data_0GO
#
_chem_comp.id 0GO
_chem_comp.name
(2S)-N-[(2S,3R)-3-hydroxy-1-phenyl-4-{[3-(propan-2-yl)benzyl]amino}butan-2-yl]-2-[(5S)-6-oxo-1-propyl-1,7-diazaspiro[4.4]non-7-yl]propanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H48 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-01-11
_chem_comp.pdbx_modified_date 2012-11-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 548.759
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0GO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VEU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0GO N1 N1 N 0 1 N N N N N N 30.130 78.734 15.871 -6.238 -1.958 -0.498 N1 0GO 1
0GO C2 C2 C 0 1 N N S N N N 31.162 77.662 15.687 -5.416 -0.769 -0.747 C2 0GO 2
0GO C3 C3 C 0 1 N N N N N N 32.188 78.342 14.744 -5.441 -0.479 -2.255 C3 0GO 3
0GO C4 C4 C 0 1 N N N N N N 32.221 79.775 15.304 -5.829 -1.854 -2.863 C4 0GO 4
0GO C5 C5 C 0 1 N N N N N N 30.702 80.021 15.399 -6.801 -2.410 -1.791 C5 0GO 5
0GO C6 C6 C 0 1 N N N N N N 31.820 77.191 17.020 -5.950 0.441 0.040 C6 0GO 6
0GO C7 C7 C 0 1 N N N N N N 32.103 75.683 16.859 -5.050 0.417 1.297 C7 0GO 7
0GO N8 N8 N 0 1 N N N N N N 31.212 75.311 15.765 -3.821 -0.274 0.886 N8 0GO 8
0GO C9 C9 C 0 1 N N N N N N 30.650 76.359 15.123 -4.005 -0.959 -0.258 C9 0GO 9
0GO O10 O10 O 0 1 N N N N N N 29.843 76.314 14.203 -3.161 -1.630 -0.812 O10 0GO 10
0GO C11 C11 C 0 1 N N S N N N 30.932 73.925 15.362 -2.557 -0.223 1.626 C11 0GO 11
0GO C12 C12 C 0 1 N N N N N N 30.784 73.002 16.554 -1.483 0.362 0.746 C12 0GO 12
0GO N13 N13 N 0 1 N N N N N N 29.615 73.078 17.259 -0.229 0.506 1.218 N13 0GO 13
0GO O14 O14 O 0 1 N N N N N N 31.699 72.232 16.841 -1.747 0.703 -0.388 O14 0GO 14
0GO C15 C15 C 0 1 N N N N N N 29.228 78.816 17.051 -7.305 -1.668 0.468 C15 0GO 15
0GO C16 C16 C 0 1 N N N N N N 27.875 78.110 16.775 -7.979 -2.975 0.890 C16 0GO 16
0GO C17 C17 C 0 1 N N N N N N 26.924 78.222 17.992 -9.091 -2.674 1.897 C17 0GO 17
0GO C18 C18 C 0 1 N N N N N N 31.953 73.435 14.295 -2.157 -1.638 2.048 C18 0GO 18
0GO C19 C19 C 0 1 N N S N N N 29.328 72.253 18.447 0.815 1.075 0.362 C19 0GO 19
0GO C20 C20 C 0 1 N N R N N N 28.384 71.068 18.073 2.185 0.583 0.833 C20 0GO 20
0GO C21 C21 C 0 1 N N N N N N 28.970 70.147 16.975 3.264 1.075 -0.133 C21 0GO 21
0GO N22 N22 N 0 1 N N N N N N 28.137 68.940 16.791 4.562 0.504 0.250 N22 0GO 22
0GO C23 C23 C 0 1 N N N N N N 28.824 67.781 16.165 5.625 0.956 -0.658 C23 0GO 23
0GO C24 C24 C 0 1 N N N N N N 28.731 73.127 19.592 0.766 2.602 0.444 C24 0GO 24
