data_0QW
#
_chem_comp.id 0QW
_chem_comp.name (2-hydroxyphenyl)(pyrrolidin-1-yl)methanethione
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H13 N O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-04-18
_chem_comp.pdbx_modified_date 2012-05-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 207.292
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0QW
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4EPT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0QW C8 C8 C 0 1 N N N N N N 23.331 40.199 12.789 2.827 -0.359 0.127 C8 0QW 1
0QW C9 C9 C 0 1 N N N N N N 23.482 38.936 13.700 3.697 0.912 0.212 C9 0QW 2
0QW C10 C10 C 0 1 N N N N N N 24.931 38.990 14.207 2.814 1.985 -0.480 C10 0QW 3
0QW C11 C11 C 0 1 N N N N N N 25.361 40.462 14.126 1.395 1.550 -0.038 C11 0QW 4
0QW N1 N1 N 0 1 N N N N N N 24.353 41.169 13.280 1.433 0.076 -0.040 N1 0QW 5
0QW C7 C7 C 0 1 N N N N N N 24.299 42.504 13.059 0.366 -0.737 -0.175 C7 0QW 6
0QW S1 S1 S 0 1 N N N N N N 23.010 43.210 12.074 0.590 -2.430 -0.288 S1 0QW 7
0QW C6 C6 C 0 1 Y N N N N N 25.230 43.384 13.690 -0.992 -0.168 -0.224 C6 0QW 8
0QW C5 C5 C 0 1 Y N N N N N 26.196 44.053 12.943 -1.601 0.092 -1.455 C5 0QW 9
0QW C4 C4 C 0 1 Y N N N N N 27.080 44.972 13.516 -2.872 0.623 -1.494 C4 0QW 10
0QW C3 C3 C 0 1 Y N N N N N 26.995 45.218 14.890 -3.550 0.901 -0.318 C3 0QW 11
0QW C2 C2 C 0 1 Y N N N N N 26.013 44.564 15.687 -2.960 0.649 0.905 C2 0QW 12
0QW C1 C1 C 0 1 Y N N N N N 25.126 43.636 15.064 -1.684 0.109 0.963 C1 0QW 13
0QW O1 O1 O 0 1 N N N N N N 24.167 42.942 15.823 -1.105 -0.144 2.164 O1 0QW 14
0QW H1 H1 H 0 1 N N N N N N 22.321 40.624 12.885 3.132 -0.961 -0.729 H1 0QW 15
0QW H2 H2 H 0 1 N N N N N N 23.521 39.939 11.737 2.927 -0.938 1.045 H2 0QW 16
0QW H3 H3 H 0 1 N N N N N N 22.775 38.978 14.542 3.888 1.181 1.251 H3 0QW 17
0QW H4 H4 H 0 1 N N N N N N 23.308 38.017 13.121 4.633 0.776 -0.330 H4 0QW 18
0QW H5 H5 H 0 1 N N N N N N 24.984 38.634 15.246 3.050 2.983 -0.111 H5 0QW 19
0QW H6 H6 H 0 1 N N N N N N 25.580 38.368 13.573 2.919 1.936 -1.564 H6 0QW 20
0QW H7 H7 H 0 1 N N N N N N 26.358 40.539 13.668 1.179 1.923 0.963 H7 0QW 21
0QW H8 H8 H 0 1 N N N N N N 25.385 40.904 15.133 0.649 1.913 -0.746 H8 0QW 22
0QW H9 H9 H 0 1 N N N N N N 26.265 43.855 11.884 -1.076 -0.122 -2.374 H9 0QW 23
0QW H10 H10 H 0 1 N N N N N N 27.814 45.482 12.910 -3.341 0.825 -2.445 H10 0QW 24
0QW H11 H11 H 0 1 N N N N N N 27.682 45.912 15.352 -4.545 1.317 -0.358 H11 0QW 25
0QW H12 H12 H 0 1 N N N N N N 25.941 44.767 16.745 -3.495 0.869 1.817 H12 0QW 26
0QW H13 H13 H 0 1 N N N N N N 24.219 43.220 16.730 -0.597 0.597 2.520 H13 0QW 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0QW S1 C7 DOUB N N 1
