -0.502 CD GLU 23
0GE OE1 OE1 O 0 1 N N N N N N 5.823 41.591 29.733 -1.088 6.056 -0.081 OE1 GLU 24
0GE OE2 OE2 O 0 1 N N N N N N 6.014 41.645 27.507 -2.978 6.823 -0.932 OE2 GLU 25
0GE N1 N1 N 0 1 N N N N N N 4.541 36.787 26.289 0.098 1.012 -0.211 N GLY 26
0GE CA1 CA1 C 0 1 N N N N N N 5.230 36.047 25.221 1.153 0.104 0.246 CA GLY 27
0GE C1 C1 C 0 1 N N N N N N 6.664 36.553 25.069 2.339 0.205 -0.679 C GLY 28
0GE O1 O1 O 0 1 N N N N N N 6.941 37.748 25.250 2.306 0.961 -1.627 O GLY 29
0GE N2 N2 N 0 1 N N N N N N 7.540 35.661 24.707 3.435 -0.545 -0.453 N AR7 30
0GE CA2 CA2 C 0 1 N N S N N N 8.954 36.012 24.643 4.588 -0.447 -1.352 CA AR7 31
0GE C2 C2 C 0 1 N N S N N N 9.573 35.912 23.228 4.380 -1.375 -2.551 C AR7 32
0GE O2 O2 O 0 1 N N N N N N 10.687 36.411 22.983 5.504 -1.279 -3.428 O AR7 33
0GE CB1 CB1 C 0 1 N N N N N N 9.773 35.018 25.485 5.856 -0.859 -0.603 CB AR7 34
0GE CG1 CG1 C 0 1 N N N N N N 9.464 35.112 26.971 6.133 0.142 0.521 CG AR7 35
0GE CD1 CD1 C 0 1 N N N N N N 9.904 33.903 27.783 7.401 -0.270 1.270 CD AR7 36
0GE NE NE N 0 1 N N N N N N 9.624 34.123 29.208 7.666 0.689 2.346 NE AR7 37
0GE CZ CZ C 0 1 N N N N N N 10.048 33.328 30.191 8.761 0.523 3.160 CZ AR7 38
0GE NH1 NH1 N 0 1 N N N N N N 10.774 32.251 29.908 9.564 -0.487 2.976 NH1 AR7 39
0GE NH2 NH2 N 0 1 N N N N N N 9.753 33.611 31.462 9.009 1.423 4.170 NH2 AR7 40
0GE CM CM C 0 1 N N N N N N 8.746 35.650 22.001 3.112 -0.963 -3.301 C1 0QE 41
0GE CL CL CL 0 0 N Y N N N N 7.368 35.918 21.842 2.786 -2.143 -4.625 CL1 0QE 42
0GE H21 H21 H 0 1 N N N N N N 0.454 36.577 28.106 -4.941 0.146 -2.221 H2 ANS 43
0GE H3 H3 H 0 1 N N N N N N -1.556 38.006 28.471 -4.657 -2.184 -2.950 H3 ANS 44
0GE H4 H4 H 0 1 N N N N N N -1.663 39.500 30.445 -4.119 -3.938 -1.347 H4 ANS 45
0GE H6 H6 H 0 1 N N N N N N 0.920 39.879 34.511 -3.400 -3.989 3.360 H6 ANS 46
0GE H7 H7 H 0 1 N N N N N N 2.747 38.233 34.251 -3.687 -1.655 4.071 H7 ANS 47
0GE H8 H8 H 0 1 N N N N N N 3.048 37.034 32.114 -4.224 0.086 2.458 H8 ANS 48
0GE HM11 HM11 H 0 0 N N N N N N -2.730 40.929 33.795 -2.106 -5.330 2.313 HM11 ANS 49
0GE HM12 HM12 H 0 0 N N N N N N -2.397 39.193 33.474 -2.165 -6.438 0.921 HM12 ANS 50
0GE HM13 HM13 H 0 0 N N N N N N -1.413 40.088 34.681 -1.526 -4.788 0.720 HM13 ANS 51
0GE HM21 HM21 H 0 0 N N N N N N -1.131 42.636 33.082 -5.629 -5.437 1.199 HM21 ANS 52