0GO C25 C25 C 0 1 Y N N N N N 29.570 74.348 20.004 -0.536 3.094 -0.135 C25 0GO 25
0GO C26 C26 C 0 1 Y N N N N N 28.905 75.581 20.218 -0.626 3.389 -1.482 C26 0GO 26
0GO C27 C27 C 0 1 Y N N N N N 29.632 76.734 20.603 -1.820 3.840 -2.013 C27 0GO 27
0GO C28 C28 C 0 1 Y N N N N N 31.035 76.659 20.776 -2.924 3.997 -1.196 C28 0GO 28
0GO C29 C29 C 0 1 Y N N N N N 31.707 75.431 20.563 -2.834 3.702 0.152 C29 0GO 29
0GO C30 C30 C 0 1 Y N N N N N 30.980 74.278 20.178 -1.641 3.246 0.681 C30 0GO 30
0GO O31 O31 O 0 1 N N N N N N 28.019 70.277 19.218 2.450 1.092 2.142 O31 0GO 31
0GO C32 C32 C 0 1 Y N N N N N 29.955 67.226 17.054 6.938 0.352 -0.234 C32 0GO 32
0GO C33 C33 C 0 1 Y N N N N N 31.287 67.234 16.570 7.743 1.015 0.674 C33 0GO 33
0GO C34 C34 C 0 1 Y N N N N N 32.333 66.730 17.379 8.948 0.461 1.063 C34 0GO 34
0GO C35 C35 C 0 1 Y N N N N N 32.059 66.215 18.667 9.349 -0.756 0.545 C35 0GO 35
0GO C36 C36 C 0 1 Y N N N N N 30.732 66.194 19.170 8.543 -1.420 -0.362 C36 0GO 36
0GO C37 C37 C 0 1 Y N N N N N 29.688 66.707 18.349 7.336 -0.868 -0.748 C37 0GO 37
0GO C38 C38 C 0 1 N N N N N N 30.466 65.617 20.582 8.980 -2.747 -0.927 C38 0GO 38
0GO C39 C39 C 0 1 N N N N N N 30.368 66.723 21.660 10.307 -2.574 -1.668 C39 0GO 39
0GO C40 C40 C 0 1 N N N N N N 29.250 64.650 20.644 9.160 -3.752 0.213 C40 0GO 40
0GO H2 H2 H 0 1 N N N N N N 31.844 78.327 13.699 -6.193 0.274 -2.491 H2 0GO 41
0GO H3 H3 H 0 1 N N N N N N 33.175 77.862 14.812 -4.457 -0.166 -2.604 H3 0GO 42
0GO H4 H4 H 0 1 N N N N N N 32.711 79.824 16.288 -6.334 -1.729 -3.820 H4 0GO 43
0GO H5 H5 H 0 1 N N N N N N 32.712 80.478 14.615 -4.954 -2.496 -2.967 H5 0GO 44
0GO H6 H6 H 0 1 N N N N N N 30.485 80.826 16.117 -6.829 -3.499 -1.833 H6 0GO 45
0GO H7 H7 H 0 1 N N N N N N 30.292 80.288 14.414 -7.800 -1.998 -1.935 H7 0GO 46
0GO H8 H8 H 0 1 N N N N N N 32.759 77.737 17.194 -5.812 1.365 -0.522 H8 0GO 47
0GO H9 H9 H 0 1 N N N N N N 31.134 77.361 17.863 -6.998 0.303 0.306 H9 0GO 48
0GO H10 H10 H 0 1 N N N N N N 31.856 75.132 17.778 -4.822 1.434 1.617 H10 0GO 49
0GO H11 H11 H 0 1 N N N N N N 33.155 75.502 16.594 -5.541 -0.130 2.102 H11 0GO 50
0GO H12 H12 H 0 1 N N N N N N 29.954 73.934 14.858 -2.680 0.399 2.512 H12 0GO 51
0GO H13 H13 H 0 1 N N N N N N 28.918 73.727 16.953 -0.018 0.233 2.124 H13 0GO 52
0GO H14 H14 H 0 1 N N N N N N 29.716 78.332 17.910 -6.879 -1.180 1.345 H14 0GO 53
0GO H15 H15 H 0 1 N N N N N N 29.039 79.874 17.285 -8.043 -1.011 0.009 H15 0GO 54
