data_0P1
#
_chem_comp.id 0P1
_chem_comp.name
;N-[(benzyloxy)carbonyl]-L-alanyl-N-{(1S)-1-[(R)-[(1R)-1-benzyl-2-methoxy-2-oxoethoxy](hydroxy)phosphoryl]-3-methylbutyl
}-L-alaninamide
;
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H40 N3 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Cbz-Ala-Ala-Leu(P)-(O)-Phe-OMe
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-10-27
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 605.616
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0P1
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1PPM
_chem_comp.pdbx_subcomponent_list "PHQ ALA ALA ZPH"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0P1 C1 C1 C 0 1 N N N N N N 16.961 5.056 18.839 6.668 -0.647 0.404 C1 PHQ 1
0P1 O1 O1 O 0 1 N N N N N N 16.786 4.793 20.063 6.519 -1.813 0.712 O1 PHQ 2
0P1 O2 O2 O 0 1 N N N N N N 15.838 4.904 17.992 7.900 -0.172 0.140 O2 PHQ 3
0P1 C2 C2 C 0 1 N N N N N N 14.571 4.871 18.705 9.004 -1.110 0.244 C2 PHQ 4
0P1 C3 C3 C 0 1 Y N N N N N 13.991 3.494 18.504 10.294 -0.405 -0.084 C3 PHQ 5
0P1 C4 C4 C 0 1 Y N N N N N 13.375 2.828 19.582 11.022 0.207 0.919 C4 PHQ 6
0P1 C5 C5 C 0 1 Y N N N N N 12.849 1.571 19.388 12.206 0.854 0.618 C5 PHQ 7
0P1 C6 C6 C 0 1 Y N N N N N 12.915 1.001 18.112 12.662 0.889 -0.686 C6 PHQ 8
0P1 C7 C7 C 0 1 Y N N N N N 13.546 1.669 17.036 11.935 0.277 -1.689 C7 PHQ 9
0P1 C8 C8 C 0 1 Y N N N N N 14.080 2.953 17.244 10.753 -0.374 -1.388 C8 PHQ 10
0P1 N N1 N 0 1 N N N N N N 18.071 5.525 18.386 5.599 0.169 0.320 N ALA 11
0P1 CA C9 C 0 1 N N S N N N 19.205 5.754 19.248 4.258 -0.349 0.601 CA ALA 12
0P1 C C10 C 0 1 N N N N N N 19.030 7.103 20.012 3.234 0.493 -0.117 C ALA 13
0P1 O O3 O 0 1 N N N N N N 18.161 7.950 19.602 3.589 1.432 -0.796 O ALA 14
0P1 CB C11 C 0 1 N N N N N N 20.362 5.945 18.256 3.996 -0.296 2.108 CB ALA 15
0P1 N1 N2 N 0 1 N N N N N N 19.818 7.245 21.046 1.923 0.201 -0.004 N ALA 16
0P1 CA1 C12 C 0 1 N N S N N N 19.787 8.486 21.820 0.927 1.018 -0.701 CA ALA 17
0P1 C9 C13 C 0 1 N N N N N N 21.248 8.850 22.054 -0.394 0.923 0.017 C ALA 18
0P1 O3 O5 O 0 1 N N N N N N 21.810 8.471 23.059 -0.495 0.238 1.013 O ALA 19
0P1 CB1 C14 C 0 1 N N N N N N 18.912 8.385 23.090 0.766 0.512 -2.136 CB ALA 20
0P1 CA2 C15 C 0 1 N N R N N N 23.271 9.945 21.125 -2.749 1.504 0.250 C1 ZPH 21
0P1 CB2 C16 C 0 1 N N N N N N 24.034 9.373 19.866 -3.360 2.900 0.382 C2 ZPH 22
