data_0L7
#
_chem_comp.id 0L7
_chem_comp.name
2-amino-5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H24 N5 O13 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-02-08
_chem_comp.pdbx_modified_date 2012-05-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 587.309
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0L7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4DFP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0L7 O6 O6 O 0 1 N N N N N N 19.074 -17.533 -3.355 7.187 0.595 -1.813 O6 DGX 1
0L7 C6 C6 C 0 1 N N N N N N 18.792 -18.548 -4.030 6.556 -0.436 -1.656 C6 DGX 2
0L7 N1 N1 N 0 1 N N N N N N 18.247 -19.634 -3.440 7.023 -1.614 -2.127 N1 DGX 3
0L7 C2 C2 C 0 1 N N N N N N 17.937 -20.738 -4.160 6.305 -2.758 -1.943 C2 DGX 4
0L7 N2 N2 N 0 1 N N N N N N 17.391 -21.813 -3.546 6.802 -3.941 -2.430 N2 DGX 5
0L7 N3 N3 N 0 1 N N N N N N 18.165 -20.787 -5.489 5.152 -2.765 -1.314 N3 DGX 6
0L7 C5 C5 C 0 1 Y N N N N N 19.022 -18.584 -5.401 5.321 -0.431 -0.975 C5 DGX 7
0L7 C4 C4 C 0 1 Y N N N N N 18.709 -19.726 -6.129 4.623 -1.635 -0.820 C4 DGX 8
0L7 C7 C7 C 0 1 Y N N N N N 19.553 -17.746 -6.355 4.501 0.606 -0.335 C7 DGX 9
0L7 C32 C32 C 0 1 N N N N N N 19.997 -16.502 -6.160 4.799 2.004 -0.248 C32 DGX 10
0L7 C33 C33 C 0 1 N N N N N N 20.393 -15.403 -5.987 5.043 3.150 -0.176 C33 DGX 11
0L7 C34 C34 C 0 1 N N N N N N 20.847 -14.010 -5.836 5.350 4.587 -0.087 C34 DGX 12
0L7 C35 C35 C 0 1 N N N N N N 20.363 -13.384 -4.527 4.225 5.303 0.663 C35 DGX 13
0L7 C36 C36 C 0 1 N N N N N N 21.076 -13.981 -3.319 4.544 6.797 0.756 C36 DGX 14
0L7 N37 N37 N 0 1 N N N N N N 20.416 -15.206 -2.911 3.464 7.484 1.476 N37 DGX 15
0L7 C8 C8 C 0 1 Y N N N N N 19.546 -18.309 -7.608 3.402 -0.024 0.157 C8 DGX 16
0L7 N9 N9 N 0 1 Y N N N N N 19.038 -19.540 -7.422 3.471 -1.358 -0.140 N9 DGX 17
0L7 "C1'" C1* C 0 1 N N R N N N 18.812 -20.532 -8.498 2.461 -2.351 0.232 C1* DGX 18
0L7 "C2'" C2* C 0 1 N N N N N N 17.393 -20.287 -8.980 2.859 -3.033 1.556 C2* DGX 19
0L7 "C3'" C3* C 0 1 N N S N N N 17.563 -19.604 -10.320 1.671 -2.744 2.504 C3* DGX 20
0L7 "O3'" O3* O 0 1 N N N N N N 16.523 -20.007 -11.213 1.355 -3.894 3.292 O3* DGX 21
0L7 "O4'" O4* O 0 1 N N N N N N 19.693 -20.282 -9.595 1.195 -1.704 0.445 O4* DGX 22
0L7 "C4'" C4* C 0 1 N N R N N N 18.932 -20.073 -10.788 0.528 -2.426 1.506 C4* DGX 23
0L7 "C5'" C5* C 0 1 N N N N N N 19.622 -19.045 -11.675 -0.537 -1.550 2.167 C5* DGX 24
0L7 "O5'" O5* O 0 1 N N N N N N 19.881 -17.879 -10.901 -1.632 -1.369 1.266 O5* DGX 25
0L7 PA PA P 0 1 N N N N N N 19.615 -16.415 -11.506 -2.935 -0.498 1.634 PA DGX 26