0GO H16 H16 H 0 1 N N N N N N 27.397 78.579 15.902 -8.406 -3.464 0.014 H16 0GO 55
0GO H17 H17 H 0 1 N N N N N N 28.062 77.047 16.563 -7.241 -3.633 1.350 H17 0GO 56
0GO H18 H18 H 0 1 N N N N N N 25.976 77.713 17.765 -8.665 -2.185 2.773 H18 0GO 57
0GO H19 H19 H 0 1 N N N N N N 27.393 77.750 18.868 -9.829 -2.016 1.438 H19 0GO 58
0GO H20 H20 H 0 1 N N N N N N 26.728 79.283 18.208 -9.571 -3.605 2.198 H20 0GO 59
0GO H21 H21 H 0 1 N N N N N N 31.720 72.398 14.013 -1.216 -1.601 2.598 H21 0GO 60
0GO H22 H22 H 0 1 N N N N N N 31.891 74.079 13.406 -2.933 -2.061 2.684 H22 0GO 61
0GO H23 H23 H 0 1 N N N N N N 32.970 73.482 14.712 -2.034 -2.261 1.161 H23 0GO 62
0GO H24 H24 H 0 1 N N N N N N 30.272 71.823 18.814 0.651 0.761 -0.669 H24 0GO 63
0GO H25 H25 H 0 1 N N N N N N 27.468 71.513 17.659 2.190 -0.507 0.860 H25 0GO 64
0GO H26 H26 H 0 1 N N N N N N 29.986 69.841 17.267 3.014 0.761 -1.147 H26 0GO 65
0GO H27 H27 H 0 1 N N N N N N 29.013 70.702 16.026 3.319 2.163 -0.093 H27 0GO 66
0GO H28 H28 H 0 1 N N N N N N 27.359 69.187 16.213 4.519 -0.503 0.284 H28 0GO 67
0GO H30 H30 H 0 1 N N N N N N 28.087 66.984 15.991 5.391 0.641 -1.675 H30 0GO 68
0GO H31 H31 H 0 1 N N N N N N 29.253 68.100 15.204 5.696 2.043 -0.621 H31 0GO 69
0GO H32 H32 H 0 1 N N N N N N 27.746 73.489 19.262 0.841 2.912 1.486 H32 0GO 70
0GO H33 H33 H 0 1 N N N N N N 28.609 72.486 20.478 1.597 3.023 -0.122 H33 0GO 71
0GO H34 H34 H 0 1 N N N N N N 27.835 75.642 20.086 0.237 3.266 -2.121 H34 0GO 72
0GO H35 H35 H 0 1 N N N N N N 29.117 77.669 20.764 -1.890 4.071 -3.066 H35 0GO 73
0GO H36 H36 H 0 1 N N N N N N 31.592 77.537 21.070 -3.856 4.350 -1.610 H36 0GO 74
0GO H37 H37 H 0 1 N N N N N N 32.777 75.373 20.695 -3.697 3.824 0.790 H37 0GO 75
0GO H38 H38 H 0 1 N N N N N N 31.497 73.344 20.016 -1.572 3.011 1.733 H38 0GO 76
0GO H39 H39 H 0 1 N N N N N N 27.659 70.842 19.892 2.460 2.058 2.194 H39 0GO 77
0GO H40 H40 H 0 1 N N N N N N 31.503 67.624 15.586 7.430 1.967 1.078 H40 0GO 78
0GO H41 H41 H 0 1 N N N N N N 33.348 66.739 17.010 9.578 0.980 1.771 H41 0GO 79
0GO H42 H42 H 0 1 N N N N N N 32.867 65.834 19.274 10.290 -1.189 0.849 H42 0GO 80
0GO H43 H43 H 0 1 N N N N N N 28.673 66.701 18.718 6.706 -1.388 -1.453 H43 0GO 81
0GO H44 H44 H 0 1 N N N N N N 31.350 65.014 20.839 8.222 -3.114 -1.619 H44 0GO 82
0GO H45 H45 H 0 1 N N N N N N 30.179 66.263 22.641 10.179 -1.858 -2.480 H45 0GO 83
0GO H46 H46 H 0 1 N N N N N N 31.312 67.286 21.694 11.065 -2.207 -0.976 H46 0GO 84
0GO H47 H47 H 0 1 N N N N N N 29.543 67.406 21.410 10.623 -3.534 -2.077 H47 0GO 85
