data_0KX
#
_chem_comp.id 0KX
_chem_comp.name "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H17 N4 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-02-06
_chem_comp.pdbx_modified_date 2012-05-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 466.172
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0KX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4DL2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0KX PG PG P 0 1 N N N N N N 54.987 2.589 7.209 5.387 1.955 -0.387 PG 0KX 1
0KX O1G O1G O 0 1 N N N N N N 54.705 1.700 8.382 6.000 1.561 -1.823 O1G 0KX 2
0KX O2G O2G O 0 1 N N N N N N 54.845 1.780 5.983 6.322 1.533 0.680 O2G 0KX 3
0KX O3G O3G O 0 1 N N N N N N 56.356 3.058 7.312 5.173 3.549 -0.314 O3G 0KX 4
0KX PB PB P 0 1 N N N N N N 52.843 4.118 6.233 3.542 -0.277 0.244 PB 0KX 5
0KX O1B O1B O 0 1 N N N N N N 52.211 5.423 6.660 4.144 -1.335 -0.810 O1B 0KX 6
0KX O2B O2B O 0 1 N N N N N N 53.325 4.307 4.871 4.070 -0.572 1.595 O2B 0KX 7
0KX O3B O3B O 0 1 N N N N N N 54.033 3.832 7.233 3.973 1.213 -0.186 O3B 0KX 8
0KX PA PA P 0 1 N N N N N N 51.341 2.051 4.940 1.371 -1.940 0.706 PA 0KX 9
0KX O1A O1A O 0 1 N N N N N N 52.715 1.761 4.122 1.906 -2.926 -0.259 O1A 0KX 10
0KX O2A O2A O 0 1 N N N N N N 50.789 0.631 5.310 1.926 -2.276 2.180 O2A 0KX 11
0KX N3A N3A N 0 1 N N N N N N 51.708 2.890 6.363 1.864 -0.394 0.260 N3A 0KX 12
0KX "O5'" "O5'" O 0 1 N N N N N N 50.357 2.885 4.008 -0.238 -2.011 0.709 "O5'" 0KX 13
0KX "C5'" "C5'" C 0 1 N N N N N N 50.810 3.931 3.182 -1.016 -2.072 -0.487 "C5'" 0KX 14
0KX "C4'" "C4'" C 0 1 N N R N N N 49.955 5.079 3.129 -2.502 -2.129 -0.126 "C4'" 0KX 15
0KX "O4'" "O4'" O 0 1 N N N N N N 48.630 4.631 2.742 -2.935 -0.865 0.422 "O4'" 0KX 16
0KX "C3'" "C3'" C 0 1 N N S N N N 49.803 5.596 4.494 -3.358 -2.322 -1.398 "C3'" 0KX 17
0KX "O3'" "O3'" O 0 1 N N N N N N 50.704 6.549 4.749 -3.715 -3.696 -1.558 "O3'" 0KX 18
0KX "C2'" "C2'" C 0 1 N N N N N N 48.437 6.133 4.527 -4.615 -1.462 -1.139 "C2'" 0KX 19
0KX "C1'" "C1'" C 0 1 N N R N N N 47.687 5.280 3.566 -4.370 -0.852 0.259 "C1'" 0KX 20
0KX N1 N1 N 0 1 N N N N N N 46.849 4.382 4.318 -4.877 0.522 0.312 N1 0KX 21
0KX C2 C2 C 0 1 N N N N N N 45.557 4.671 4.546 -4.356 1.459 -0.502 C2 0KX 22
0KX N3 N3 N 0 1 N N N N N N 44.769 3.840 5.230 -4.797 2.715 -0.475 N3 0KX 23
0KX C4 C4 C 0 1 N N N N N N 45.244 2.679 5.722 -5.765 3.076 0.358 C4 0KX 24
0KX C5 C5 C 0 1 N N N N N N 46.574 2.362 5.497 -6.332 2.118 1.223 C5 0KX 25
0KX C6 C6 C 0 1 N N N N N N 47.377 3.242 4.778 -5.877 0.843 1.180 C6 0KX 26
0KX O2 O2 O 0 1 N N N N N N 45.105 5.657 4.133 -3.464 1.153 -1.276 O2 0KX 27
0KX N4 N4 N 0 1 N N N N N N 44.432 1.819 6.439 -6.212 4.376 0.377 N4 0KX 28
0KX H1 H1 H 0 1 N N N N N N 54.500 0.825 8.075 5.440 1.809 -2.571 H1 0KX 29
0KX H2 H2 H 0 1 N N N N N N 56.856 2.741 6.569 5.986 4.061 -0.428 H2 0KX 30
0KX H3 H3 H 0 1 N N N N N N 52.274 6.053 5.952 3.840 -1.201 -1.718 H3 0KX 31
0KX H4 H4 H 0 1 N N N N N N 51.377 -0.035 4.974 1.615 -1.669 2.865 H4 0KX 32