0P1 CG C17 C 0 1 N N N N N N 23.768 7.877 19.529 -4.702 2.803 1.111 C3 ZPH 23
0P1 CD1 C18 C 0 1 N N N N N N 24.499 7.605 18.216 -4.469 2.325 2.546 C4 ZPH 24
0P1 CD2 C19 C 0 1 N N N N N N 24.255 6.951 20.675 -5.371 4.178 1.134 C5 ZPH 25
0P1 N2 N3 N 0 1 N N N N N N 21.889 9.568 21.082 -1.464 1.597 -0.448 N ZPH 26
0P1 P P1 P 0 1 N N N N N N 23.455 11.772 21.239 -3.879 0.433 -0.698 P1 ZPH 27
0P1 O11 O7 O 0 1 N N N N N N 24.835 12.087 21.250 -4.186 1.069 -1.999 O1 ZPH 28
0P1 O21 O8 O 0 1 N N N N N N 22.528 12.322 20.307 -3.181 -0.995 -0.951 O2 ZPH 29
0P1 CA3 C20 C 0 1 N N S N N N 23.511 13.042 23.514 -6.371 -0.481 -0.390 C6 ZPH 30
0P1 CB3 C21 C 0 1 N N N N N N 22.344 13.909 24.038 -6.683 -1.680 0.509 C7 ZPH 31
0P1 CG1 C22 C 0 1 Y N N N N N 21.335 13.152 24.864 -5.539 -2.660 0.454 C8 ZPH 32
0P1 CD11 C23 C 0 0 Y N N N N N 21.404 13.365 26.264 -4.494 -2.553 1.352 C9 ZPH 33
0P1 CD21 C24 C 0 0 Y N N N N N 20.383 12.298 24.360 -5.539 -3.669 -0.491 C10 ZPH 34
0P1 CE1 C25 C 0 1 Y N N N N N 20.545 12.734 27.139 -3.445 -3.452 1.301 C11 ZPH 35
0P1 CE2 C26 C 0 1 Y N N N N N 19.511 11.681 25.222 -4.490 -4.568 -0.541 C12 ZPH 36
0P1 CZ C27 C 0 1 Y N N N N N 19.604 11.874 26.598 -3.441 -4.458 0.353 C13 ZPH 37
0P1 CC C28 C 0 1 N N N N N N 24.232 12.497 24.739 -7.564 0.439 -0.432 C14 ZPH 38
0P1 CS C29 C 0 1 N N N N N N 25.714 12.999 26.630 -9.822 0.960 -0.986 C15 ZPH 39
0P1 OP O9 O 0 1 N N N N N N 22.955 11.942 22.718 -5.243 0.224 0.131 O3 ZPH 40
0P1 OS O10 O 0 1 N N N N N N 24.739 13.313 25.741 -8.715 0.021 -0.981 O4 ZPH 41
0P1 O4 O11 O 0 1 N N N N N N 24.407 11.320 24.920 -7.484 1.553 0.029 O5 ZPH 42
0P1 H21 H2 H 0 1 N N N N N N 14.730 5.067 19.776 9.052 -1.503 1.260 H21 PHQ 43
0P1 H22 H3 H 0 1 N N N N N N 13.888 5.636 18.306 8.850 -1.931 -0.456 H22 PHQ 44
0P1 H41 H4 H 0 1 N N N N N N 13.316 3.300 20.552 10.666 0.179 1.939 H41 PHQ 45
0P1 H51 H5 H 0 1 N N N N N N 12.393 1.034 20.207 12.774 1.332 1.402 H51 PHQ 46
0P1 H61 H6 H 0 1 N N N N N N 12.474 0.029 17.945 13.587 1.395 -0.921 H61 PHQ 47
0P1 H71 H7 H 0 1 N N N N N N 13.617 1.198 16.067 12.291 0.304 -2.708 H71 PHQ 48
0P1 H81 H8 H 0 1 N N N N N N 14.547 3.498 16.437 10.187 -0.856 -2.171 H81 PHQ 49
0P1 H H9 H 0 1 N N N N N N 18.149 5.736 17.412 5.718 1.100 0.074 H ALA 50
0P1 HA H11 H 0 1 N N N N N N 19.346 4.946 19.981 4.187 -1.380 0.256 HA ALA 51
0P1 HB1 H12 H 0 1 N N N N N N 21.294 6.130 18.810 2.998 -0.681 2.316 HB1 ALA 52