0QW C8 N1 SING N N 2
0QW C8 C9 SING N N 3
0QW C5 C4 DOUB Y N 4
0QW C5 C6 SING Y N 5
0QW C7 N1 SING N N 6
0QW C7 C6 SING N N 7
0QW N1 C11 SING N N 8
0QW C4 C3 SING Y N 9
0QW C6 C1 DOUB Y N 10
0QW C9 C10 SING N N 11
0QW C11 C10 SING N N 12
0QW C3 C2 DOUB Y N 13
0QW C1 C2 SING Y N 14
0QW C1 O1 SING N N 15
0QW C8 H1 SING N N 16
0QW C8 H2 SING N N 17
0QW C9 H3 SING N N 18
0QW C9 H4 SING N N 19
0QW C10 H5 SING N N 20
0QW C10 H6 SING N N 21
0QW C11 H7 SING N N 22
0QW C11 H8 SING N N 23
0QW C5 H9 SING N N 24
0QW C4 H10 SING N N 25
0QW C3 H11 SING N N 26
0QW C2 H12 SING N N 27
0QW O1 H13 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0QW SMILES ACDLabs 12.01 S=C(c1c(O)cccc1)N2CCCC2
0QW InChI InChI 1.03 InChI=1S/C11H13NOS/c13-10-6-2-1-5-9(10)11(14)12-7-3-4-8-12/h1-2,5-6,13H,3-4,7-8H2
0QW InChIKey InChI 1.03 QIKLOVZAPGSYNO-UHFFFAOYSA-N
0QW SMILES_CANONICAL CACTVS 3.370 Oc1ccccc1C(=S)N2CCCC2
0QW SMILES CACTVS 3.370 Oc1ccccc1C(=S)N2CCCC2
0QW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(c(c1)C(=S)N2CCCC2)O
0QW SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(c(c1)C(=S)N2CCCC2)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0QW "SYSTEMATIC NAME" ACDLabs 12.01 (2-hydroxyphenyl)(pyrrolidin-1-yl)methanethione
0QW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2-hydroxyphenyl)-pyrrolidin-1-yl-methanethione
#
_pdbx_chem_comp_audit.comp_id 0QW
_pdbx_chem_comp_audit.action_type 'Create component'
_pdbx_chem_comp_audit.date 2012-04-18
_pdbx_chem_comp_audit.processing_site RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0QW C8 C 9.073 1.113 1
0QW C9 C 10.076 2.228 2
0QW C10 C 9.326 3.527 3
0QW C11 C 7.859 3.215 4
0QW N1 N 7.702 1.723 5
0QW C7 C 6.404 0.973 6
0QW S1 S 5.104 1.723 7
0QW C6 C 6.404 -0.527 8
0QW C5 C 7.702 -1.277 9
0QW C4 C 7.702 -2.777 10
0QW C3 C 6.404 -3.527 11
0QW C2 C 5.104 -2.777 12
0QW C1 C 5.104 -1.277 13
0QW O1 O 3.805 -0.527 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0QW S1 C7 DOUBLE NONE 1
0QW C8 N1 SINGLE NONE 2
0QW C8 C9 SINGLE NONE 3
0QW C5 C4 DOUBLE NONE 4
0QW C5 C6 SINGLE NONE 5
0QW C7 N1 SINGLE NONE 6
0QW C7 C6 SINGLE NONE 7
0QW N1 C11 SINGLE NONE 8
0QW C4 C3 SINGLE NONE 9
0QW C6 C1 DOUBLE NONE 10
0QW C9 C10 SINGLE NONE 11
0QW C11 C10 SINGLE NONE 12
0QW C3 C2 DOUBLE NONE 13
0QW C1 C2 SINGLE NONE 14
0QW C1 O1 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
0QW MurckoScaffold S1 scaffold S=C(c1ccccc1)N1CCCC1 InChI=1S/C11H13NS/c13-11(12-8-4-5-9-12)10-6-2-1-3-7-10/h1-3,6-7H,4-5,8-9H2 RTZUSCLEISSKNQ-UHFFFAOYSA-N
0QW phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
0QW C8 S1 1
0QW C9 S1 1
0QW C10 S1 1
0QW C11 S1 1
0QW N1 S1 1
0QW C7 S1 1
0QW S1 S1 1
