data_0HY
#
_chem_comp.id 0HY
_chem_comp.name "methyl (3R)-3-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)butanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H13 N5 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-03-19
_chem_comp.pdbx_modified_date 2012-03-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 279.252
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0HY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4D8A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0HY O1 O1 O 0 1 N N N N N N -14.212 27.674 3.701 2.969 -2.408 0.247 O1 0HY 1
0HY N1 N1 N 0 1 N N N N N N -16.486 23.528 2.350 5.641 1.314 0.002 N1 0HY 2
0HY C1 C1 C 0 1 N N N N N N -13.839 25.605 4.993 1.906 -0.333 0.063 C1 0HY 3
0HY C2 C2 C 0 1 N N N N N N -14.476 26.339 3.919 3.081 -1.199 0.152 C2 0HY 4
0HY N2 N2 N 0 1 N N N N N N -14.977 23.586 4.289 3.346 1.539 -0.055 N2 0HY 5
0HY C3 C3 C 0 1 N N N N N N -12.903 25.991 9.874 -4.297 0.212 0.133 C3 0HY 6
0HY N3 N3 N 0 1 N N N N N N -12.623 24.053 7.081 -0.279 1.344 -0.119 N3 0HY 7
0HY C4 C4 C 0 1 N N N N N N -12.303 25.306 7.047 -0.497 0.066 -0.022 C4 0HY 8
0HY C5 C5 C 0 1 N N N N N N -14.566 26.413 11.341 -6.657 0.507 0.296 C5 0HY 9
0HY C6 C6 C 0 1 N N N N N N -14.131 24.269 5.114 2.102 1.056 -0.044 C6 0HY 10
0HY C7 C7 C 0 1 N N N N N N -12.877 26.178 5.997 0.589 -0.847 0.076 C7 0HY 11
0HY C8 C8 C 0 1 N N N N N N -11.732 26.612 9.181 -2.887 0.727 -0.001 C8 0HY 12
0HY N4 N4 N 0 1 N N N N N N -13.485 23.559 6.171 1.014 1.876 -0.133 N4 0HY 13
0HY C9 C9 C 0 1 N N N N N N -15.622 24.237 3.231 4.395 0.749 0.020 C9 0HY 14
0HY C10 C10 C 0 1 N N N N N N -10.287 24.777 8.377 -2.154 -1.302 -1.260 C10 0HY 15
0HY N5 N5 N 0 1 N N N N N N -15.357 25.670 3.051 4.297 -0.604 0.126 N5 0HY 16
0HY O2 O2 O 0 1 N N N N N N -12.807 24.856 10.417 -4.502 -0.976 0.212 O2 0HY 17
0HY O3 O3 O 0 1 N N N N N N -13.833 26.752 10.228 -5.326 1.073 0.165 O3 0HY 18
0HY C11 C11 C 0 1 N N R N N N -11.238 25.866 7.974 -1.913 -0.452 -0.011 C11 0HY 19
0HY O4 O4 O 0 1 N N N N N N -12.568 27.511 6.001 0.388 -2.048 0.167 O4 0HY 20
0HY H1 H1 H 0 1 N N N N N N -16.640 22.549 2.482 5.736 2.277 -0.065 H1 0HY 21
0HY H2 H2 H 0 1 N N N N N N -16.939 24.009 1.599 6.429 0.752 0.061 H2 0HY 22
0HY H3 H3 H 0 1 N N N N N N -15.338 27.176 11.518 -7.394 1.309 0.308 H3 0HY 23
0HY H4 H4 H 0 1 N N N N N N -15.046 25.436 11.180 -6.854 -0.155 -0.548 H4 0HY 24
0HY H5 H5 H 0 1 N N N N N N -13.900 26.355 12.215 -6.720 -0.060 1.225 H5 0HY 25
0HY H6 H6 H 0 1 N N N N N N -10.905 26.679 9.903 -2.792 1.286 -0.932 H6 0HY 26
0HY H7 H7 H 0 1 N N N N N N -12.022 27.624 8.861 -2.658 1.381 0.840 H7 0HY 27
0HY H8 H8 H 0 1 N N N N N N -9.519 25.190 9.048 -3.177 -1.677 -1.253 H8 0HY 28
0HY H9 H9 H 0 1 N N N N N N -10.840 23.982 8.898 -1.996 -0.693 -2.151 H9 0HY 29
0HY H10 H10 H 0 1 N N N N N N -9.805 24.361 7.480 -1.459 -2.142 -1.268 H10 0HY 30
0HY H11 H11 H 0 1 N N N N N N -15.804 26.171 2.310 5.101 -1.145 0.179 H11 0HY 31
0HY H12 H12 H 0 1 N N N N N N -10.656 26.585 7.378 -2.070 -1.062 0.879 H12 0HY 32
0HY H14 H14 H 0 1 N N N N N N -13.696 22.584 6.244 1.139 2.835 -0.207 H14 0HY 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0HY N1 C9 SING N N 1