0P1 HB2 H13 H 0 1 N N N N N N 20.473 5.038 17.644 4.736 -0.904 2.626 HB2 ALA 53
0P1 HB3 H14 H 0 1 N N N N N N 20.147 6.804 17.603 4.067 0.736 2.453 HB3 ALA 54
0P1 H1 H16 H 0 1 N N N N N N 20.440 6.507 21.307 1.638 -0.551 0.540 H ALA 55
0P1 HA1 H18 H 0 1 N N N N N N 19.286 9.303 21.280 1.257 2.057 -0.717 HA ALA 56
0P1 HB11 H19 H 0 0 N N N N N N 18.930 9.346 23.626 0.436 -0.527 -2.120 HB1 ALA 57
0P1 HB21 H20 H 0 0 N N N N N N 17.878 8.144 22.804 0.026 1.120 -2.655 HB2 ALA 58
0P1 HB31 H21 H 0 0 N N N N N N 19.306 7.593 23.744 1.722 0.581 -2.655 HB3 ALA 59
0P1 HA2 H23 H 0 1 N N N N N N 23.722 9.510 22.029 -2.593 1.079 1.242 H1 ZPH 60
0P1 HB12 H24 H 0 0 N N N N N N 23.720 9.966 18.995 -2.684 3.540 0.949 H ZPH 61
0P1 HB22 H25 H 0 0 N N N N N N 25.112 9.479 20.059 -3.516 3.324 -0.610 H3 ZPH 62
0P1 HG H26 H 0 1 N N N N N N 22.693 7.669 19.423 -5.346 2.093 0.592 H4 ZPH 63
0P1 HD11 H27 H 0 0 N N N N N N 24.348 6.556 17.922 -5.425 2.255 3.065 H5 ZPH 64
0P1 HD12 H28 H 0 0 N N N N N N 24.102 8.266 17.432 -3.992 1.345 2.530 H6 ZPH 65
0P1 HD13 H29 H 0 0 N N N N N N 25.574 7.798 18.348 -3.824 3.034 3.065 H7 ZPH 66
0P1 HD21 H30 H 0 0 N N N N N N 24.055 5.902 20.410 -5.537 4.519 0.112 H8 ZPH 67
0P1 HD22 H31 H 0 0 N N N N N N 25.336 7.091 20.825 -6.327 4.109 1.653 H9 ZPH 68
0P1 HD23 H32 H 0 0 N N N N N N 23.720 7.203 21.602 -4.726 4.887 1.653 H10 ZPH 69
0P1 HN2 H34 H 0 1 N N N N N N 21.355 9.850 20.285 -1.384 2.144 -1.245 H11 ZPH 70
0P1 HO2 H36 H 0 1 N N N N N N 22.983 12.913 19.719 -2.951 -1.470 -0.140 H12 ZPH 71
0P1 HA3 H37 H 0 1 N N N N N N 24.205 13.616 22.882 -6.147 -0.832 -1.397 H13 ZPH 72
0P1 HB13 H38 H 0 0 N N N N N N 22.769 14.704 24.668 -6.820 -1.339 1.535 H14 ZPH 73
0P1 HB23 H39 H 0 0 N N N N N N 21.820 14.333 23.169 -7.595 -2.166 0.163 H15 ZPH 74
0P1 HD1 H40 H 0 1 N N N N N N 22.150 14.040 26.656 -4.496 -1.767 2.092 H16 ZPH 75
0P1 HD2 H41 H 0 1 N N N N N N 20.322 12.115 23.297 -6.358 -3.756 -1.189 H17 ZPH 76
0P1 HE1 H42 H 0 1 N N N N N N 20.604 12.904 28.204 -2.627 -3.368 2.002 H18 ZPH 77
0P1 HE2 H43 H 0 1 N N N N N N 18.741 11.036 24.827 -4.490 -5.357 -1.279 H19 ZPH 78
0P1 HZ H44 H 0 1 N N N N N N 18.930 11.344 27.255 -2.622 -5.160 0.314 H20 ZPH 79
0P1 HS1 H45 H 0 1 N N N N N N 25.893 13.855 27.297 -10.070 1.236 0.039 H21 ZPH 80
0P1 HS2 H46 H 0 1 N N N N N N 25.400 12.130 27.226 -9.539 1.852 -1.544 H22 ZPH 81