0GO H48 H48 H 0 1 N N N N N N 29.125 64.283 21.673 8.214 -3.876 0.741 H48 0GO 86
0GO H49 H49 H 0 1 N N N N N N 28.340 65.184 20.332 9.476 -4.712 -0.196 H49 0GO 87
0GO H50 H50 H 0 1 N N N N N N 29.424 63.798 19.970 9.917 -3.385 0.905 H50 0GO 88
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0GO O10 C9 DOUB N N 1
0GO C18 C11 SING N N 2
0GO C3 C4 SING N N 3
0GO C3 C2 SING N N 4
0GO C9 C2 SING N N 5
0GO C9 N8 SING N N 6
0GO C4 C5 SING N N 7
0GO C11 N8 SING N N 8
0GO C11 C12 SING N N 9
0GO C5 N1 SING N N 10
0GO C2 N1 SING N N 11
0GO C2 C6 SING N N 12
0GO N8 C7 SING N N 13
0GO N1 C15 SING N N 14
0GO C23 N22 SING N N 15
0GO C23 C32 SING N N 16
0GO C12 O14 DOUB N N 17
0GO C12 N13 SING N N 18
0GO C33 C32 DOUB Y N 19
0GO C33 C34 SING Y N 20
0GO C16 C15 SING N N 21
0GO C16 C17 SING N N 22
0GO N22 C21 SING N N 23
0GO C7 C6 SING N N 24
0GO C21 C20 SING N N 25
0GO C32 C37 SING Y N 26
0GO N13 C19 SING N N 27
0GO C34 C35 DOUB Y N 28
0GO C20 C19 SING N N 29
0GO C20 O31 SING N N 30
0GO C37 C36 DOUB Y N 31
0GO C19 C24 SING N N 32
0GO C35 C36 SING Y N 33
0GO C36 C38 SING N N 34
0GO C24 C25 SING N N 35
0GO C25 C30 DOUB Y N 36
0GO C25 C26 SING Y N 37
0GO C30 C29 SING Y N 38
0GO C26 C27 DOUB Y N 39
0GO C29 C28 DOUB Y N 40
0GO C38 C40 SING N N 41
0GO C38 C39 SING N N 42
0GO C27 C28 SING Y N 43
0GO C3 H2 SING N N 44
0GO C3 H3 SING N N 45
0GO C4 H4 SING N N 46
0GO C4 H5 SING N N 47
0GO C5 H6 SING N N 48
0GO C5 H7 SING N N 49
0GO C6 H8 SING N N 50
0GO C6 H9 SING N N 51
0GO C7 H10 SING N N 52
0GO C7 H11 SING N N 53
0GO C11 H12 SING N N 54
0GO N13 H13 SING N N 55
0GO C15 H14 SING N N 56
0GO C15 H15 SING N N 57
0GO C16 H16 SING N N 58
0GO C16 H17 SING N N 59
0GO C17 H18 SING N N 60
0GO C17 H19 SING N N 61
0GO C17 H20 SING N N 62
0GO C18 H21 SING N N 63
0GO C18 H22 SING N N 64
0GO C18 H23 SING N N 65
0GO C19 H24 SING N N 66
0GO C20 H25 SING N N 67
0GO C21 H26 SING N N 68
0GO C21 H27 SING N N 69
0GO N22 H28 SING N N 70
0GO C23 H30 SING N N 71
0GO C23 H31 SING N N 72
0GO C24 H32 SING N N 73
0GO C24 H33 SING N N 74
0GO C26 H34 SING N N 75
0GO C27 H35 SING N N 76
0GO C28 H36 SING N N 77
0GO C29 H37 SING N N 78
0GO C30 H38 SING N N 79
0GO O31 H39 SING N N 80
0GO C33 H40 SING N N 81
0GO C34 H41 SING N N 82
0GO C35 H42 SING N N 83
0GO C37 H43 SING N N 84
0GO C38 H44 SING N N 85
0GO C39 H45 SING N N 86
0GO C39 H46 SING N N 87
0GO C39 H47 SING N N 88
0GO C40 H48 SING N N 89
0GO C40 H49 SING N N 90
0GO C40 H50 SING N N 91
