data_0GY
#
_chem_comp.id 0GY
_chem_comp.name "(1E,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H6 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-01-13
_chem_comp.pdbx_modified_date 2012-01-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 202.118
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0GY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4D95
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0GY C2 C2 C 0 1 N N N N N N 22.195 8.466 -4.176 -2.013 -1.643 0.051 C2 0GY 1
0GY C3 C3 C 0 1 N N N N N N 23.472 8.414 -4.910 -2.113 -0.180 -0.006 C3 0GY 2
0GY C4 C4 C 0 1 N N N N N N 23.575 7.874 -6.134 -1.004 0.570 -0.267 C4 0GY 3
0GY C5 C5 C 0 1 N N N N N N 22.451 7.125 -6.744 0.260 -0.086 -0.608 C5 0GY 4
0GY C6 C6 C 0 1 N N N N N N 21.271 7.706 -7.045 1.321 0.010 0.231 C6 0GY 5
0GY O6B O6B O 0 1 N N N N N N 19.016 7.196 -7.364 3.681 -0.454 0.668 O6B 0GY 6
0GY C6A C6A C 0 1 N N N N N N 20.204 6.914 -7.646 2.626 -0.550 -0.165 C6A 0GY 7
0GY O6A O6A O 0 1 N N N N N N 20.508 5.979 -8.426 2.751 -1.098 -1.242 O6A 0GY 8
0GY O6 O6 O 0 1 N N N N N N 21.040 8.997 -6.815 1.182 0.621 1.433 O6 0GY 9
0GY C4A C4A C 0 1 N N N N N N 24.846 8.040 -6.848 -1.079 2.049 -0.206 C4A 0GY 10
0GY O4A O4A O 0 1 N N N N N N 25.552 9.052 -6.604 0.037 2.787 -0.367 O4A 0GY 11
0GY O4B O4B O 0 1 N N N N N N 25.205 7.164 -7.663 -2.145 2.596 -0.011 O4B 0GY 12
0GY O2 O2 O 0 1 N N N N N N 22.120 9.222 -3.194 -3.086 -2.379 0.408 O2 0GY 13
0GY O1 O1 O 0 1 N N N N N N 21.234 7.754 -4.533 -0.965 -2.192 -0.227 O1 0GY 14
0GY H1 H1 H 0 1 N N N N N N 24.356 8.825 -4.446 -3.065 0.303 0.158 H1 0GY 15
0GY H2 H2 H 0 1 N N N N N N 22.581 6.074 -6.956 0.346 -0.647 -1.527 H2 0GY 16
0GY H3 H3 H 0 1 N N N N N N 18.432 6.605 -7.824 4.516 -0.836 0.365 H3 0GY 17
0GY H4 H4 H 0 1 N N N N N N 21.002 9.150 -5.878 1.993 0.641 1.960 H4 0GY 18
0GY H5 H5 H 0 1 N N N N N N 26.347 9.017 -7.123 -0.062 3.748 -0.319 H5 0GY 19
0GY H6 H6 H 0 1 N N N N N N 21.256 9.152 -2.805 -2.971 -3.339 0.432 H6 0GY 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0GY O6A C6A DOUB N N 1
0GY O4B C4A DOUB N N 2
0GY C6A O6B SING N N 3
0GY C6A C6 SING N N 4
0GY C6 O6 SING N N 5
0GY C6 C5 DOUB N Z 6
0GY C4A O4A SING N N 7
0GY C4A C4 SING N N 8
0GY C5 C4 SING N N 9
0GY C4 C3 DOUB N E 10
0GY C3 C2 SING N N 11
0GY O1 C2 DOUB N N 12
0GY C2 O2 SING N N 13
0GY C3 H1 SING N N 14
0GY C5 H2 SING N N 15
0GY O6B H3 SING N N 16
0GY O6 H4 SING N N 17
0GY O4A H5 SING N N 18
0GY O2 H6 SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0GY SMILES ACDLabs 12.01 O=C(O)C(\O)=C\C(\C(=O)O)=C/C(=O)O
0GY InChI InChI 1.03 InChI=1S/C7H6O7/c8-4(7(13)14)1-3(6(11)12)2-5(9)10/h1-2,8H,(H,9,10)(H,11,12)(H,13,14)/b3-2+,4-1-
0GY InChIKey InChI 1.03 QWLUKZXOQAQUFQ-NAOWAUKJSA-N
0GY SMILES_CANONICAL CACTVS 3.370 OC(=O)\C=C(/C=C(O)/C(O)=O)C(O)=O
0GY SMILES CACTVS 3.370 OC(=O)C=C(C=C(O)C(O)=O)C(O)=O
0GY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C(=C(\C=C(\C(=O)O)/O)/C(=O)O)\C(=O)O
0GY SMILES "OpenEye OEToolkits" 1.7.6 C(=C(C=C(C(=O)O)O)C(=O)O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0GY "SYSTEMATIC NAME" ACDLabs 12.01 "(1E,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylic acid"