0P1 HS3 H47 H 0 1 N N N N N N 26.640 12.757 26.088 -10.689 0.497 -1.458 H23 ZPH 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0P1 C1 O1 DOUB N N 1
0P1 C1 O2 SING N N 2
0P1 O2 C2 SING N N 3
0P1 C2 C3 SING N N 4
0P1 C2 H21 SING N N 5
0P1 C2 H22 SING N N 6
0P1 C3 C4 DOUB Y N 7
0P1 C3 C8 SING Y N 8
0P1 C4 C5 SING Y N 9
0P1 C4 H41 SING N N 10
0P1 C5 C6 DOUB Y N 11
0P1 C5 H51 SING N N 12
0P1 C6 C7 SING Y N 13
0P1 C6 H61 SING N N 14
0P1 C7 C8 DOUB Y N 15
0P1 C7 H71 SING N N 16
0P1 C8 H81 SING N N 17
0P1 N CA SING N N 18
0P1 N H SING N N 19
0P1 CA C SING N N 20
0P1 CA CB SING N N 21
0P1 CA HA SING N N 22
0P1 C O DOUB N N 23
0P1 CB HB1 SING N N 24
0P1 CB HB2 SING N N 25
0P1 CB HB3 SING N N 26
0P1 N1 CA1 SING N N 27
0P1 N1 H1 SING N N 28
0P1 CA1 C9 SING N N 29
0P1 CA1 CB1 SING N N 30
0P1 CA1 HA1 SING N N 31
0P1 C9 O3 DOUB N N 32
0P1 CB1 HB11 SING N N 33
0P1 CB1 HB21 SING N N 34
0P1 CB1 HB31 SING N N 35
0P1 CA2 CB2 SING N N 36
0P1 CA2 N2 SING N N 37
0P1 CA2 P SING N N 38
0P1 CA2 HA2 SING N N 39
0P1 CB2 CG SING N N 40
0P1 CB2 HB12 SING N N 41
0P1 CB2 HB22 SING N N 42
0P1 CG CD1 SING N N 43
0P1 CG CD2 SING N N 44
0P1 CG HG SING N N 45
0P1 CD1 HD11 SING N N 46
0P1 CD1 HD12 SING N N 47
0P1 CD1 HD13 SING N N 48
0P1 CD2 HD21 SING N N 49
0P1 CD2 HD22 SING N N 50
0P1 CD2 HD23 SING N N 51
0P1 N2 HN2 SING N N 52
0P1 P O11 DOUB N N 53
0P1 P O21 SING N N 54
0P1 O21 HO2 SING N N 55
0P1 CA3 CB3 SING N N 56
0P1 CA3 CC SING N N 57
0P1 CA3 OP SING N N 58
0P1 CA3 HA3 SING N N 59
0P1 CB3 CG1 SING N N 60
0P1 CB3 HB13 SING N N 61
0P1 CB3 HB23 SING N N 62
0P1 CG1 CD11 DOUB Y N 63
0P1 CG1 CD21 SING Y N 64
0P1 CD11 CE1 SING Y N 65
0P1 CD11 HD1 SING N N 66
0P1 CD21 CE2 DOUB Y N 67
0P1 CD21 HD2 SING N N 68
0P1 CE1 CZ DOUB Y N 69
0P1 CE1 HE1 SING N N 70
0P1 CE2 CZ SING Y N 71
0P1 CE2 HE2 SING N N 72
0P1 CZ HZ SING N N 73
0P1 CC OS SING N N 74
0P1 CC O4 DOUB N N 75
0P1 CS OS SING N N 76
0P1 CS HS1 SING N N 77
0P1 CS HS2 SING N N 78
0P1 CS HS3 SING N N 79
0P1 C1 N SING N N 80
0P1 C N1 SING N N 81
0P1 C9 N2 SING N N 82
0P1 P OP SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0P1 SMILES ACDLabs 12.01 O=C(OC)C(OP(=O)(O)C(NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)C)C)CC(C)C)Cc2ccccc2
0P1 SMILES_CANONICAL CACTVS 3.370 COC(=O)[C@H](Cc1ccccc1)O[P](O)(=O)[C@H](CC(C)C)NC(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)OCc2ccccc2
0P1 SMILES CACTVS 3.370 COC(=O)[CH](Cc1ccccc1)O[P](O)(=O)[CH](CC(C)C)NC(=O)[CH](C)NC(=O)[CH](C)NC(=O)OCc2ccccc2