0KX H5 H5 H 0 1 N N N N N N 50.860 3.295 6.705 1.474 -0.134 -0.634 H5 0KX 33
0KX H6 H6 H 0 1 N N N N N N 50.915 3.537 2.160 -0.823 -1.186 -1.092 H6 0KX 34
0KX H7 H7 H 0 1 N N N N N N 51.794 4.256 3.552 -0.745 -2.964 -1.052 H7 0KX 35
0KX H8 H8 H 0 1 N N N N N N 50.341 5.850 2.446 -2.689 -2.936 0.582 H8 0KX 36
0KX H9 H9 H 0 1 N N N N N N 49.885 4.765 5.210 -2.822 -1.960 -2.277 H9 0KX 37
0KX H10 H10 H 0 1 N N N N N N 50.586 6.868 5.636 -4.253 -3.874 -2.342 H10 0KX 38
0KX H11 H11 H 0 1 N N N N N N 48.424 7.185 4.207 -4.701 -0.676 -1.889 H11 0KX 39
0KX H12 H12 H 0 1 N N N N N N 48.010 6.051 5.537 -5.509 -2.085 -1.135 H12 0KX 40
0KX H13 H13 H 0 1 N N N N N N 47.050 5.931 2.949 -4.845 -1.460 1.029 H13 0KX 41
0KX H14 H14 H 0 1 N N N N N N 46.985 1.438 5.877 -7.121 2.395 1.907 H14 0KX 42
0KX H15 H15 H 0 1 N N N N N N 48.415 3.007 4.593 -6.298 0.090 1.829 H15 0KX 43
0KX H16 H16 H 0 1 N N N N N N 43.474 2.054 6.600 -5.819 5.033 -0.219 H16 0KX 44
0KX H17 H17 H 0 1 N N N N N N 44.803 0.962 6.796 -6.920 4.637 0.987 H17 0KX 45
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0KX "O4'" "C4'" SING N N 1
0KX "O4'" "C1'" SING N N 2
0KX "C4'" "C5'" SING N N 3
0KX "C4'" "C3'" SING N N 4
0KX "C5'" "O5'" SING N N 5
0KX "C1'" N1 SING N N 6
0KX "C1'" "C2'" SING N N 7
0KX "O5'" PA SING N N 8
0KX O1A PA DOUB N N 9
0KX O2 C2 DOUB N N 10
0KX N1 C2 SING N N 11
0KX N1 C6 SING N N 12
0KX "C3'" "C2'" SING N N 13
0KX "C3'" "O3'" SING N N 14
0KX C2 N3 SING N N 15
0KX C6 C5 DOUB N N 16
0KX O2B PB DOUB N N 17
0KX PA O2A SING N N 18
0KX PA N3A SING N N 19
0KX N3 C4 DOUB N N 20
0KX C5 C4 SING N N 21
0KX C4 N4 SING N N 22
0KX O2G PG DOUB N N 23
0KX PB N3A SING N N 24
0KX PB O1B SING N N 25
0KX PB O3B SING N N 26
0KX PG O3B SING N N 27
0KX PG O3G SING N N 28
0KX PG O1G SING N N 29
0KX O1G H1 SING N N 30
0KX O3G H2 SING N N 31
0KX O1B H3 SING N N 32
0KX O2A H4 SING N N 33
0KX N3A H5 SING N N 34
0KX "C5'" H6 SING N N 35
0KX "C5'" H7 SING N N 36
0KX "C4'" H8 SING N N 37
0KX "C3'" H9 SING N N 38
0KX "O3'" H10 SING N N 39
0KX "C2'" H11 SING N N 40
0KX "C2'" H12 SING N N 41
0KX "C1'" H13 SING N N 42
0KX C5 H14 SING N N 43
0KX C6 H15 SING N N 44
0KX N4 H16 SING N N 45
0KX N4 H17 SING N N 46
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0KX SMILES ACDLabs 12.01 O=P(O)(O)OP(=O)(O)NP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CC2O
0KX InChI InChI 1.03 InChI=1S/C9H17N4O12P3/c10-7-1-2-13(9(15)11-7)8-3-5(14)6(24-8)4-23-26(16,17)12-27(18,19)25-28(20,21)22/h1-2,5-6,8,14H,3-4H2,(H2,10,11,15)(H2,20,21,22)(H3,12,16,17,18,19)/t5-,6+,8+/m0/s1
0KX InChIKey InChI 1.03 STYMTWKSQLVXJN-SHYZEUOFSA-N
0KX SMILES_CANONICAL CACTVS 3.370 NC1=NC(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O2
0KX SMILES CACTVS 3.370 NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)O2
0KX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O
0KX SMILES "OpenEye OEToolkits" 1.7.6 C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(NP(=O)(O)OP(=O)(O)O)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0KX "SYSTEMATIC NAME" ACDLabs 12.01 "2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine"
