data_0XC
#
_chem_comp.id 0XC
_chem_comp.name "(2E)-6-amino-2-iminohexanoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C6 H12 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-09-11
_chem_comp.pdbx_modified_date 2013-12-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 144.172
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 0XC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4H1A
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0XC O O O 0 1 N N N N N N -5.498 -13.510 -25.443 -3.804 -0.460 0.011 O 0XC 1
0XC C C C 0 1 N N N N N N -6.578 -12.851 -25.806 -2.692 0.300 0.001 C 0XC 2
0XC OXT OXT O 0 1 N N N N N N -7.594 -13.146 -26.534 -2.784 1.510 -0.009 OXT 0XC 3
0XC CA CA C 0 1 N N N N N N -6.539 -11.414 -25.362 -1.356 -0.342 0.002 CA 0XC 4
0XC N N N 0 1 N N N N N N -5.416 -11.065 -24.626 -1.259 -1.618 0.012 N 0XC 5
0XC CB CB C 0 1 N N N N N N -7.500 -10.367 -25.778 -0.112 0.508 -0.009 CB 0XC 6
0XC CG CG C 0 1 N N N N N N -7.495 -9.215 -24.760 1.123 -0.395 -0.006 CG 0XC 7
0XC CD CD C 0 1 N N N N N N -8.575 -9.513 -23.692 2.386 0.468 -0.017 CD 0XC 8
0XC CE CE C 0 1 N N N N N N -8.056 -9.112 -22.323 3.621 -0.435 -0.014 CE 0XC 9
0XC NZ NZ N 0 1 N N N N N N -9.146 -9.133 -21.366 4.834 0.393 -0.024 NZ 0XC 10
0XC H1 H1 H 0 1 N N N N N N -5.516 -14.381 -25.822 -4.653 0.004 0.010 H1 0XC 11
0XC H3 H3 H 0 1 N N N N N N -5.377 -10.082 -24.446 -0.385 -2.039 0.013 H3 0XC 12
0XC H6 H6 H 0 1 N N N N N N -7.212 -9.981 -26.767 -0.105 1.130 -0.905 H6 0XC 13
0XC H7 H7 H 0 1 N N N N N N -8.510 -10.800 -25.833 -0.099 1.145 0.875 H7 0XC 14
0XC H8 H8 H 0 1 N N N N N N -6.507 -9.144 -24.282 1.116 -1.017 0.889 H8 0XC 15
0XC H9 H9 H 0 1 N N N N N N -7.725 -8.267 -25.268 1.110 -1.032 -0.891 H9 0XC 16
0XC H10 H10 H 0 1 N N N N N N -9.486 -8.940 -23.921 2.394 1.090 -0.912 H10 0XC 17
0XC H11 H11 H 0 1 N N N N N N -8.808 -10.588 -23.696 2.399 1.104 0.868 H11 0XC 18
0XC H12 H12 H 0 1 N N N N N N -7.276 -9.819 -22.005 3.614 -1.057 0.882 H12 0XC 19
0XC H13 H13 H 0 1 N N N N N N -7.633 -8.098 -22.374 3.608 -1.072 -0.898 H13 0XC 20
0XC H14 H14 H 0 1 N N N N N N -8.804 -8.869 -20.464 4.839 1.038 0.752 H14 0XC 21
0XC H15 H15 H 0 1 N N N N N N -9.855 -8.490 -21.655 5.664 -0.181 -0.023 H15 0XC 22
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0XC OXT C DOUB N N 1
0XC C O SING N N 2
0XC C CA SING N N 3
0XC CB CA SING N N 4
0XC CB CG SING N N 5
0XC CA N DOUB N N 6
0XC CG CD SING N N 7
0XC CD CE SING N N 8
0XC CE NZ SING N N 9
0XC O H1 SING N N 10
0XC N H3 SING N N 11
0XC CB H6 SING N N 12
0XC CB H7 SING N N 13
0XC CG H8 SING N N 14
0XC CG H9 SING N N 15
0XC CD H10 SING N N 16
0XC CD H11 SING N N 17
0XC CE H12 SING N N 18
0XC CE H13 SING N N 19
0XC NZ H14 SING N N 20
0XC NZ H15 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0XC SMILES ACDLabs 12.01 O=C(O)C(=[N@H])CCCCN
0XC InChI InChI 1.03 InChI=1S/C6H12N2O2/c7-4-2-1-3-5(8)6(9)10/h8H,1-4,7H2,(H,9,10)/b8-5+
0XC InChIKey InChI 1.03 ONJCPSHPCDMDIU-VMPITWQZSA-N
0XC SMILES_CANONICAL CACTVS 3.370 NCCCCC(=N)C(O)=O
0XC SMILES CACTVS 3.370 NCCCCC(=N)C(O)=O
0XC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\CCCCN)/C(=O)O"