0P1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C[C@@H](C(=O)N[C@@H](CC(C)C)[P@@](=O)(O)O[C@@H](Cc1ccccc1)C(=O)OC)NC(=O)[C@H](C)NC(=O)OCc2ccccc2
0P1 SMILES "OpenEye OEToolkits" 1.7.0 CC(C)CC(NC(=O)C(C)NC(=O)C(C)NC(=O)OCc1ccccc1)P(=O)(O)OC(Cc2ccccc2)C(=O)OC
0P1 InChI InChI 1.03 InChI=1S/C29H40N3O9P/c1-19(2)16-25(42(37,38)41-24(28(35)39-5)17-22-12-8-6-9-13-22)32-27(34)20(3)30-26(33)21(4)31-29(36)40-18-23-14-10-7-11-15-23/h6-15,19-21,24-25H,16-18H2,1-5H3,(H,30,33)(H,31,36)(H,32,34)(H,37,38)/t20-,21-,24-,25+/m0/s1
0P1 InChIKey InChI 1.03 VWCUANLUSQBJLX-WIHVIGOGSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0P1 "SYSTEMATIC NAME" ACDLabs 12.01 N-[(benzyloxy)carbonyl]-L-alanyl-N-{(1R)-1-[(R)-hydroxy{[(2S)-1-methoxy-1-oxo-3-phenylpropan-2-yl]oxy}phosphoryl]-3-methylbutyl}-L-alaninamide
0P1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2S)-1-methoxy-1-oxo-3-phenyl-propan-2-yl]oxy-[(1R)-3-methyl-1-[[(2S)-2-[[(2S)-2-(phenylmethoxycarbonylamino)propanoyl]amino]propanoyl]amino]butyl]phosphinic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0P1 'Other modification' 2008-10-27 RCSB
0P1 'Other modification' 2010-10-26 RCSB
0P1 'Other modification' 2011-11-15 RCSB
0P1 'Modify aromatic_flag' 2011-06-04 RCSB
0P1 'Modify descriptor' 2011-06-04 RCSB
0P1 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 0P1
_pdbx_chem_comp_synonyms.name Cbz-Ala-Ala-Leu(P)-(O)-Phe-OMe
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 0P1
_pdbe_chem_comp_synonyms.name Cbz-Ala-Ala-Leu(P)-(O)-Phe-OMe
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0P1 C1 C 5.598 5.250 1
0P1 O1 O 4.299 4.500 2
0P1 O2 O 5.598 6.750 3
0P1 C2 C 4.299 7.500 4
0P1 C3 C 4.299 9.000 5
0P1 C4 C 3.000 9.750 6
0P1 C5 C 3.000 11.250 7
0P1 C6 C 4.299 12.000 8
0P1 C7 C 5.598 11.250 9
0P1 C8 C 5.598 9.750 10
0P1 N N 6.897 4.500 11
0P1 CA C 6.897 3.000 12
0P1 C C 8.196 2.250 13
0P1 O O 9.495 3.000 14
0P1 CB C 5.598 2.250 15
0P1 N1 N 8.196 0.750 16
0P1 CA1 C 9.495 0.000 17
0P1 C9 C 9.495 -1.500 18
0P1 O3 O 8.196 -2.250 19
0P1 CB1 C 10.794 0.750 20
0P1 CA2 C 10.794 -3.750 21
0P1 CB2 C 12.093 -4.500 22
0P1 CG C 13.392 -3.750 23
0P1 CD1 C 14.691 -4.500 24
0P1 CD2 C 13.392 -2.250 25
0P1 N2 N 10.794 -2.250 26
0P1 P P 9.495 -4.500 27
0P1 O11 O 8.745 -3.201 28
0P1 O21 O 10.245 -5.799 29
0P1 CA3 C 8.196 -6.750 30
0P1 CB3 C 6.897 -7.500 31