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0GO SMILES ACDLabs 12.01 O=C(NC(Cc1ccccc1)C(O)CNCc2cccc(c2)C(C)C)C(N4C(=O)C3(N(CCC3)CCC)CC4)C
0GO InChI InChI 1.03 InChI=1S/C33H48N4O3/c1-5-17-36-18-10-15-33(36)16-19-37(32(33)40)25(4)31(39)35-29(21-26-11-7-6-8-12-26)30(38)23-34-22-27-13-9-14-28(20-27)24(2)3/h6-9,11-14,20,24-25,29-30,34,38H,5,10,15-19,21-23H2,1-4H3,(H,35,39)/t25-,29-,30+,33-/m0/s1
0GO InChIKey InChI 1.03 MOXAMLWWFJKUEH-XGZLTPBASA-N
0GO SMILES_CANONICAL CACTVS 3.370 CCCN1CCC[C@@]12CCN([C@@H](C)C(=O)N[C@@H](Cc3ccccc3)[C@H](O)CNCc4cccc(c4)C(C)C)C2=O
0GO SMILES CACTVS 3.370 CCCN1CCC[C]12CCN([CH](C)C(=O)N[CH](Cc3ccccc3)[CH](O)CNCc4cccc(c4)C(C)C)C2=O
0GO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CCCN1CCC[C@@]12CCN(C2=O)[C@@H](C)C(=O)N[C@@H](Cc3ccccc3)[C@@H](CNCc4cccc(c4)C(C)C)O
0GO SMILES "OpenEye OEToolkits" 1.7.6 CCCN1CCCC12CCN(C2=O)C(C)C(=O)NC(Cc3ccccc3)C(CNCc4cccc(c4)C(C)C)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0GO "SYSTEMATIC NAME" ACDLabs 12.01 (2S)-N-[(2S,3R)-3-hydroxy-1-phenyl-4-{[3-(propan-2-yl)benzyl]amino}butan-2-yl]-2-[(5S)-6-oxo-1-propyl-1,7-diazaspiro[4.4]non-7-yl]propanamide
0GO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2S)-2-[(5S)-6-oxidanylidene-1-propyl-1,7-diazaspiro[4.4]nonan-7-yl]-N-[(2S,3R)-3-oxidanyl-1-phenyl-4-[(3-propan-2-ylphenyl)methylamino]butan-2-yl]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0GO 'Create component' 2012-01-11 RCSB
0GO 'Initial release' 2012-11-16 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0GO N1 N 13.509 -7.713 1
0GO C2 C 12.295 -6.831 2
0GO C3 C 11.082 -7.713 3
0GO C4 C 11.545 -9.139 4
0GO C5 C 13.045 -9.139 5
0GO C6 C 13.509 -5.949 6
0GO C7 C 13.045 -4.523 7
0GO N8 N 11.545 -4.523 8
0GO C9 C 11.082 -5.949 9
0GO O10 O 9.655 -6.413 10
0GO C11 C 10.664 -3.309 11
0GO C12 C 11.274 -1.939 12
0GO N13 N 10.392 -0.726 13
0GO O14 O 12.765 -1.782 14
0GO C15 C 14.935 -7.249 15
0GO C16 C 16.050 -8.253 16
0GO C17 C 17.477 -7.790 17
0GO C18 C 9.172 -3.466 18
0GO C19 C 11.002 0.645 19
0GO C20 C 10.120 1.858 20
0GO C21 C 8.629 1.702 21
0GO N22 N 7.747 2.915 22
0GO C23 C 6.255 2.758 23
0GO C24 C 12.494 0.802 24
0GO C25 C 13.104 2.172 25
0GO C26 C 12.222 3.385 26
0GO C27 C 12.832 4.756 27
0GO C28 C 14.324 4.912 28
0GO C29 C 15.206 3.699 29
0GO C30 C 14.596 2.329 30
0GO O31 O 10.730 3.229 31
0GO C32 C 5.373 3.972 32
0GO C33 C 3.882 3.815 33
0GO C34 C 3.000 5.029 34
0GO C35 C 3.610 6.399 35
0GO C36 C 5.102 6.556 36