0GE HM22 HM22 H 0 0 N N N N N N 0.156 41.771 33.986 -4.490 -6.805 1.192 HM22 ANS 53
0GE HM23 HM23 H 0 0 N N N N N N 0.384 42.155 32.246 -4.568 -5.719 2.601 HM23 ANS 54
0GE H H H 0 1 N N N N N N 4.328 36.191 29.908 -3.208 2.164 1.832 H GLU 55
0GE HA HA H 0 1 N N N N N N 3.156 37.944 27.951 -2.452 1.750 -1.013 HA GLU 56
0GE HB2 HB2 H 0 1 N N N N N N 4.760 38.770 30.118 -1.365 3.752 1.018 HB2 GLU 57
0GE HB3 HB3 H 0 1 N N N N N N 5.906 38.572 28.734 -0.734 3.523 -0.631 HB3 GLU 58
0GE HG2 HG2 H 0 1 N N N N N N 4.162 39.941 27.389 -2.934 4.129 -1.573 HG2 GLU 59
0GE HG3 HG3 H 0 1 N N N N N N 3.511 40.406 29.011 -3.597 4.316 0.068 HG3 GLU 60
0GE HE2 HE2 H 0 1 N N N N N N 6.654 42.304 27.750 -2.611 7.717 -0.886 HE2 GLU 61
0GE H1 H1 H 0 1 N N N N N N 3.773 37.377 26.041 0.236 1.556 -1.002 H GLY 62
0GE HA2 HA2 H 0 1 N N N N N N 5.248 34.977 25.475 1.456 0.378 1.256 HA2 GLY 63
0GE HA3 HA3 H 0 1 N N N N N N 4.692 36.194 24.273 0.777 -0.920 0.244 HA3 GLY 64
0GE H2 H2 H 0 1 N N N N N N 7.243 34.735 24.473 3.462 -1.150 0.305 H AR7 65
0GE HA1 HA1 H 0 1 N N N N N N 8.995 37.053 24.997 4.690 0.581 -1.702 HA AR7 66
0GE H37 H37 H 0 1 N N N N N N 9.768 34.887 23.577 4.278 -2.402 -2.202 HF AR7 67
0GE H38 H38 H 0 1 N N N N N N 10.910 36.257 22.073 6.345 -1.526 -3.019 H1 AR7 68
0GE HB21 HB21 H 0 0 N N N N N N 9.537 33.999 25.145 5.720 -1.854 -0.178 HB1 AR7 69
0GE HB31 HB31 H 0 0 N N N N N N 10.841 35.236 25.338 6.699 -0.872 -1.294 HB2 AR7 70
0GE HG21 HG21 H 0 0 N N N N N N 9.987 35.994 27.369 6.269 1.137 0.095 HG1 AR7 71
0GE HG31 HG31 H 0 0 N N N N N N 8.375 35.215 27.083 5.290 0.155 1.212 HG2 AR7 72
0GE HD2 HD2 H 0 1 N N N N N N 9.354 33.015 27.438 7.265 -1.264 1.695 HD1 AR7 73
0GE HD3 HD3 H 0 1 N N N N N N 10.984 33.747 27.645 8.244 -0.282 0.579 HD2 AR7 74
0GE HE HE H 0 1 N N N N N N 9.079 34.923 29.458 7.069 1.441 2.484 HNE AR7 75
0GE HH1 HH1 H 0 1 N N N N N N 11.031 31.746 30.732 10.336 -0.604 3.550 HN11 AR7 76
0GE HH21 HH21 H 0 0 N N N N N N 10.078 33.014 32.196 8.412 2.175 4.307 HN21 AR7 77
0GE HH22 HH22 H 0 0 N N N N N N 9.207 34.420 31.680 9.782 1.306 4.745 HN22 AR7 78
0GE HM1 HM1 H 0 1 N N N N N N 9.229 36.253 21.218 2.269 -0.950 -2.610 H 0QE 79
0GE HM2 HM2 H 0 1 N N N N N N 8.828 34.564 21.849 3.247 0.032 -3.726 HA 0QE 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0GE C11 C21 DOUB Y N 1
0GE C11 C8A SING Y N 2