0P1 CG1 C 6.897 -9.000 32
0P1 CD11 C 5.598 -9.750 33
0P1 CD21 C 8.196 -9.750 34
0P1 CE1 C 5.598 -11.250 35
0P1 CE2 C 8.196 -11.250 36
0P1 CZ C 6.897 -12.000 37
0P1 CC C 9.495 -7.500 38
0P1 CS C 12.093 -7.500 39
0P1 OP O 8.196 -5.250 40
0P1 OS O 10.794 -6.750 41
0P1 O4 O 9.495 -9.000 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0P1 C1 O1 DOUBLE NONE 1
0P1 C1 O2 SINGLE NONE 2
0P1 O2 C2 SINGLE NONE 3
0P1 C2 C3 SINGLE NONE 4
0P1 C3 C4 DOUBLE NONE 5
0P1 C3 C8 SINGLE NONE 6
0P1 C4 C5 SINGLE NONE 7
0P1 C5 C6 DOUBLE NONE 8
0P1 C6 C7 SINGLE NONE 9
0P1 C7 C8 DOUBLE NONE 10
0P1 N CA SINGLE NONE 11
0P1 CA C SINGLE NONE 12
0P1 CA CB SINGLE BEGINDASH 13
0P1 C O DOUBLE NONE 14
0P1 N1 CA1 SINGLE NONE 15
0P1 CA1 C9 SINGLE NONE 16
0P1 CA1 CB1 SINGLE BEGINWEDGE 17
0P1 C9 O3 DOUBLE NONE 18
0P1 CA2 CB2 SINGLE BEGINWEDGE 19
0P1 CA2 N2 SINGLE NONE 20
0P1 CA2 P SINGLE NONE 21
0P1 CB2 CG SINGLE NONE 22
0P1 CG CD1 SINGLE NONE 23
0P1 CG CD2 SINGLE NONE 24
0P1 P O11 DOUBLE NONE 25
0P1 P O21 SINGLE BEGINDASH 26
0P1 CA3 CB3 SINGLE BEGINDASH 27
0P1 CA3 CC SINGLE NONE 28
0P1 CA3 OP SINGLE NONE 29
0P1 CB3 CG1 SINGLE NONE 30
0P1 CG1 CD11 DOUBLE NONE 31
0P1 CG1 CD21 SINGLE NONE 32
0P1 CD11 CE1 SINGLE NONE 33
0P1 CD21 CE2 DOUBLE NONE 34
0P1 CE1 CZ DOUBLE NONE 35
0P1 CE2 CZ SINGLE NONE 36
0P1 CC OS SINGLE NONE 37
0P1 CC O4 DOUBLE NONE 38
0P1 CS OS SINGLE NONE 39
0P1 C1 N SINGLE NONE 40
0P1 C N1 SINGLE NONE 41
0P1 C9 N2 SINGLE NONE 42
0P1 P OP SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0P1 MurckoScaffold S1 scaffold 'O=C(CNC(=O)CNC(=O)OCc1ccccc1)NC[PH](=O)OCCc1ccccc1' InChI=1S/C21H26N3O6P/c25-19(14-23-21(27)29-15-18-9-5-2-6-10-18)22-13-20(26)24-16-31(28)30-12-11-17-7-3-1-4-8-17/h1-10,31H,11-16H2,(H,22,25)(H,23,27)(H,24,26) PSTIOLCZGYGTTP-UHFFFAOYSA-N
0P1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
0P1 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
0P1 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0P1 C1 S1 1
0P1 O1 S1 1
0P1 O2 S1 1
0P1 C2 S1 1
0P1 C3 S1 1
0P1 C4 S1 1
0P1 C5 S1 1
0P1 C6 S1 1
0P1 C7 S1 1
0P1 C8 S1 1
0P1 N S1 1
0P1 CA S1 1
0P1 C S1 1
0P1 O S1 1
0P1 N1 S1 1
0P1 CA1 S1 1
0P1 C9 S1 1
0P1 O3 S1 1
0P1 CA2 S1 1
0P1 N2 S1 1
0P1 P S1 1
0P1 O11 S1 1
0P1 CA3 S1 1
0P1 CB3 S1 1
0P1 CG1 S1 1
0P1 CD11 S1 1
0P1 CD21 S1 1
0P1 CE1 S1 1
0P1 CE2 S1 1
0P1 CZ S1 1
0P1 OP S1 1
0P1 N1 F1 1
0P1 C F1 1
0P1 O F1 1
0P1 CA F1 1
0P1 N2 F1 2
0P1 C9 F1 2
0P1 O3 F1 2