0L7 O1A O1A O 0 1 N N N N N N 20.378 -15.416 -10.670 -3.728 -1.204 2.844 O1A DGX 27
0L7 O2A O2A O 0 1 N N N N N N 19.754 -16.399 -13.011 -2.520 0.863 2.042 O2A DGX 28
0L7 O3A O3A O 0 1 N N N N N N 18.067 -16.272 -11.102 -3.897 -0.402 0.346 O3A DGX 29
0L7 PB PB P 0 1 N N N N N N 16.891 -16.371 -12.193 -5.082 0.595 -0.093 PB DGX 30
0L7 O1B O1B O 0 1 N N N N N N 17.403 -17.073 -13.430 -5.915 0.920 1.086 O1B DGX 31
0L7 O2B O2B O 0 1 N N N N N N 15.689 -16.934 -11.468 -4.450 1.949 -0.693 O2B DGX 32
0L7 O3B O3B O 0 1 N N N N N N 16.646 -14.801 -12.463 -5.993 -0.115 -1.214 O3B DGX 33
0L7 PG PG P 0 1 N N N N N N 16.974 -14.090 -13.871 -7.451 0.188 -1.827 PG DGX 34
0L7 O3G O3G O 0 1 N N N N N N 15.667 -14.149 -14.621 -8.364 0.611 -0.741 O3G DGX 35
0L7 O2G O2G O 0 1 N N N N N N 17.395 -12.700 -13.454 -7.340 1.361 -2.923 O2G DGX 36
0L7 O1G O1G O 0 1 N N N N N N 18.093 -14.914 -14.469 -8.028 -1.145 -2.523 O1G DGX 37
0L7 H1 H1 H 0 1 N N N N N N 18.070 -19.622 -2.456 7.872 -1.646 -2.596 H1 DGX 38
0L7 H2 H2 H 0 1 N N N N N N 17.162 -22.629 -4.077 7.653 -3.953 -2.897 H2 DGX 39
0L7 H3 H3 H 0 1 N N N N N N 17.216 -21.791 -2.562 6.304 -4.764 -2.308 H3 DGX 40
0L7 H4 H4 H 0 1 N N N N N N 21.947 -13.992 -5.852 6.289 4.726 0.449 H4 DGX 41
0L7 H5 H5 H 0 1 N N N N N N 20.458 -13.417 -6.677 5.440 5.003 -1.091 H5 DGX 42
0L7 H6 H6 H 0 1 N N N N N N 20.557 -12.302 -4.556 3.286 5.165 0.127 H6 DGX 43
0L7 H7 H7 H 0 1 N N N N N N 19.282 -13.560 -4.426 4.136 4.887 1.667 H7 DGX 44
0L7 H8 H8 H 0 1 N N N N N N 22.121 -14.201 -3.584 5.483 6.935 1.292 H8 DGX 45
0L7 H9 H9 H 0 1 N N N N N N 21.052 -13.260 -2.489 4.633 7.212 -0.248 H9 DGX 46
0L7 H10 H10 H 0 1 N N N N N N 20.889 -15.592 -2.119 3.318 7.074 2.386 H10 DGX 47
0L7 H11 H11 H 0 1 N N N N N N 19.466 -15.008 -2.669 3.651 8.472 1.551 H11 DGX 48
0L7 H13 H13 H 0 1 N N N N N N 19.875 -17.863 -8.535 2.594 0.455 0.689 H13 DGX 49
0L7 H14 H14 H 0 1 N N N N N N 18.916 -21.558 -8.116 2.367 -3.098 -0.556 H14 DGX 50
0L7 H15 H15 H 0 1 N N N N N N 16.850 -19.637 -8.278 2.980 -4.106 1.411 H15 DGX 51
0L7 H16 H16 H 0 1 N N N N N N 16.851 -21.237 -9.094 3.778 -2.596 1.948 H16 DGX 52
0L7 H17 H17 H 0 1 N N N N N N 17.569 -18.512 -10.186 1.881 -1.885 3.141 H17 DGX 53
0L7 H18 H18 H 0 1 N N N N N N 15.687 -19.696 -10.887 2.075 -4.186 3.868 H18 DGX 54
0L7 H19 H19 H 0 1 N N N N N N 18.822 -21.015 -11.345 0.087 -3.346 1.122 H19 DGX 55
0L7 H20 H20 H 0 1 N N N N N N 18.970 -18.790 -12.523 -0.892 -2.034 3.077 H20 DGX 56
0L7 H21 H21 H 0 1 N N N N N N 20.569 -19.457 -12.052 -0.107 -0.580 2.416 H21 DGX 57
0L7 H22 H22 H 0 1 N N N N N N 20.893 -14.855 -11.238 -4.030 -2.101 2.646 H22 DGX 58