0XC SMILES "OpenEye OEToolkits" 1.7.6 C(CCN)CC(=N)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0XC "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-6-amino-2-iminohexanoic acid"
0XC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "6-azanyl-2-azanylidene-hexanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0XC 'Create component' 2012-09-11 RCSB
0XC 'Initial release' 2013-12-11 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
0XC O O 1.692 -3.674 1
0XC C C 1.690 -2.174 2
0XC OXT O 2.989 -1.423 3
0XC CA C 0.391 -1.425 4
0XC N N -0.908 -2.176 5
0XC CB C 0.390 0.075 6
0XC CG C -0.910 0.824 7
0XC CD C -0.911 2.324 8
0XC CE C -2.211 3.073 9
0XC NZ N -2.212 4.573 10
0XC H3 H -2.207 -1.427 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
0XC OXT C DOUBLE NONE 1
0XC C O SINGLE NONE 2
0XC C CA SINGLE ENDUPRIGHT 3
0XC CB CA SINGLE ENDDOWNRIGHT 4
0XC CB CG SINGLE NONE 5
0XC CA N DOUBLE NONE 6
0XC CG CD SINGLE NONE 7
0XC CD CE SINGLE NONE 8
0XC CE NZ SINGLE NONE 9
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id 0XC
_pdbe_chem_comp_rdkit_properties.exactmw 144.090
_pdbe_chem_comp_rdkit_properties.amw 144.174
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 22
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.667
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 76.665
_pdbe_chem_comp_rdkit_properties.tpsa 87.170
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.220
_pdbe_chem_comp_rdkit_properties.CrippenMR 38.268
_pdbe_chem_comp_rdkit_properties.chi0v 4.711
_pdbe_chem_comp_rdkit_properties.chi1v 2.105
_pdbe_chem_comp_rdkit_properties.chi2v 0.493
_pdbe_chem_comp_rdkit_properties.chi3v 0.493
_pdbe_chem_comp_rdkit_properties.chi4v 0.169
_pdbe_chem_comp_rdkit_properties.chi0n 16.711
_pdbe_chem_comp_rdkit_properties.chi1n 7.855
_pdbe_chem_comp_rdkit_properties.chi2n 0.493
_pdbe_chem_comp_rdkit_properties.chi3n 0.493
_pdbe_chem_comp_rdkit_properties.chi4n 0.169
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.900
_pdbe_chem_comp_rdkit_properties.kappa1 1.478
_pdbe_chem_comp_rdkit_properties.kappa2 4.931
_pdbe_chem_comp_rdkit_properties.kappa3 4.027
_pdbe_chem_comp_rdkit_properties.Phi 0.729
#
_pdbe_chem_comp_external_mappings.comp_id 0XC
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id 0XC
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
0XC O 4.061 -0.517 -1.079 ETKDGv3 1
0XC C 2.966 -0.055 -0.355 ETKDGv3 2
0XC OXT 2.831 1.182 -0.152 ETKDGv3 3
0XC CA 1.972 -1.010 0.165 ETKDGv3 4
0XC N 2.110 -2.270 -0.106 ETKDGv3 5
0XC CB 0.771 -0.530 0.941 ETKDGv3 6
0XC CG -0.380 -0.182 -0.009 ETKDGv3 7
0XC CD -1.603 0.321 0.770 ETKDGv3 8
0XC CE -2.827 0.549 -0.134 ETKDGv3 9
0XC NZ -2.646 1.674 -1.051 ETKDGv3 10
0XC H1 4.752 0.127 -1.445 ETKDGv3 11
0XC H3 1.419 -2.986 0.216 ETKDGv3 12
0XC H6 0.444 -1.321 1.652 ETKDGv3 13
0XC H7 1.045 0.362 1.545 ETKDGv3 14
0XC H8 -0.659 -1.087 -0.594 ETKDGv3 15
0XC H9 -0.037 0.606 -0.714 ETKDGv3 16
0XC H10 -1.350 1.263 1.305 ETKDGv3 17
0XC H11 -1.880 -0.437 1.536 ETKDGv3 18
0XC H12 -3.709 0.759 0.510 ETKDGv3 19
0XC H13 -3.052 -0.373 -0.713 ETKDGv3 20
0XC H14 -1.930 1.421 -1.769 ETKDGv3 21
0XC H15 -2.296 2.504 -0.519 ETKDGv3 22
#