0KX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methoxy-N-[oxidanyl(phosphonooxy)phosphoryl]phosphonamidic acid"
#
_pdbx_chem_comp_audit.comp_id 0KX
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2012-02-06
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0KX PG P 14.309 -5.972 1
0KX O1G O 13.095 -6.853 2
0KX O2G O 15.190 -7.185 3
0KX O3G O 15.522 -5.090 4
0KX PB P 11.935 -4.915 5
0KX O1B O 11.778 -3.423 6
0KX O2B O 12.092 -6.407 7
0KX O3B O 13.427 -4.758 8
0KX PA P 9.562 -3.858 9
0KX O1A O 10.775 -2.977 10
0KX O2A O 8.348 -4.740 11
0KX N3A N 10.444 -5.072 12
0KX "O5'" O 8.680 -2.645 13
0KX "C5'" C 7.188 -2.801 14
0KX "C4'" C 6.307 -1.588 15
0KX "O4'" O 6.770 -0.161 16
0KX "C3'" C 4.807 -1.588 17
0KX "O3'" O 3.925 -2.801 18
0KX "C2'" C 4.343 -0.161 19
0KX "C1'" C 5.557 0.720 20
0KX N1 N 5.557 2.220 21
0KX C2 C 6.856 2.970 22
0KX N3 N 6.856 4.470 23
0KX C4 C 5.557 5.220 24
0KX C5 C 4.258 4.470 25
0KX C6 C 4.258 2.970 26
0KX O2 O 8.155 2.220 27
0KX N4 N 5.557 6.720 28
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0KX "O4'" "C4'" SINGLE NONE 1
0KX "O4'" "C1'" SINGLE NONE 2
0KX "C4'" "C5'" SINGLE BEGINDASH 3
0KX "C4'" "C3'" SINGLE NONE 4
0KX "C5'" "O5'" SINGLE NONE 5
0KX "C1'" N1 SINGLE BEGINDASH 6
0KX "C1'" "C2'" SINGLE NONE 7
0KX "O5'" PA SINGLE NONE 8
0KX O1A PA DOUBLE NONE 9
0KX O2 C2 DOUBLE NONE 10
0KX N1 C2 SINGLE NONE 11
0KX N1 C6 SINGLE NONE 12
0KX "C3'" "C2'" SINGLE NONE 13
0KX "C3'" "O3'" SINGLE BEGINWEDGE 14
0KX C2 N3 SINGLE NONE 15
0KX C6 C5 DOUBLE NONE 16
0KX O2B PB DOUBLE NONE 17
0KX PA O2A SINGLE BEGINDASH 18
0KX PA N3A SINGLE NONE 19
0KX N3 C4 DOUBLE NONE 20
0KX C5 C4 SINGLE NONE 21
0KX C4 N4 SINGLE NONE 22
0KX O2G PG DOUBLE NONE 23
0KX PB N3A SINGLE NONE 24
0KX PB O1B SINGLE BEGINDASH 25
0KX PB O3B SINGLE NONE 26
0KX PG O3B SINGLE NONE 27
0KX PG O3G SINGLE NONE 28
0KX PG O1G SINGLE NONE 29
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0KX MurckoScaffold S1 scaffold 'O=c1ncccn1[C@H]1CCCO1' InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/t7-/m1/s1 AKXKPKRAUWTVBW-SSDOTTSWSA-N
0KX deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
0KX phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
0KX pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0KX "C4'" S1 1
0KX "O4'" S1 1
0KX "C3'" S1 1
0KX "C2'" S1 1
0KX "C1'" S1 1
0KX N1 S1 1
0KX C2 S1 1
0KX N3 S1 1
0KX C4 S1 1
0KX C5 S1 1
0KX C6 S1 1
0KX O2 S1 1
0KX "C1'" F1 1
0KX "C2'" F1 1
0KX "C3'" F1 1
0KX "O3'" F1 1
0KX "C4'" F1 1
0KX "O4'" F1 1
0KX "C5'" F1 1
0KX "O5'" F1 1
0KX O1G F2 1
0KX PG F2 1
0KX O2G F2 1
0KX O3B F2 1
0KX O3G F2 1
0KX C5 F3 1
0KX C6 F3 1
0KX N1 F3 1
0KX C2 F3 1
0KX N3 F3 1
0KX C4 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0KX
_pdbe_chem_comp_rdkit_properties.exactmw 466.006
_pdbe_chem_comp_rdkit_properties.amw 466.173
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 16
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 28