0L7 H23 H23 H 0 1 N N N N N N 15.386 -17.715 -11.915 -3.891 1.811 -1.470 H23 DGX 59
0L7 H24 H24 H 0 1 N N N N N N 16.744 -12.071 -13.743 -6.757 1.152 -3.665 H24 DGX 60
0L7 H25 H25 H 0 1 N N N N N N 18.010 -15.816 -14.183 -8.905 -1.036 -2.914 H25 DGX 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0L7 O3G PG DOUB N N 1
0L7 O1G PG SING N N 2
0L7 PG O2G SING N N 3
0L7 PG O3B SING N N 4
0L7 O1B PB DOUB N N 5
0L7 O2A PA DOUB N N 6
0L7 O3B PB SING N N 7
0L7 PB O2B SING N N 8
0L7 PB O3A SING N N 9
0L7 "C5'" "O5'" SING N N 10
0L7 "C5'" "C4'" SING N N 11
0L7 PA O3A SING N N 12
0L7 PA "O5'" SING N N 13
0L7 PA O1A SING N N 14
0L7 "O3'" "C3'" SING N N 15
0L7 "C4'" "C3'" SING N N 16
0L7 "C4'" "O4'" SING N N 17
0L7 "C3'" "C2'" SING N N 18
0L7 "O4'" "C1'" SING N N 19
0L7 "C2'" "C1'" SING N N 20
0L7 "C1'" N9 SING N N 21
0L7 C8 N9 SING Y N 22
0L7 C8 C7 DOUB Y N 23
0L7 N9 C4 SING Y N 24
0L7 C7 C32 SING N N 25
0L7 C7 C5 SING Y N 26
0L7 C32 C33 TRIP N N 27
0L7 C4 N3 SING N N 28
0L7 C4 C5 DOUB Y N 29
0L7 C33 C34 SING N N 30
0L7 C34 C35 SING N N 31
0L7 N3 C2 DOUB N N 32
0L7 C5 C6 SING N N 33
0L7 C35 C36 SING N N 34
0L7 C2 N2 SING N N 35
0L7 C2 N1 SING N N 36
0L7 C6 N1 SING N N 37
0L7 C6 O6 DOUB N N 38
0L7 C36 N37 SING N N 39
0L7 N1 H1 SING N N 40
0L7 N2 H2 SING N N 41
0L7 N2 H3 SING N N 42
0L7 C34 H4 SING N N 43
0L7 C34 H5 SING N N 44
0L7 C35 H6 SING N N 45
0L7 C35 H7 SING N N 46
0L7 C36 H8 SING N N 47
0L7 C36 H9 SING N N 48
0L7 N37 H10 SING N N 49
0L7 N37 H11 SING N N 50
0L7 C8 H13 SING N N 51
0L7 "C1'" H14 SING N N 52
0L7 "C2'" H15 SING N N 53
0L7 "C2'" H16 SING N N 54
0L7 "C3'" H17 SING N N 55
0L7 "O3'" H18 SING N N 56
0L7 "C4'" H19 SING N N 57
0L7 "C5'" H20 SING N N 58
0L7 "C5'" H21 SING N N 59
0L7 O1A H22 SING N N 60
0L7 O2B H23 SING N N 61
0L7 O2G H24 SING N N 62
0L7 O1G H25 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0L7 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC3OC(n2c1N=C(N)NC(=O)c1c(C#CCCCN)c2)CC3O"
0L7 InChI InChI 1.03 InChI=1S/C16H24N5O13P3/c17-5-3-1-2-4-9-7-21(14-13(9)15(23)20-16(18)19-14)12-6-10(22)11(32-12)8-31-36(27,28)34-37(29,30)33-35(24,25)26/h7,10-12,22H,1,3,5-6,8,17H2,(H,27,28)(H,29,30)(H2,24,25,26)(H3,18,19,20,23)/t10-,11+,12+/m0/s1
0L7 InChIKey InChI 1.03 XIWGGMXHUSVMFH-QJPTWQEYSA-N
0L7 SMILES_CANONICAL CACTVS 3.370 "NCCCC#Cc1cn([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)c3N=C(N)NC(=O)c13"
0L7 SMILES CACTVS 3.370 "NCCCC#Cc1cn([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)c3N=C(N)NC(=O)c13"
0L7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N)C#CCCCN"