0GE C11 S SING N N 3
0GE C21 C3 SING Y N 4
0GE C21 H21 SING N N 5
0GE C3 C4 DOUB Y N 6
0GE C3 H3 SING N N 7
0GE C4 C4A SING Y N 8
0GE C4 H4 SING N N 9
0GE C4A C5 DOUB Y N 10
0GE C4A C8A SING Y N 11
0GE C5 C6 SING Y N 12
0GE C5 N3 SING N N 13
0GE C6 C7 DOUB Y N 14
0GE C6 H6 SING N N 15
0GE C7 C8 SING Y N 16
0GE C7 H7 SING N N 17
0GE C8 C8A DOUB Y N 18
0GE C8 H8 SING N N 19
0GE N3 CM1 SING N N 20
0GE N3 CM2 SING N N 21
0GE CM1 HM11 SING N N 22
0GE CM1 HM12 SING N N 23
0GE CM1 HM13 SING N N 24
0GE CM2 HM21 SING N N 25
0GE CM2 HM22 SING N N 26
0GE CM2 HM23 SING N N 27
0GE S O1S DOUB N N 28
0GE S O2S DOUB N N 29
0GE N CA SING N N 30
0GE N H SING N N 31
0GE N S SING N N 32
0GE CA C SING N N 33
0GE CA CB SING N N 34
0GE CA HA SING N N 35
0GE C O DOUB N N 36
0GE C N1 SING N N 37
0GE CB CG SING N N 38
0GE CB HB2 SING N N 39
0GE CB HB3 SING N N 40
0GE CG CD SING N N 41
0GE CG HG2 SING N N 42
0GE CG HG3 SING N N 43
0GE CD OE1 DOUB N N 44
0GE CD OE2 SING N N 45
0GE OE2 HE2 SING N N 46
0GE N1 CA1 SING N N 47
0GE N1 H1 SING N N 48
0GE CA1 C1 SING N N 49
0GE CA1 HA2 SING N N 50
0GE CA1 HA3 SING N N 51
0GE C1 O1 DOUB N N 52
0GE C1 N2 SING N N 53
0GE N2 CA2 SING N N 54
0GE N2 H2 SING N N 55
0GE CA2 CB1 SING N N 56
0GE CA2 C2 SING N N 57
0GE CA2 HA1 SING N N 58
0GE CB1 CG1 SING N N 59
0GE CB1 HB21 SING N N 60
0GE CB1 HB31 SING N N 61
0GE CG1 CD1 SING N N 62
0GE CG1 HG21 SING N N 63
0GE CG1 HG31 SING N N 64
0GE CD1 NE SING N N 65
0GE CD1 HD2 SING N N 66
0GE CD1 HD3 SING N N 67
0GE NE CZ SING N N 68
0GE NE HE SING N N 69
0GE CZ NH1 DOUB N N 70
0GE CZ NH2 SING N N 71
0GE NH1 HH1 SING N N 72
0GE NH2 HH21 SING N N 73
0GE NH2 HH22 SING N N 74
0GE C2 O2 SING N N 75
0GE C2 CM SING N N 76
0GE CM HM1 SING N N 77
0GE CM HM2 SING N N 78
0GE CL CM SING N N 79
0GE C2 H37 SING N N 80
0GE O2 H38 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0GE SMILES ACDLabs 12.01 ClCC(O)C(NC(=O)CNC(=O)C(NS(=O)(=O)c2cccc1c(cccc12)N(C)C)CCC(=O)O)CCCNC(=[N@H])N
0GE InChI InChI 1.03 InChI=1S/C26H38ClN7O7S/c1-34(2)20-9-3-7-17-16(20)6-4-10-22(17)42(40,41)33-19(11-12-24(37)38)25(39)31-15-23(36)32-18(21(35)14-27)8-5-13-30-26(28)29/h3-4,6-7,9-10,18-19,21,33,35H,5,8,11-15H2,1-2H3,(H,31,39)(H,32,36)(H,37,38)(H4,28,29,30)/t18-,19-,21+/m0/s1
0GE InChIKey InChI 1.03 AKFRXQNHCCSRJN-IRFCIJBXSA-N
0GE SMILES_CANONICAL CACTVS 3.370 CN(C)c1cccc2c1cccc2[S](=O)(=O)N[C@@H](CCC(O)=O)C(=O)NCC(=O)N[C@@H](CCCNC(N)=N)[C@H](O)CCl