0GO C37 C 5.984 5.342 37
0GO C38 C 5.712 7.926 38
0GO C39 C 7.204 8.083 39
0GO C40 C 4.830 9.139 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0GO O10 C9 DOUBLE NONE 1
0GO C11 C18 SINGLE BEGINWEDGE 2
0GO C3 C4 SINGLE NONE 3
0GO C2 C3 SINGLE BEGINWEDGE 4
0GO C9 C2 SINGLE NONE 5
0GO C9 N8 SINGLE NONE 6
0GO C4 C5 SINGLE NONE 7
0GO C11 N8 SINGLE NONE 8
0GO C11 C12 SINGLE NONE 9
0GO C5 N1 SINGLE NONE 10
0GO C2 N1 SINGLE NONE 11
0GO C2 C6 SINGLE NONE 12
0GO N8 C7 SINGLE NONE 13
0GO N1 C15 SINGLE NONE 14
0GO C23 N22 SINGLE NONE 15
0GO C23 C32 SINGLE NONE 16
0GO C12 O14 DOUBLE NONE 17
0GO C12 N13 SINGLE NONE 18
0GO C33 C32 DOUBLE NONE 19
0GO C33 C34 SINGLE NONE 20
0GO C16 C15 SINGLE NONE 21
0GO C16 C17 SINGLE NONE 22
0GO N22 C21 SINGLE NONE 23
0GO C7 C6 SINGLE NONE 24
0GO C21 C20 SINGLE NONE 25
0GO C32 C37 SINGLE NONE 26
0GO N13 C19 SINGLE NONE 27
0GO C34 C35 DOUBLE NONE 28
0GO C20 C19 SINGLE NONE 29
0GO C20 O31 SINGLE BEGINWEDGE 30
0GO C37 C36 DOUBLE NONE 31
0GO C19 C24 SINGLE BEGINDASH 32
0GO C35 C36 SINGLE NONE 33
0GO C36 C38 SINGLE NONE 34
0GO C24 C25 SINGLE NONE 35
0GO C25 C30 SINGLE NONE 36
0GO C25 C26 DOUBLE NONE 37
0GO C30 C29 DOUBLE NONE 38
0GO C26 C27 SINGLE NONE 39
0GO C29 C28 SINGLE NONE 40
0GO C38 C40 SINGLE NONE 41
0GO C38 C39 SINGLE NONE 42
0GO C27 C28 DOUBLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0GO MurckoScaffold S1 scaffold 'O=C(CN1CC[C@@]2(CCCN2)C1=O)N[C@H](CCNCc1ccccc1)Cc1ccccc1' InChI=1S/C26H34N4O2/c31-24(20-30-17-14-26(25(30)32)13-7-15-28-26)29-23(18-21-8-3-1-4-9-21)12-16-27-19-22-10-5-2-6-11-22/h1-6,8-11,23,27-28H,7,12-20H2,(H,29,31)/t23-,26+/m1/s1 LTWWDBONMBOJQH-BVAGGSTKSA-N
0GO amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
0GO peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
0GO phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0GO N1 S1 1
0GO C2 S1 1
0GO C3 S1 1
0GO C4 S1 1
0GO C5 S1 1
0GO C6 S1 1
0GO C7 S1 1
0GO N8 S1 1
0GO C9 S1 1
0GO O10 S1 1
0GO C11 S1 1
0GO C12 S1 1
0GO N13 S1 1
0GO O14 S1 1
0GO C19 S1 1
0GO C20 S1 1
0GO C21 S1 1
0GO N22 S1 1
0GO C23 S1 1
0GO C24 S1 1
0GO C25 S1 1
0GO C26 S1 1
0GO C27 S1 1
0GO C28 S1 1
0GO C29 S1 1
0GO C30 S1 1
0GO C32 S1 1
0GO C33 S1 1
0GO C34 S1 1
0GO C35 S1 1
0GO C36 S1 1
0GO C37 S1 1
0GO N8 F1 1
0GO C9 F1 1
0GO O10 F1 1
0GO C2 F1 1
0GO N13 F1 2
0GO C12 F1 2
0GO O14 F1 2
0GO C11 F1 2
0GO O10 F2 1
0GO C9 F2 1
0GO C2 F2 1
0GO N1 F2 1
0GO O14 F2 2
0GO C12 F2 2
0GO C11 F2 2
0GO N8 F2 2
0GO C25 F3 1
0GO C30 F3 1
0GO C29 F3 1
0GO C28 F3 1