0HY N5 C9 SING N N 2
0HY N5 C2 SING N N 3
0HY C9 N2 DOUB N N 4
0HY O1 C2 DOUB N N 5
0HY C2 C1 SING N N 6
0HY N2 C6 SING N N 7
0HY C1 C6 DOUB N N 8
0HY C1 C7 SING N N 9
0HY C6 N4 SING N N 10
0HY C7 O4 DOUB N N 11
0HY C7 C4 SING N N 12
0HY N4 N3 SING N N 13
0HY C4 N3 DOUB N N 14
0HY C4 C11 SING N N 15
0HY C11 C10 SING N N 16
0HY C11 C8 SING N N 17
0HY C8 C3 SING N N 18
0HY C3 O3 SING N N 19
0HY C3 O2 DOUB N N 20
0HY O3 C5 SING N N 21
0HY N1 H1 SING N N 22
0HY N1 H2 SING N N 23
0HY C5 H3 SING N N 24
0HY C5 H4 SING N N 25
0HY C5 H5 SING N N 26
0HY C8 H6 SING N N 27
0HY C8 H7 SING N N 28
0HY C10 H8 SING N N 29
0HY C10 H9 SING N N 30
0HY C10 H10 SING N N 31
0HY N5 H11 SING N N 32
0HY C11 H12 SING N N 33
0HY N4 H14 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0HY SMILES ACDLabs 12.01 O=C(OC)CC(C1=NNC=2N=C(NC(=O)C=2C1=O)N)C
0HY InChI InChI 1.03 InChI=1S/C11H13N5O4/c1-4(3-5(17)20-2)7-8(18)6-9(16-15-7)13-11(12)14-10(6)19/h4H,3H2,1-2H3,(H4,12,13,14,16,18,19)/t4-/m1/s1
0HY InChIKey InChI 1.03 JEWNFTGWEYCQGA-SCSAIBSYSA-N
0HY SMILES_CANONICAL CACTVS 3.370 COC(=O)C[C@@H](C)C1=NNC2=C(C(=O)NC(=N2)N)C1=O
0HY SMILES CACTVS 3.370 COC(=O)C[CH](C)C1=NNC2=C(C(=O)NC(=N2)N)C1=O
0HY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@H](CC(=O)OC)C1=NNC2=C(C1=O)C(=O)NC(=N2)N
0HY SMILES "OpenEye OEToolkits" 1.7.6 CC(CC(=O)OC)C1=NNC2=C(C1=O)C(=O)NC(=N2)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0HY "SYSTEMATIC NAME" ACDLabs 12.01 "methyl (3R)-3-(7-amino-4,5-dioxo-1,4,5,6-tetrahydropyrimido[4,5-c]pyridazin-3-yl)butanoate"
0HY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "methyl (3R)-3-[7-azanyl-4,5-bis(oxidanylidene)-1,6-dihydropyrimido[4,5-c]pyridazin-3-yl]butanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0HY 'Create component' 2012-03-19 RCSB
0HY 'Other modification' 2012-03-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0HY O1 O 13.417 2.767 1
0HY N1 N 16.089 -1.821 2
0HY C1 C 12.093 0.465 3
0HY C2 C 13.434 1.267 4
0HY N2 N 13.434 -1.837 5
0HY C3 C 5.598 1.215 6
0HY N3 N 9.495 -1.035 7
0HY C4 C 9.495 0.465 8
0HY C5 C 3.000 1.215 9
0HY C6 C 12.093 -1.035 10
0HY C7 C 10.794 1.215 11
0HY C8 C 6.897 0.465 12
0HY N4 N 10.794 -1.785 13
0HY C9 C 14.793 -1.066 14
0HY C10 C 8.196 2.715 15
0HY N5 N 14.793 0.496 16
0HY O2 O 5.598 2.715 17
0HY O3 O 4.299 0.465 18
0HY C11 C 8.196 1.215 19
0HY O4 O 10.794 2.715 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0HY N1 C9 SINGLE NONE 1
0HY N5 C9 SINGLE NONE 2
0HY N5 C2 SINGLE NONE 3
0HY C9 N2 DOUBLE NONE 4
0HY O1 C2 DOUBLE NONE 5
0HY C2 C1 SINGLE NONE 6
0HY N2 C6 SINGLE NONE 7
0HY C1 C6 DOUBLE NONE 8
0HY C1 C7 SINGLE NONE 9
0HY C6 N4 SINGLE NONE 10
0HY C7 O4 DOUBLE NONE 11
0HY C7 C4 SINGLE NONE 12
0HY N4 N3 SINGLE NONE 13
0HY C4 N3 DOUBLE NONE 14
0HY C4 C11 SINGLE NONE 15
0HY C11 C10 SINGLE BEGINWEDGE 16
0HY C11 C8 SINGLE NONE 17
0HY C8 C3 SINGLE NONE 18
0HY C3 O3 SINGLE NONE 19
0HY C3 O2 DOUBLE NONE 20
0HY O3 C5 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0HY MurckoScaffold S1 scaffold 'O=c1cn[nH]c2nc[nH]c(=O)c12' InChI=1S/C6H4N4O2/c11-3-1-9-10-5-4(3)6(12)8-2-7-5/h1-2H,(H2,7,8,10,11,12) FHYPSXUQHFTKQX-UHFFFAOYSA-N