0GE SMILES CACTVS 3.370 CN(C)c1cccc2c1cccc2[S](=O)(=O)N[CH](CCC(O)=O)C(=O)NCC(=O)N[CH](CCCNC(N)=N)[CH](O)CCl
0GE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "[H]/N=C(\\N)/NCCCC(C(CCl)O)NC(=O)CNC(=O)C(CCC(=O)O)NS(=O)(=O)c1cccc2c1cccc2N(C)C"
0GE SMILES "OpenEye OEToolkits" 1.7.2 CN(C)c1cccc2c1cccc2S(=O)(=O)NC(CCC(=O)O)C(=O)NCC(=O)NC(CCCNC(=N)N)C(CCl)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0GE "SYSTEMATIC NAME" ACDLabs 12.01 N-{[5-(dimethylamino)naphthalen-1-yl]sulfonyl}-L-alpha-glutamyl-N-[(2S,3S)-6-carbamimidamido-1-chloro-2-hydroxyhexan-3-yl]glycinamide
0GE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "5-[[2-[(6-carbamimidamido-1-chloranyl-2-oxidanyl-hexan-3-yl)amino]-2-oxidanylidene-ethyl]amino]-4-[[5-(dimethylamino)naphthalen-1-yl]sulfonylamino]-5-oxidanylidene-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0GE 'Create component' 2008-09-14 RCSB
0GE 'Modify aromatic_flag' 2011-06-04 RCSB
0GE 'Modify descriptor' 2011-06-04 RCSB
0GE 'Other modification' 2011-08-06 RCSB
0GE 'Other modification' 2011-09-27 RCSB
0GE 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0GE
_pdbx_chem_comp_synonyms.name "1,5-DANSYL-GLU-GLY-ARG-CHLOROMETHYL KETONE, bound form"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 0GE
_pdbe_chem_comp_synonyms.name '1,5-DANSYL-GLU-GLY-ARG-CHLOROMETHYL KETONE, bound form'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0GE C11 C 16.796 4.466 1
0GE C21 C 15.497 5.216 2
0GE C3 C 15.497 6.716 3
0GE C4 C 16.796 7.466 4
0GE C4A C 18.095 6.716 5
0GE C5 C 19.436 7.519 6
0GE C6 C 20.795 6.748 7
0GE C7 C 20.795 5.185 8
0GE C8 C 19.436 4.415 9
0GE C8A C 18.095 5.216 10
0GE N3 N 19.418 9.018 11
0GE CM1 C 20.709 9.784 12
0GE CM2 C 18.111 9.754 13
0GE S S 16.796 2.966 14
0GE O1S O 15.296 2.966 15
0GE O2S O 18.296 2.966 16
0GE N N 16.796 1.467 17
0GE CA C 15.497 0.717 18
0GE C C 15.497 -0.783 19
0GE O O 16.796 -1.533 20
0GE CB C 14.198 1.467 21
0GE CG C 12.899 0.717 22
0GE CD C 11.600 1.467 23
0GE OE1 O 10.301 0.717 24
0GE OE2 O 11.600 2.966 25
0GE N1 N 14.198 -1.533 26
0GE CA1 C 14.198 -3.034 27
0GE C1 C 12.899 -3.784 28
0GE O1 O 11.600 -3.034 29
0GE N2 N 12.899 -5.284 30
0GE CA2 C 11.600 -6.034 31
0GE C2 C 11.600 -7.534 32
0GE O2 O 10.301 -8.284 33
0GE CB1 C 10.301 -5.284 34
0GE CG1 C 9.002 -6.034 35