0L7 SMILES "OpenEye OEToolkits" 1.7.6 "c1c(c2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N=C(NC2=O)N)C#CCCCN"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0L7 "SYSTEMATIC NAME" ACDLabs 12.01 2-amino-5-(5-aminopent-1-yn-1-yl)-7-{2-deoxy-5-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-erythro-pentofuranosyl}-3,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one
0L7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-[2-azanyl-5-(5-azanylpent-1-ynyl)-4-oxidanylidene-3H-pyrrolo[2,3-d]pyrimidin-7-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#
_pdbx_chem_comp_audit.comp_id 0L7
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2012-02-08
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0L7 O6 O 6.404 2.859 1
0L7 C6 C 6.404 1.359 2
0L7 N1 N 5.104 0.609 3
0L7 C2 C 5.104 -0.891 4
0L7 N2 N 3.805 -1.641 5
0L7 N3 N 6.404 -1.641 6
0L7 C5 C 7.702 0.609 7
0L7 C4 C 7.702 -0.891 8
0L7 C7 C 9.122 1.066 9
0L7 C32 C 9.588 2.492 10
0L7 C33 C 10.054 3.917 11
0L7 C34 C 10.520 5.343 12
0L7 C35 C 11.988 5.652 13
0L7 C36 C 12.454 7.078 14
0L7 N37 N 13.921 7.388 15
0L7 C8 C 9.997 -0.141 16
0L7 N9 N 9.122 -1.348 17
0L7 "C1'" C 9.588 -2.774 18
0L7 "C2'" C 8.708 -3.989 19
0L7 "C3'" C 9.592 -5.201 20
0L7 "O3'" O 9.131 -6.629 21
0L7 "O4'" O 11.015 -3.235 22
0L7 "C4'" C 11.018 -4.735 23
0L7 "C5'" C 12.233 -5.615 24
0L7 "O5'" O 13.602 -5.002 25
0L7 PA P 14.817 -5.882 26
0L7 O1A O 13.938 -7.097 27
0L7 O2A O 15.697 -4.667 28
0L7 O3A O 16.032 -6.761 29
0L7 PB P 17.401 -6.149 30
0L7 O1B O 18.014 -7.518 31
0L7 O2B O 16.789 -4.780 32
0L7 O3B O 18.771 -5.537 33
0L7 PG P 19.986 -6.416 34
0L7 O3G O 21.201 -7.296 35
0L7 O2G O 19.106 -7.631 36
0L7 O1G O 20.865 -5.201 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0L7 O3G PG DOUBLE NONE 1
0L7 O1G PG SINGLE NONE 2
0L7 PG O2G SINGLE NONE 3
0L7 PG O3B SINGLE NONE 4
0L7 O1B PB DOUBLE NONE 5
0L7 O2A PA DOUBLE NONE 6
0L7 O3B PB SINGLE NONE 7
0L7 PB O2B SINGLE BEGINDASH 8
0L7 PB O3A SINGLE NONE 9
0L7 "C5'" "O5'" SINGLE NONE 10
0L7 "C4'" "C5'" SINGLE BEGINDASH 11
0L7 PA O3A SINGLE NONE 12
0L7 PA "O5'" SINGLE NONE 13
0L7 PA O1A SINGLE BEGINDASH 14
0L7 "C3'" "O3'" SINGLE BEGINWEDGE 15
0L7 "C4'" "C3'" SINGLE NONE 16
0L7 "C4'" "O4'" SINGLE NONE 17
0L7 "C3'" "C2'" SINGLE NONE 18
0L7 "O4'" "C1'" SINGLE NONE 19
0L7 "C2'" "C1'" SINGLE NONE 20
0L7 "C1'" N9 SINGLE BEGINDASH 21
0L7 C8 N9 SINGLE NONE 22
0L7 C8 C7 DOUBLE NONE 23
0L7 N9 C4 SINGLE NONE 24
0L7 C7 C32 SINGLE NONE 25
0L7 C7 C5 SINGLE NONE 26
0L7 C32 C33 TRIPLE NONE 27
0L7 C4 N3 SINGLE NONE 28
0L7 C4 C5 DOUBLE NONE 29