0GY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1E,3Z)-4-oxidanylbuta-1,3-diene-1,2,4-tricarboxylic acid"
#
_pdbx_chem_comp_audit.comp_id 0GY
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2012-01-13
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0GY C2 C 4.299 1.875 1
0GY C3 C 4.299 0.375 2
0GY C4 C 5.598 -0.375 3
0GY C5 C 6.897 0.375 4
0GY C6 C 8.196 -0.375 5
0GY O6B O 9.495 1.875 6
0GY C6A C 9.495 0.375 7
0GY O6A O 10.794 -0.375 8
0GY O6 O 8.196 -1.875 9
0GY C4A C 5.598 -1.875 10
0GY O4A O 6.897 -2.625 11
0GY O4B O 4.299 -2.625 12
0GY O2 O 5.598 2.625 13
0GY O1 O 3.000 2.625 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0GY O6A C6A DOUBLE NONE 1
0GY O4B C4A DOUBLE NONE 2
0GY C6A O6B SINGLE NONE 3
0GY C6A C6 SINGLE ENDUPRIGHT 4
0GY C6 O6 SINGLE ENDUPRIGHT 5
0GY C6 C5 DOUBLE NONE 6
0GY C4A O4A SINGLE NONE 7
0GY C4A C4 SINGLE ENDDOWNRIGHT 8
0GY C5 C4 SINGLE ENDUPRIGHT 9
0GY C4 C3 DOUBLE NONE 10
0GY C3 C2 SINGLE ENDDOWNRIGHT 11
0GY O1 C2 DOUBLE NONE 12
0GY C2 O2 SINGLE NONE 13
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id 0GY
_pdbe_chem_comp_rdkit_properties.exactmw 202.011
_pdbe_chem_comp_rdkit_properties.amw 202.118
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 85.988
_pdbe_chem_comp_rdkit_properties.tpsa 132.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.391
_pdbe_chem_comp_rdkit_properties.CrippenMR 41.702
_pdbe_chem_comp_rdkit_properties.chi0v 6.358
_pdbe_chem_comp_rdkit_properties.chi1v 2.929
_pdbe_chem_comp_rdkit_properties.chi2v 0.855
_pdbe_chem_comp_rdkit_properties.chi3v 0.855
_pdbe_chem_comp_rdkit_properties.chi4v 0.400
_pdbe_chem_comp_rdkit_properties.chi0n 12.358
_pdbe_chem_comp_rdkit_properties.chi1n 5.562
_pdbe_chem_comp_rdkit_properties.chi2n 0.855
_pdbe_chem_comp_rdkit_properties.chi3n 0.855
_pdbe_chem_comp_rdkit_properties.chi4n 0.400
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.310
_pdbe_chem_comp_rdkit_properties.kappa1 4.796
_pdbe_chem_comp_rdkit_properties.kappa2 4.651
_pdbe_chem_comp_rdkit_properties.kappa3 3.904
_pdbe_chem_comp_rdkit_properties.Phi 1.593
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0GY UniChem PDBe 0GY
0GY UniChem ChEBI 61493
0GY UniChem ZINC ZINC000100085022
0GY UniChem SureChEMBL SCHEMBL19386132
0GY UniChem PubChem 54692812
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0GY C2 -1.728 1.899 0.414 ETKDGv3 1
0GY C3 -1.869 0.513 -0.083 ETKDGv3 2
0GY C4 -0.855 -0.329 -0.378 ETKDGv3 3
0GY C5 0.557 0.123 -0.360 ETKDGv3 4
0GY C6 1.519 -0.532 0.308 ETKDGv3 5
0GY O6B 3.262 1.091 -0.439 ETKDGv3 6
0GY C6A 2.916 -0.046 0.286 ETKDGv3 7
0GY O6A 3.807 -0.664 0.929 ETKDGv3 8
0GY O6 1.195 -1.673 1.045 ETKDGv3 9
0GY C4A -1.164 -1.709 -0.830 ETKDGv3 10
0GY O4A -2.446 -2.232 -0.685 ETKDGv3 11
0GY O4B -0.266 -2.418 -1.359 ETKDGv3 12
0GY O2 -2.860 2.704 0.486 ETKDGv3 13
0GY O1 -0.619 2.354 0.805 ETKDGv3 14
0GY H1 -2.889 0.167 -0.200 ETKDGv3 15
0GY H2 0.795 1.039 -0.888 ETKDGv3 16
0GY H3 4.218 1.427 -0.456 ETKDGv3 17
0GY H4 1.892 -2.192 1.565 ETKDGv3 18
0GY H5 -2.663 -3.172 -0.994 ETKDGv3 19
0GY H6 -2.801 3.654 0.834 ETKDGv3 20
#