_pdbe_chem_comp_rdkit_properties.NumAtoms 45
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 19
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.556
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 180.343
_pdbe_chem_comp_rdkit_properties.tpsa 252.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.091
_pdbe_chem_comp_rdkit_properties.CrippenMR 88.595
_pdbe_chem_comp_rdkit_properties.chi0v 15.213
_pdbe_chem_comp_rdkit_properties.chi1v 10.539
_pdbe_chem_comp_rdkit_properties.chi2v 5.877
_pdbe_chem_comp_rdkit_properties.chi3v 5.877
_pdbe_chem_comp_rdkit_properties.chi4v 4.199
_pdbe_chem_comp_rdkit_properties.chi0n 29.529
_pdbe_chem_comp_rdkit_properties.chi1n 13.971
_pdbe_chem_comp_rdkit_properties.chi2n 2.177
_pdbe_chem_comp_rdkit_properties.chi3n 2.177
_pdbe_chem_comp_rdkit_properties.chi4n 1.345
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.990
_pdbe_chem_comp_rdkit_properties.kappa1 9.020
_pdbe_chem_comp_rdkit_properties.kappa2 8.400
_pdbe_chem_comp_rdkit_properties.kappa3 6.811
_pdbe_chem_comp_rdkit_properties.Phi 2.706
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0KX UniChem PDBe 0KX
0KX UniChem ZINC ZINC000032016790
0KX UniChem PubChem 465708
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0KX PG 6.919 1.549 1.321 ETKDGv3 1
0KX O1G 8.554 1.556 1.757 ETKDGv3 2
0KX O2G 6.166 0.649 2.275 ETKDGv3 3
0KX O3G 6.318 3.128 1.439 ETKDGv3 4
0KX PB 5.193 1.218 -0.801 ETKDGv3 5
0KX O1B 4.928 2.883 -0.985 ETKDGv3 6
0KX O2B 5.032 0.538 -2.143 ETKDGv3 7
0KX O3B 6.789 0.953 -0.269 ETKDGv3 8
0KX PA 2.408 0.955 -0.138 ETKDGv3 9
0KX O1A 2.207 2.446 0.027 ETKDGv3 10
0KX O2A 2.138 0.502 -1.749 ETKDGv3 11
0KX N3A 4.045 0.528 0.342 ETKDGv3 12
0KX "O5'" 1.323 0.120 0.879 ETKDGv3 13
0KX "C5'" 0.009 0.411 0.464 ETKDGv3 14
0KX "C4'" -0.984 -0.350 1.349 ETKDGv3 15
0KX "O4'" -2.297 0.053 1.019 ETKDGv3 16
0KX "C3'" -0.857 -1.874 1.175 ETKDGv3 17
0KX "O3'" -0.733 -2.503 2.424 ETKDGv3 18
0KX "C2'" -2.161 -2.266 0.537 ETKDGv3 19
0KX "C1'" -3.075 -1.115 0.905 ETKDGv3 20
0KX N1 -4.135 -0.938 -0.099 ETKDGv3 21
0KX C2 -3.893 -0.318 -1.378 ETKDGv3 22
0KX N3 -4.963 -0.221 -2.323 ETKDGv3 23
0KX C4 -6.142 -0.702 -2.062 ETKDGv3 24
0KX C5 -6.409 -1.374 -0.771 ETKDGv3 25
0KX C6 -5.444 -1.482 0.147 ETKDGv3 26
0KX O2 -2.755 0.132 -1.679 ETKDGv3 27
0KX N4 -7.183 -0.586 -3.031 ETKDGv3 28
0KX H1 8.575 1.973 2.655 ETKDGv3 29
0KX H2 6.940 3.675 0.896 ETKDGv3 30
0KX H3 4.309 2.967 -1.754 ETKDGv3 31
0KX H4 2.301 1.321 -2.282 ETKDGv3 32
0KX H5 4.125 -0.510 0.266 ETKDGv3 33
0KX H6 -0.155 0.107 -0.595 ETKDGv3 34
0KX H7 -0.199 1.500 0.571 ETKDGv3 35
0KX H8 -0.791 -0.065 2.408 ETKDGv3 36
0KX H9 -0.010 -2.173 0.513 ETKDGv3 37
0KX H10 0.207 -2.365 2.715 ETKDGv3 38
0KX H11 -2.550 -3.236 0.916 ETKDGv3 39
0KX H12 -2.030 -2.329 -0.566 ETKDGv3 40
0KX H13 -3.529 -1.318 1.903 ETKDGv3 41
0KX H14 -7.391 -1.786 -0.569 ETKDGv3 42
0KX H15 -5.660 -1.985 1.082 ETKDGv3 43
0KX H16 -8.136 -0.968 -2.840 ETKDGv3 44
0KX H17 -7.003 -0.115 -3.946 ETKDGv3 45
#