0GE CD1 C 7.702 -5.284 36
0GE NE N 6.404 -6.034 37
0GE CZ C 5.104 -5.284 38
0GE NH1 N 3.805 -6.034 39
0GE NH2 N 5.104 -3.784 40
0GE CM C 12.899 -8.284 41
0GE CL Cl 12.899 -9.784 42
0GE HH1 H 3.805 -7.533 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0GE C11 C21 DOUBLE NONE 1
0GE C11 C8A SINGLE NONE 2
0GE C11 S SINGLE NONE 3
0GE C21 C3 SINGLE NONE 4
0GE C3 C4 DOUBLE NONE 5
0GE C4 C4A SINGLE NONE 6
0GE C4A C5 SINGLE NONE 7
0GE C4A C8A DOUBLE NONE 8
0GE C5 C6 DOUBLE NONE 9
0GE C5 N3 SINGLE NONE 10
0GE C6 C7 SINGLE NONE 11
0GE C7 C8 DOUBLE NONE 12
0GE C8 C8A SINGLE NONE 13
0GE N3 CM1 SINGLE NONE 14
0GE N3 CM2 SINGLE NONE 15
0GE S O1S DOUBLE NONE 16
0GE S O2S DOUBLE NONE 17
0GE N CA SINGLE NONE 18
0GE N S SINGLE NONE 19
0GE CA C SINGLE NONE 20
0GE CA CB SINGLE BEGINDASH 21
0GE C O DOUBLE NONE 22
0GE C N1 SINGLE NONE 23
0GE CB CG SINGLE NONE 24
0GE CG CD SINGLE NONE 25
0GE CD OE1 DOUBLE NONE 26
0GE CD OE2 SINGLE NONE 27
0GE N1 CA1 SINGLE NONE 28
0GE CA1 C1 SINGLE NONE 29
0GE C1 O1 DOUBLE NONE 30
0GE C1 N2 SINGLE NONE 31
0GE N2 CA2 SINGLE NONE 32
0GE CA2 CB1 SINGLE BEGINDASH 33
0GE CA2 C2 SINGLE NONE 34
0GE CB1 CG1 SINGLE NONE 35
0GE CG1 CD1 SINGLE NONE 36
0GE CD1 NE SINGLE NONE 37
0GE NE CZ SINGLE ENDUPRIGHT 38
0GE CZ NH1 DOUBLE NONE 39
0GE CZ NH2 SINGLE ENDUPRIGHT 40
0GE C2 O2 SINGLE BEGINWEDGE 41
0GE C2 CM SINGLE NONE 42
0GE CL CM SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0GE MurckoScaffold S1 scaffold c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
0GE amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
0GE napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
0GE peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
0GE phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
0GE Z431570984 F5 fragment CNCCNS(C)(=O)=O.Cl 'InChI=1S/C4H12N2O2S.ClH/c1-5-3-4-6-9(2,7)8;/h5-6H,3-4H2,1-2H3;1H' KOWKLRCTVDADQT-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0GE C11 S1 1
0GE C21 S1 1
0GE C3 S1 1
0GE C4 S1 1
0GE C4A S1 1
0GE C5 S1 1
0GE C6 S1 1
0GE C7 S1 1
0GE C8 S1 1
0GE C8A S1 1
0GE N1 F1 1
0GE C F1 1
0GE O F1 1
0GE CA F1 1
0GE N2 F1 2
0GE C1 F1 2
0GE O1 F1 2
0GE CA1 F1 2
0GE C21 F2 1
0GE C3 F2 1
0GE C4 F2 1
0GE C4A F2 1
0GE C8A F2 1
0GE C11 F2 1
0GE C8 F2 1
0GE C7 F2 1
0GE C6 F2 1
0GE C5 F2 1
0GE O F3 1
0GE C F3 1
0GE CA F3 1
0GE N F3 1
0GE O1 F3 2
0GE C1 F3 2