0QW C6 S1 1
0QW C5 S1 1
0QW C4 S1 1
0QW C3 S1 1
0QW C2 S1 1
0QW C1 S1 1
0QW C6 F1 1
0QW C5 F1 1
0QW C4 F1 1
0QW C3 F1 1
0QW C2 F1 1
0QW C1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 0QW
_pdbe_chem_comp_rdkit_properties.exactmw 207.072
_pdbe_chem_comp_rdkit_properties.amw 207.298
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.364
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 107.514
_pdbe_chem_comp_rdkit_properties.tpsa 23.470
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.646
_pdbe_chem_comp_rdkit_properties.CrippenMR 59.738
_pdbe_chem_comp_rdkit_properties.chi0v 7.580
_pdbe_chem_comp_rdkit_properties.chi1v 3.987
_pdbe_chem_comp_rdkit_properties.chi2v 1.855
_pdbe_chem_comp_rdkit_properties.chi3v 1.855
_pdbe_chem_comp_rdkit_properties.chi4v 1.096
_pdbe_chem_comp_rdkit_properties.chi0n 19.764
_pdbe_chem_comp_rdkit_properties.chi1n 9.987
_pdbe_chem_comp_rdkit_properties.chi2n 1.468
_pdbe_chem_comp_rdkit_properties.chi3n 1.468
_pdbe_chem_comp_rdkit_properties.chi4n 0.861
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.090
_pdbe_chem_comp_rdkit_properties.kappa1 2.529
_pdbe_chem_comp_rdkit_properties.kappa2 3.964
_pdbe_chem_comp_rdkit_properties.kappa3 1.727
_pdbe_chem_comp_rdkit_properties.Phi 0.716
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
0QW UniChem ChEMBL CHEMBL1606182
0QW UniChem PDBe 0QW
0QW UniChem ZINC ZINC000013130318
0QW UniChem SureChEMBL SCHEMBL20177314
0QW UniChem Nikkaji J541.940I
0QW UniChem MedChemExpress HY-18674
0QW UniChem 'Probes And Drugs' PD101129
0QW UniChem PubChem 551134
0QW UniChem eMolecules 2302929
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0QW C8 2.509 -0.745 0.935 ETKDGv3 1
0QW C9 3.474 0.137 0.154 ETKDGv3 2
0QW C10 2.729 0.541 -1.115 ETKDGv3 3
0QW C11 1.249 0.383 -0.794 ETKDGv3 4
0QW N1 1.191 -0.465 0.386 ETKDGv3 5
0QW C7 -0.027 -1.054 0.883 ETKDGv3 6
0QW S1 0.022 -2.356 1.883 ETKDGv3 7
0QW C6 -1.344 -0.534 0.466 ETKDGv3 8
0QW C5 -2.282 -1.425 -0.261 ETKDGv3 9
0QW C4 -3.478 -0.971 -0.653 ETKDGv3 10
0QW C3 -3.874 0.420 -0.359 ETKDGv3 11
0QW C2 -3.039 1.228 0.304 ETKDGv3 12
0QW C1 -1.714 0.732 0.748 ETKDGv3 13
0QW O1 -0.868 1.574 1.469 ETKDGv3 14
0QW H1 2.759 -1.817 0.783 ETKDGv3 15
0QW H2 2.539 -0.496 2.018 ETKDGv3 16
0QW H3 4.416 -0.403 -0.083 ETKDGv3 17
0QW H4 3.712 1.046 0.748 ETKDGv3 18
0QW H5 3.007 -0.149 -1.942 ETKDGv3 19
0QW H6 2.972 1.584 -1.412 ETKDGv3 20
0QW H7 0.714 -0.094 -1.643 ETKDGv3 21
0QW H8 0.799 1.374 -0.572 ETKDGv3 22
0QW H9 -1.998 -2.445 -0.486 ETKDGv3 23
0QW H10 -4.158 -1.622 -1.187 ETKDGv3 24
0QW H11 -4.841 0.784 -0.681 ETKDGv3 25
0QW H12 -3.335 2.247 0.521 ETKDGv3 26
0QW H13 -1.135 2.526 1.689 ETKDGv3 27
#