0GO C27 F3 1
0GO C26 F3 1
0GO C32 F3 2
0GO C33 F3 2
0GO C34 F3 2
0GO C35 F3 2
0GO C36 F3 2
0GO C37 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 0GO
_pdbe_chem_comp_rdkit_properties.exactmw 548.373
_pdbe_chem_comp_rdkit_properties.amw 548.772
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 88
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.576
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 307.519
_pdbe_chem_comp_rdkit_properties.tpsa 84.910
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.689
_pdbe_chem_comp_rdkit_properties.CrippenMR 159.144
_pdbe_chem_comp_rdkit_properties.chi0v 19.514
_pdbe_chem_comp_rdkit_properties.chi1v 10.348
_pdbe_chem_comp_rdkit_properties.chi2v 4.574
_pdbe_chem_comp_rdkit_properties.chi3v 4.574
_pdbe_chem_comp_rdkit_properties.chi4v 2.807
_pdbe_chem_comp_rdkit_properties.chi0n 67.514
_pdbe_chem_comp_rdkit_properties.chi1n 34.151
_pdbe_chem_comp_rdkit_properties.chi2n 4.574
_pdbe_chem_comp_rdkit_properties.chi3n 4.574
_pdbe_chem_comp_rdkit_properties.chi4n 2.807
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.740
_pdbe_chem_comp_rdkit_properties.kappa1 6.289
_pdbe_chem_comp_rdkit_properties.kappa2 13.750
_pdbe_chem_comp_rdkit_properties.kappa3 6.933
_pdbe_chem_comp_rdkit_properties.Phi 2.162
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0GO UniChem ChEMBL CHEMBL2047887
0GO UniChem PDBe 0GO
0GO UniChem ZINC ZINC000084671088
0GO UniChem SureChEMBL SCHEMBL3539817
0GO UniChem BindingDb 50386524
0GO UniChem PubChem 66575075
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0GO N1 2.200 2.182 0.114 ETKDGv3 1
0GO C2 2.850 0.981 0.684 ETKDGv3 2
0GO C3 4.104 1.488 1.397 ETKDGv3 3
0GO C4 4.513 2.721 0.614 ETKDGv3 4
0GO C5 3.273 3.148 -0.169 ETKDGv3 5
0GO C6 1.893 0.221 1.632 ETKDGv3 6
0GO C7 1.546 -1.116 0.952 ETKDGv3 7
0GO N8 2.434 -1.246 -0.197 ETKDGv3 8
0GO C9 3.188 -0.055 -0.340 ETKDGv3 9
0GO O10 4.024 0.120 -1.268 ETKDGv3 10
0GO C11 2.214 -2.187 -1.303 ETKDGv3 11
0GO C12 1.019 -1.748 -2.117 ETKDGv3 12
0GO N13 -0.320 -2.145 -1.771 ETKDGv3 13
0GO O14 1.208 -0.952 -3.077 ETKDGv3 14
0GO C15 1.308 1.941 -1.044 ETKDGv3 15
0GO C16 0.366 3.131 -1.257 ETKDGv3 16
0GO C17 -0.528 2.919 -2.475 ETKDGv3 17
0GO C18 2.111 -3.630 -0.793 ETKDGv3 18
0GO C19 -1.502 -1.592 -2.447 ETKDGv3 19
0GO C20 -2.784 -1.810 -1.597 ETKDGv3 20
0GO C21 -2.711 -1.154 -0.203 ETKDGv3 21
0GO N22 -2.637 0.312 -0.314 ETKDGv3 22
0GO C23 -3.221 1.002 0.848 ETKDGv3 23
0GO C24 -1.637 -2.197 -3.867 ETKDGv3 24