0GE CA1 F3 2
0GE N1 F3 2
0GE C11 F4 1
0GE C21 F4 1
0GE C3 F4 1
0GE C4 F4 1
0GE C4A F4 1
0GE C8A F4 1
0GE C4A F4 2
0GE C5 F4 2
0GE C6 F4 2
0GE C7 F4 2
0GE C8 F4 2
0GE C8A F4 2
0GE CL F5 1
0GE CA1 F5 1
0GE N1 F5 1
0GE C F5 1
0GE CA F5 1
0GE N F5 1
0GE S F5 1
0GE O1S F5 1
0GE O2S F5 1
0GE C11 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0GE
_pdbe_chem_comp_rdkit_properties.exactmw 627.224
_pdbe_chem_comp_rdkit_properties.amw 628.152
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 20
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.462
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 303.042
_pdbe_chem_comp_rdkit_properties.tpsa 227.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.036
_pdbe_chem_comp_rdkit_properties.CrippenMR 157.612
_pdbe_chem_comp_rdkit_properties.chi0v 21.347
_pdbe_chem_comp_rdkit_properties.chi1v 11.681
_pdbe_chem_comp_rdkit_properties.chi2v 5.201
_pdbe_chem_comp_rdkit_properties.chi3v 5.201
_pdbe_chem_comp_rdkit_properties.chi4v 3.413
_pdbe_chem_comp_rdkit_properties.chi0n 57.774
_pdbe_chem_comp_rdkit_properties.chi1n 28.310
_pdbe_chem_comp_rdkit_properties.chi2n 3.784
_pdbe_chem_comp_rdkit_properties.chi3n 3.784
_pdbe_chem_comp_rdkit_properties.chi4n 2.277
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.660
_pdbe_chem_comp_rdkit_properties.kappa1 8.937
_pdbe_chem_comp_rdkit_properties.kappa2 16.101
_pdbe_chem_comp_rdkit_properties.kappa3 10.313
_pdbe_chem_comp_rdkit_properties.Phi 3.426
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0GE UniChem PDBe 0GE
0GE UniChem PubChem 137347859
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0GE C11 -4.176 -0.097 1.413 ETKDGv3 1
0GE C21 -4.364 -1.422 1.529 ETKDGv3 2
0GE C3 -5.289 -2.132 0.631 ETKDGv3 3
0GE C4 -5.940 -1.469 -0.327 ETKDGv3 4
0GE C4A -5.739 -0.009 -0.498 ETKDGv3 5
0GE C5 -6.459 0.728 -1.577 ETKDGv3 6
0GE C6 -6.303 2.056 -1.690 ETKDGv3 7
0GE C7 -5.416 2.784 -0.768 ETKDGv3 8
0GE C8 -4.755 2.129 0.190 ETKDGv3 9
0GE C8A -4.911 0.658 0.348 ETKDGv3 10
0GE N3 -7.290 0.022 -2.513 ETKDGv3 11
0GE CM1 -6.654 -0.750 -3.579 ETKDGv3 12
0GE CM2 -8.692 0.410 -2.669 ETKDGv3 13
0GE S -3.016 0.706 2.484 ETKDGv3 14
0GE O1S -3.698 1.840 3.197 ETKDGv3 15
0GE O2S -2.501 -0.256 3.519 ETKDGv3 16
0GE N -1.677 1.319 1.555 ETKDGv3 17
0GE CA -0.963 0.230 0.851 ETKDGv3 18
0GE C 0.528 0.268 1.135 ETKDGv3 19