0P1 CA1 F1 2
0P1 O F2 1
0P1 C F2 1
0P1 CA F2 1
0P1 N F2 1
0P1 O3 F2 2
0P1 C9 F2 2
0P1 CA1 F2 2
0P1 N1 F2 2
0P1 C3 F3 1
0P1 C4 F3 1
0P1 C5 F3 1
0P1 C6 F3 1
0P1 C7 F3 1
0P1 C8 F3 1
0P1 CG1 F3 2
0P1 CD11 F3 2
0P1 CE1 F3 2
0P1 CZ F3 2
0P1 CE2 F3 2
0P1 CD21 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 0P1
_pdbe_chem_comp_rdkit_properties.exactmw 605.250
_pdbe_chem_comp_rdkit_properties.amw 605.625
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 82
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.448
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 302.046
_pdbe_chem_comp_rdkit_properties.tpsa 169.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.171
_pdbe_chem_comp_rdkit_properties.CrippenMR 154.543
_pdbe_chem_comp_rdkit_properties.chi0v 20.858
_pdbe_chem_comp_rdkit_properties.chi1v 11.493
_pdbe_chem_comp_rdkit_properties.chi2v 4.647
_pdbe_chem_comp_rdkit_properties.chi3v 4.647
_pdbe_chem_comp_rdkit_properties.chi4v 2.835
_pdbe_chem_comp_rdkit_properties.chi0n 59.963
_pdbe_chem_comp_rdkit_properties.chi1n 29.700
_pdbe_chem_comp_rdkit_properties.chi2n 3.494
_pdbe_chem_comp_rdkit_properties.chi3n 3.494
_pdbe_chem_comp_rdkit_properties.chi4n 1.925
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.730
_pdbe_chem_comp_rdkit_properties.kappa1 8.460
_pdbe_chem_comp_rdkit_properties.kappa2 16.647
_pdbe_chem_comp_rdkit_properties.kappa3 11.636
_pdbe_chem_comp_rdkit_properties.Phi 3.353
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0P1 UniChem PDBe 0P1
0P1 UniChem ZINC ZINC000026491770
0P1 UniChem PubChem 5496819
0P1 UniChem Nikkaji J357.362A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0P1 C1 5.512 2.089 1.282 ETKDGv3 1
0P1 O1 5.871 0.889 1.436 ETKDGv3 2
0P1 O2 6.378 3.020 0.697 ETKDGv3 3
0P1 C2 7.655 2.673 0.165 ETKDGv3 4
0P1 C3 7.497 1.866 -1.095 ETKDGv3 5
0P1 C4 7.004 2.434 -2.209 ETKDGv3 6
0P1 C5 6.819 1.630 -3.436 ETKDGv3 7
0P1 C6 7.135 0.330 -3.440 ETKDGv3 8
0P1 C7 7.670 -0.304 -2.217 ETKDGv3 9
0P1 C8 7.842 0.422 -1.105 ETKDGv3 10
0P1 N 4.210 2.512 1.702 ETKDGv3 11
0P1 CA 3.222 1.571 2.239 ETKDGv3 12
0P1 C 2.738 0.652 1.149 ETKDGv3 13
0P1 O 2.389 1.134 0.036 ETKDGv3 14
0P1 CB 2.038 2.323 2.850 ETKDGv3 15
0P1 N1 2.645 -0.761 1.384 ETKDGv3 16
0P1 CA1 2.134 -1.687 0.370 ETKDGv3 17
0P1 C9 0.658 -1.477 0.168 ETKDGv3 18
0P1 O3 0.200 -1.409 -1.004 ETKDGv3 19
0P1 CB1 2.400 -3.137 0.781 ETKDGv3 20