0GO C25 -1.733 -3.704 -3.862 ETKDGv3 25
0GO C26 -2.929 -4.320 -3.852 ETKDGv3 26
0GO C27 -3.008 -5.795 -3.813 ETKDGv3 27
0GO C28 -1.888 -6.527 -3.786 ETKDGv3 28
0GO C29 -0.570 -5.860 -3.801 ETKDGv3 29
0GO C30 -0.495 -4.524 -3.841 ETKDGv3 30
0GO O31 -3.899 -1.303 -2.288 ETKDGv3 31
0GO C32 -2.282 1.043 2.032 ETKDGv3 32
0GO C33 -2.140 -0.023 2.837 ETKDGv3 33
0GO C34 -1.249 0.041 4.010 ETKDGv3 34
0GO C35 -0.599 1.174 4.301 ETKDGv3 35
0GO C36 -0.758 2.374 3.441 ETKDGv3 36
0GO C37 -1.541 2.293 2.345 ETKDGv3 37
0GO C38 -0.033 3.654 3.810 ETKDGv3 38
0GO C39 1.042 4.004 2.776 ETKDGv3 39
0GO C40 -1.011 4.820 4.006 ETKDGv3 40
0GO H2 4.920 0.732 1.431 ETKDGv3 41
0GO H3 3.863 1.797 2.439 ETKDGv3 42
0GO H4 5.338 2.467 -0.087 ETKDGv3 43
0GO H5 4.856 3.529 1.297 ETKDGv3 44
0GO H6 2.948 4.159 0.160 ETKDGv3 45
0GO H7 3.522 3.194 -1.253 ETKDGv3 46
0GO H8 0.968 0.804 1.821 ETKDGv3 47
0GO H9 2.371 0.009 2.614 ETKDGv3 48
0GO H10 1.696 -1.965 1.652 ETKDGv3 49
0GO H11 0.489 -1.094 0.618 ETKDGv3 50
0GO H12 3.101 -2.168 -1.974 ETKDGv3 51
0GO H13 -0.463 -2.842 -1.008 ETKDGv3 52
0GO H14 1.897 1.753 -1.970 ETKDGv3 53
0GO H15 0.682 1.044 -0.855 ETKDGv3 54
0GO H16 -0.272 3.261 -0.358 ETKDGv3 55
0GO H17 0.954 4.061 -1.408 ETKDGv3 56
0GO H18 0.089 2.811 -3.392 ETKDGv3 57
0GO H19 -1.153 2.011 -2.346 ETKDGv3 58
0GO H20 -1.200 3.794 -2.599 ETKDGv3 59
0GO H21 1.884 -4.319 -1.635 ETKDGv3 60
0GO H22 3.081 -3.934 -0.346 ETKDGv3 61
0GO H23 1.330 -3.741 -0.014 ETKDGv3 62
0GO H24 -1.362 -0.496 -2.568 ETKDGv3 63
0GO H25 -2.912 -2.907 -1.440 ETKDGv3 64
0GO H26 -3.624 -1.468 0.351 ETKDGv3 65
0GO H27 -1.841 -1.542 0.367 ETKDGv3 66
0GO H28 -1.634 0.594 -0.412 ETKDGv3 67
0GO H30 -3.464 2.042 0.540 ETKDGv3 68
0GO H31 -4.194 0.549 1.141 ETKDGv3 69
0GO H32 -0.759 -1.899 -4.479 ETKDGv3 70
0GO H33 -2.518 -1.758 -4.384 ETKDGv3 71
0GO H34 -3.847 -3.746 -3.863 ETKDGv3 72
0GO H35 -3.975 -6.282 -3.802 ETKDGv3 73
0GO H36 -1.945 -7.607 -3.754 ETKDGv3 74
0GO H37 0.334 -6.455 -3.785 ETKDGv3 75
0GO H38 0.476 -4.045 -3.861 ETKDGv3 76
0GO H39 -4.702 -1.745 -1.907 ETKDGv3 77
0GO H40 -2.689 -0.937 2.650 ETKDGv3 78
0GO H41 -1.129 -0.829 4.642 ETKDGv3 79
0GO H42 0.047 1.207 5.169 ETKDGv3 80
0GO H43 -1.662 3.150 1.696 ETKDGv3 81
0GO H44 0.488 3.506 4.782 ETKDGv3 82
0GO H45 1.765 3.167 2.689 ETKDGv3 83
0GO H46 0.591 4.200 1.780 ETKDGv3 84
0GO H47 1.600 4.909 3.095 ETKDGv3 85
0GO H48 -1.794 4.540 4.743 ETKDGv3 86
0GO H49 -1.500 5.100 3.049 ETKDGv3 87
0GO H50 -0.470 5.708 4.396 ETKDGv3 88
#