0GE O 1.360 0.415 0.200 ETKDGv3 20
0GE CB -1.309 0.244 -0.663 ETKDGv3 21
0GE CG -1.408 1.638 -1.315 ETKDGv3 22
0GE CD -0.096 2.351 -1.374 ETKDGv3 23
0GE OE1 0.734 2.072 -2.281 ETKDGv3 24
0GE OE2 0.218 3.306 -0.413 ETKDGv3 25
0GE N1 0.995 0.082 2.479 ETKDGv3 26
0GE CA1 2.415 0.084 2.826 ETKDGv3 27
0GE C1 3.102 -1.147 2.310 ETKDGv3 28
0GE O1 2.442 -2.207 2.128 ETKDGv3 29
0GE N2 4.520 -1.131 2.080 ETKDGv3 30
0GE CA2 5.246 -2.301 1.569 ETKDGv3 31
0GE C2 6.724 -2.273 2.046 ETKDGv3 32
0GE O2 7.457 -1.318 1.323 ETKDGv3 33
0GE CB1 5.077 -2.468 0.025 ETKDGv3 34
0GE CG1 4.637 -1.220 -0.770 ETKDGv3 35
0GE CD1 5.725 -0.145 -0.874 ETKDGv3 36
0GE NE 5.284 0.934 -1.756 ETKDGv3 37
0GE CZ 4.377 1.964 -1.335 ETKDGv3 38
0GE NH1 3.966 2.011 -0.107 ETKDGv3 39
0GE NH2 3.942 2.951 -2.273 ETKDGv3 40
0GE CM 7.398 -3.651 1.923 ETKDGv3 41
0GE CL 8.987 -3.653 2.734 ETKDGv3 42
0GE H21 -3.836 -1.997 2.278 ETKDGv3 43
0GE H3 -5.439 -3.198 0.749 ETKDGv3 44
0GE H4 -6.620 -2.010 -0.971 ETKDGv3 45
0GE H6 -6.809 2.604 -2.475 ETKDGv3 46
0GE H7 -5.293 3.854 -0.877 ETKDGv3 47
0GE H8 -4.102 2.695 0.838 ETKDGv3 48
0GE HM11 -5.650 -1.107 -3.264 ETKDGv3 49
0GE HM12 -7.275 -1.637 -3.828 ETKDGv3 50
0GE HM13 -6.542 -0.116 -4.483 ETKDGv3 51
0GE HM21 -9.298 -0.470 -2.973 ETKDGv3 52
0GE HM22 -9.097 0.794 -1.708 ETKDGv3 53
0GE HM23 -8.779 1.199 -3.445 ETKDGv3 54
0GE H -1.050 1.823 2.223 ETKDGv3 55
0GE HA -1.288 -0.766 1.227 ETKDGv3 56
0GE HB2 -0.594 -0.389 -1.233 ETKDGv3 57
0GE HB3 -2.302 -0.240 -0.788 ETKDGv3 58
0GE HG2 -2.145 2.270 -0.778 ETKDGv3 59
0GE HG3 -1.791 1.516 -2.352 ETKDGv3 60
0GE HE2 1.103 3.798 -0.438 ETKDGv3 61
0GE H1 0.298 -0.056 3.245 ETKDGv3 62
0GE HA2 2.524 0.108 3.931 ETKDGv3 63
0GE HA3 2.897 0.996 2.414 ETKDGv3 64
0GE H2 5.050 -0.263 2.321 ETKDGv3 65
0GE HA1 4.797 -3.201 2.048 ETKDGv3 66
0GE H37 6.713 -2.004 3.130 ETKDGv3 67
0GE H38 8.174 -0.982 1.920 ETKDGv3 68
0GE HB21 5.999 -2.877 -0.438 ETKDGv3 69
0GE HB31 4.294 -3.240 -0.141 ETKDGv3 70
0GE HG21 3.710 -0.789 -0.342 ETKDGv3 71
0GE HG31 4.384 -1.549 -1.802 ETKDGv3 72
0GE HD2 6.648 -0.600 -1.293 ETKDGv3 73
0GE HD3 5.966 0.274 0.123 ETKDGv3 74
0GE HE 5.680 0.978 -2.722 ETKDGv3 75
0GE HH1 3.313 2.753 0.228 ETKDGv3 76
0GE HH21 4.269 2.918 -3.264 ETKDGv3 77
0GE HH22 3.291 3.715 -1.985 ETKDGv3 78
0GE HM1 6.772 -4.431 2.406 ETKDGv3 79
0GE HM2 7.551 -3.927 0.860 ETKDGv3 80
#