0L7 C33 C34 SINGLE NONE 30
0L7 C34 C35 SINGLE NONE 31
0L7 N3 C2 DOUBLE NONE 32
0L7 C5 C6 SINGLE NONE 33
0L7 C35 C36 SINGLE NONE 34
0L7 C2 N2 SINGLE NONE 35
0L7 C2 N1 SINGLE NONE 36
0L7 C6 N1 SINGLE NONE 37
0L7 C6 O6 DOUBLE NONE 38
0L7 C36 N37 SINGLE NONE 39
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0L7 MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ccn2[C@H]1CCCO1' InChI=1S/C10H11N3O2/c14-10-7-3-4-13(8-2-1-5-15-8)9(7)11-6-12-10/h3-4,6,8H,1-2,5H2,(H,11,12,14)/t8-/m1/s1 KMILJNWZZSWZDI-MRVPVSSYSA-N
0L7 deoxyribose F1 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
0L7 phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
0L7 pyrimidine F3 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
0L7 pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0L7 O6 S1 1
0L7 C6 S1 1
0L7 N1 S1 1
0L7 C2 S1 1
0L7 N3 S1 1
0L7 C5 S1 1
0L7 C4 S1 1
0L7 C7 S1 1
0L7 C8 S1 1
0L7 N9 S1 1
0L7 "C1'" S1 1
0L7 "C2'" S1 1
0L7 "C3'" S1 1
0L7 "O4'" S1 1
0L7 "C4'" S1 1
0L7 "C1'" F1 1
0L7 "C2'" F1 1
0L7 "C3'" F1 1
0L7 "O3'" F1 1
0L7 "C4'" F1 1
0L7 "O4'" F1 1
0L7 "C5'" F1 1
0L7 "O5'" F1 1
0L7 "O5'" F2 1
0L7 PA F2 1
0L7 O2A F2 1
0L7 O3A F2 1
0L7 O1A F2 1
0L7 O3A F2 2
0L7 PB F2 2
0L7 O1B F2 2
0L7 O3B F2 2
0L7 O2B F2 2
0L7 O3B F2 3
0L7 PG F2 3
0L7 O3G F2 3
0L7 O1G F2 3
0L7 O2G F2 3
0L7 C5 F3 1
0L7 C4 F3 1
0L7 N3 F3 1
0L7 C2 F3 1
0L7 N1 F3 1
0L7 C6 F3 1
0L7 C4 F4 1
0L7 C5 F4 1
0L7 C7 F4 1
0L7 C8 F4 1
0L7 N9 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0L7
_pdbe_chem_comp_rdkit_properties.exactmw 587.058
_pdbe_chem_comp_rdkit_properties.amw 587.312
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 17
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 21
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 241.973
_pdbe_chem_comp_rdkit_properties.tpsa 292.000
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.575
_pdbe_chem_comp_rdkit_properties.CrippenMR 121.095
_pdbe_chem_comp_rdkit_properties.chi0v 19.568
_pdbe_chem_comp_rdkit_properties.chi1v 12.856
_pdbe_chem_comp_rdkit_properties.chi2v 6.892
_pdbe_chem_comp_rdkit_properties.chi3v 6.892
_pdbe_chem_comp_rdkit_properties.chi4v 4.950
_pdbe_chem_comp_rdkit_properties.chi0n 40.885
_pdbe_chem_comp_rdkit_properties.chi1n 19.751
_pdbe_chem_comp_rdkit_properties.chi2n 3.377
_pdbe_chem_comp_rdkit_properties.chi3n 3.377
_pdbe_chem_comp_rdkit_properties.chi4n 2.275
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.930
_pdbe_chem_comp_rdkit_properties.kappa1 10.915
_pdbe_chem_comp_rdkit_properties.kappa2 11.440
_pdbe_chem_comp_rdkit_properties.kappa3 8.027
_pdbe_chem_comp_rdkit_properties.Phi 3.375