0HY pyridazine F1 fragment c1ccnnc1 InChI=1S/C4H4N2/c1-2-4-6-5-3-1/h1-4H PBMFSQRYOILNGV-UHFFFAOYSA-N
0HY pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0HY O1 S1 1
0HY C1 S1 1
0HY C2 S1 1
0HY N2 S1 1
0HY N3 S1 1
0HY C4 S1 1
0HY C6 S1 1
0HY C7 S1 1
0HY N4 S1 1
0HY C9 S1 1
0HY N5 S1 1
0HY O4 S1 1
0HY C1 F1 1
0HY C6 F1 1
0HY N4 F1 1
0HY N3 F1 1
0HY C4 F1 1
0HY C7 F1 1
0HY C1 F2 1
0HY C2 F2 1
0HY N5 F2 1
0HY C9 F2 1
0HY N2 F2 1
0HY C6 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0HY
_pdbe_chem_comp_rdkit_properties.exactmw 279.097
_pdbe_chem_comp_rdkit_properties.amw 279.256
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 33
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.364
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 130.220
_pdbe_chem_comp_rdkit_properties.tpsa 143.820
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.191
_pdbe_chem_comp_rdkit_properties.CrippenMR 67.160
_pdbe_chem_comp_rdkit_properties.chi0v 9.369
_pdbe_chem_comp_rdkit_properties.chi1v 4.786
_pdbe_chem_comp_rdkit_properties.chi2v 2.088
_pdbe_chem_comp_rdkit_properties.chi3v 2.088
_pdbe_chem_comp_rdkit_properties.chi4v 1.301
_pdbe_chem_comp_rdkit_properties.chi0n 22.369
_pdbe_chem_comp_rdkit_properties.chi1n 11.075
_pdbe_chem_comp_rdkit_properties.chi2n 2.088
_pdbe_chem_comp_rdkit_properties.chi3n 2.088
_pdbe_chem_comp_rdkit_properties.chi4n 1.301
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.710
_pdbe_chem_comp_rdkit_properties.kappa1 4.686
_pdbe_chem_comp_rdkit_properties.kappa2 5.114
_pdbe_chem_comp_rdkit_properties.kappa3 2.371
_pdbe_chem_comp_rdkit_properties.Phi 1.198
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0HY UniChem PDBe 0HY
0HY UniChem ZINC ZINC000095920572
0HY UniChem PubChem 135566688
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0HY O1 -0.957 2.533 1.534 ETKDGv3 1
0HY N1 -5.476 2.029 -0.023 ETKDGv3 2
0HY C1 -1.513 0.506 0.393 ETKDGv3 3
0HY C2 -1.830 1.841 0.946 ETKDGv3 4
0HY N2 -3.819 0.376 -0.341 ETKDGv3 5
0HY C3 2.672 -0.253 -1.199 ETKDGv3 6
0HY N3 -0.942 -2.049 -0.685 ETKDGv3 7
0HY C4 0.054 -1.455 -0.092 ETKDGv3 8
0HY C5 4.144 1.526 -0.316 ETKDGv3 9
0HY C6 -2.495 -0.175 -0.223 ETKDGv3 10
0HY C7 -0.167 -0.103 0.488 ETKDGv3 11
0HY C8 2.309 -1.707 -1.247 ETKDGv3 12
0HY N4 -2.221 -1.470 -0.774 ETKDGv3 13
0HY C9 -4.142 1.545 0.131 ETKDGv3 14
0HY C10 2.107 -2.118 1.280 ETKDGv3 15
0HY N5 -3.160 2.344 0.803 ETKDGv3 16
0HY O2 1.973 0.588 -1.829 ETKDGv3 17
0HY O3 3.772 0.159 -0.442 ETKDGv3 18
0HY C11 1.400 -2.160 -0.084 ETKDGv3 19
0HY O4 0.772 0.523 1.047 ETKDGv3 20
0HY H1 -5.745 2.965 0.352 ETKDGv3 21
0HY H2 -6.196 1.452 -0.511 ETKDGv3 22
0HY H3 4.386 1.948 -1.314 ETKDGv3 23
0HY H4 3.316 2.104 0.146 ETKDGv3 24
0HY H5 5.041 1.601 0.333 ETKDGv3 25
0HY H6 3.244 -2.308 -1.239 ETKDGv3 26
0HY H7 1.799 -1.922 -2.212 ETKDGv3 27
0HY H8 1.399 -2.403 2.087 ETKDGv3 28
0HY H9 2.948 -2.844 1.287 ETKDGv3 29
0HY H10 2.527 -1.118 1.505 ETKDGv3 30
0HY H11 -3.412 3.283 1.184 ETKDGv3 31
0HY H12 1.196 -3.240 -0.266 ETKDGv3 32
0HY H14 -2.983 -1.996 -1.256 ETKDGv3 33
#