0P1 CA2 -1.668 -1.196 1.168 ETKDGv3 21
0P1 CB2 -2.411 -2.099 2.174 ETKDGv3 22
0P1 CG -2.124 -3.608 1.982 ETKDGv3 23
0P1 CD1 -2.672 -4.135 0.647 ETKDGv3 24
0P1 CD2 -2.730 -4.406 3.143 ETKDGv3 25
0P1 N2 -0.222 -1.389 1.299 ETKDGv3 26
0P1 P -2.058 0.573 1.440 ETKDGv3 27
0P1 O11 -2.376 0.834 2.896 ETKDGv3 28
0P1 O21 -0.692 1.480 1.022 ETKDGv3 29
0P1 CA3 -4.564 0.482 0.806 ETKDGv3 30
0P1 CB3 -5.706 1.504 0.662 ETKDGv3 31
0P1 CG1 -5.802 2.081 -0.730 ETKDGv3 32
0P1 CD11 -6.611 1.527 -1.652 ETKDGv3 33
0P1 CD21 -4.959 3.243 -1.108 ETKDGv3 34
0P1 CE1 -6.664 2.076 -3.023 ETKDGv3 35
0P1 CE2 -5.007 3.736 -2.352 ETKDGv3 36
0P1 CZ -5.902 3.124 -3.356 ETKDGv3 37
0P1 CC -4.818 -0.710 -0.076 ETKDGv3 38
0P1 CS -4.486 -1.835 -2.254 ETKDGv3 39
0P1 OP -3.344 1.101 0.442 ETKDGv3 40
0P1 OS -4.249 -0.762 -1.352 ETKDGv3 41
0P1 O4 -5.583 -1.631 0.323 ETKDGv3 42
0P1 H21 8.210 3.607 -0.067 ETKDGv3 43
0P1 H22 8.245 2.118 0.927 ETKDGv3 44
0P1 H41 6.732 3.483 -2.220 ETKDGv3 45
0P1 H51 6.425 2.096 -4.330 ETKDGv3 46
0P1 H61 6.999 -0.260 -4.337 ETKDGv3 47
0P1 H71 7.921 -1.357 -2.223 ETKDGv3 48
0P1 H81 8.232 -0.052 -0.213 ETKDGv3 49
0P1 H 3.964 3.522 1.591 ETKDGv3 50
0P1 HA 3.699 0.978 3.050 ETKDGv3 51
0P1 HB1 1.298 1.603 3.263 ETKDGv3 52
0P1 HB2 1.538 2.957 2.086 ETKDGv3 53
0P1 HB3 2.392 2.975 3.677 ETKDGv3 54
0P1 H1 2.945 -1.132 2.315 ETKDGv3 55
0P1 HA1 2.672 -1.503 -0.587 ETKDGv3 56
0P1 HB11 1.887 -3.375 1.738 ETKDGv3 57
0P1 HB21 2.034 -3.832 -0.006 ETKDGv3 58
0P1 HB31 3.492 -3.298 0.911 ETKDGv3 59
0P1 HA2 -1.997 -1.445 0.139 ETKDGv3 60
0P1 HB12 -2.104 -1.805 3.202 ETKDGv3 61
0P1 HB22 -3.505 -1.930 2.101 ETKDGv3 62
0P1 HG -1.025 -3.779 2.000 ETKDGv3 63
0P1 HD11 -3.755 -3.904 0.549 ETKDGv3 64
0P1 HD12 -2.124 -3.687 -0.207 ETKDGv3 65
0P1 HD13 -2.536 -5.235 0.582 ETKDGv3 66
0P1 HD21 -2.496 -5.487 3.032 ETKDGv3 67
0P1 HD22 -2.304 -4.063 4.110 ETKDGv3 68
0P1 HD23 -3.834 -4.279 3.172 ETKDGv3 69
0P1 HN2 0.194 -1.365 2.258 ETKDGv3 70
0P1 HO2 -0.975 2.424 1.118 ETKDGv3 71
0P1 HA3 -4.586 0.153 1.870 ETKDGv3 72
0P1 HB13 -5.537 2.331 1.385 ETKDGv3 73
0P1 HB23 -6.671 1.029 0.950 ETKDGv3 74
0P1 HD1 -7.224 0.668 -1.406 ETKDGv3 75
0P1 HD2 -4.298 3.695 -0.379 ETKDGv3 76
0P1 HE1 -7.318 1.624 -3.758 ETKDGv3 77
0P1 HE2 -4.390 4.582 -2.626 ETKDGv3 78
0P1 HZ -5.938 3.525 -4.361 ETKDGv3 79
0P1 HS1 -4.135 -2.790 -1.810 ETKDGv3 80
0P1 HS2 -5.570 -1.903 -2.485 ETKDGv3 81
0P1 HS3 -3.928 -1.650 -3.195 ETKDGv3 82
#