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0L7 UniChem PDBe 0L7
0L7 UniChem ZINC ZINC000098207827
0L7 UniChem PubChem 135566696
0L7 UniChem Nikkaji J1.466.027E
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0L7 O6 4.114 0.208 -2.396 ETKDGv3 1
0L7 C6 2.916 0.182 -2.010 ETKDGv3 2
0L7 N1 1.894 0.908 -2.710 ETKDGv3 3
0L7 C2 0.535 0.875 -2.219 ETKDGv3 4
0L7 N2 -0.485 1.607 -2.897 ETKDGv3 5
0L7 N3 0.234 0.182 -1.151 ETKDGv3 6
0L7 C5 2.502 -0.577 -0.834 ETKDGv3 7
0L7 C4 1.244 -0.564 -0.454 ETKDGv3 8
0L7 C7 3.252 -1.329 0.164 ETKDGv3 9
0L7 C32 4.673 -1.536 0.198 ETKDGv3 10
0L7 C33 5.867 -1.705 0.220 ETKDGv3 11
0L7 C34 7.319 -1.907 0.241 ETKDGv3 12
0L7 C35 7.975 -1.163 -0.928 ETKDGv3 13
0L7 C36 9.483 -1.450 -1.037 ETKDGv3 14
0L7 N37 10.244 -0.872 0.071 ETKDGv3 15
0L7 C8 2.385 -1.721 1.095 ETKDGv3 16
0L7 N9 1.062 -1.294 0.756 ETKDGv3 17
0L7 "C1'" -0.060 -1.187 1.688 ETKDGv3 18
0L7 "C2'" -0.013 0.140 2.447 ETKDGv3 19
0L7 "C3'" -1.264 0.848 1.994 ETKDGv3 20
0L7 "O3'" -1.879 1.580 3.028 ETKDGv3 21
0L7 "O4'" -1.277 -1.289 0.978 ETKDGv3 22
0L7 "C4'" -2.135 -0.294 1.481 ETKDGv3 23
0L7 "C5'" -3.100 0.171 0.388 ETKDGv3 24
0L7 "O5'" -3.893 -0.919 -0.018 ETKDGv3 25
0L7 PA -5.020 -0.364 -1.171 ETKDGv3 26
0L7 O1A -4.192 0.255 -2.513 ETKDGv3 27
0L7 O2A -5.865 -1.529 -1.637 ETKDGv3 28
0L7 O3A -6.007 0.864 -0.519 ETKDGv3 29
0L7 PB -6.962 0.180 0.717 ETKDGv3 30
0L7 O1B -7.938 -0.822 0.136 ETKDGv3 31
0L7 O2B -5.982 -0.590 1.866 ETKDGv3 32
0L7 O3B -7.829 1.402 1.526 ETKDGv3 33
0L7 PG -8.653 2.326 0.356 ETKDGv3 34
0L7 O3G -9.515 1.441 -0.518 ETKDGv3 35
0L7 O2G -7.546 3.177 -0.604 ETKDGv3 36
0L7 O1G -9.646 3.437 1.157 ETKDGv3 37
0L7 H1 2.136 1.464 -3.560 ETKDGv3 38
0L7 H2 -0.258 2.164 -3.749 ETKDGv3 39
0L7 H3 -1.469 1.596 -2.547 ETKDGv3 40
0L7 H4 7.528 -2.996 0.168 ETKDGv3 41
0L7 H5 7.708 -1.527 1.209 ETKDGv3 42
0L7 H6 7.495 -1.489 -1.878 ETKDGv3 43
0L7 H7 7.806 -0.069 -0.824 ETKDGv3 44
0L7 H8 9.858 -1.013 -1.987 ETKDGv3 45
0L7 H9 9.662 -2.546 -1.082 ETKDGv3 46
0L7 H10 10.013 -1.385 0.952 ETKDGv3 47
0L7 H11 9.972 0.130 0.195 ETKDGv3 48
0L7 H13 2.640 -2.254 2.003 ETKDGv3 49
0L7 H14 -0.006 -2.031 2.411 ETKDGv3 50
0L7 H15 -0.031 -0.055 3.542 ETKDGv3 51
0L7 H16 0.892 0.742 2.207 ETKDGv3 52
0L7 H17 -1.003 1.543 1.165 ETKDGv3 53
0L7 H18 -2.111 0.950 3.760 ETKDGv3 54
0L7 H19 -2.729 -0.733 2.315 ETKDGv3 55
0L7 H20 -2.508 0.560 -0.470 ETKDGv3 56
0L7 H21 -3.731 0.987 0.808 ETKDGv3 57
0L7 H22 -4.103 1.224 -2.333 ETKDGv3 58
0L7 H23 -6.011 -1.553 1.634 ETKDGv3 59
0L7 H24 -8.103 3.665 -1.262 ETKDGv3 60
0L7 H25 -10.081 3.957 0.435 ETKDGv3 61
#