data_12U
#
_chem_comp.id 12U
_chem_comp.name N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H33 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms (2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cycloheptylamino)ethanoyl]pyrrolidine-2-carboxamide
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-01-15
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 399.530
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 12U
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ZFS
_chem_comp.pdbx_subcomponent_list "CGH PRO 00S"
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
12U C14 C14 C 0 1 N N N N N N 28.633 -1.033 16.723 -1.939 0.691 -0.102 C14 CGH 1
12U O32 O32 O 0 1 N N N N N N 27.526 -0.784 17.209 -1.271 -0.293 0.137 O32 CGH 2
12U C5 C5 C 0 1 N N N N N N 29.783 -1.245 17.673 -3.441 0.589 -0.148 C5 CGH 3
12U N21 N21 N 0 1 N N N N N N 29.533 -0.500 18.937 -3.847 -0.795 0.128 N21 CGH 4
12U C49 C49 C 0 1 N N N N N N 29.854 0.944 18.928 -5.310 -0.932 0.092 C49 CGH 5
12U C48 C48 C 0 1 N N N N N N 31.279 1.199 19.294 -5.739 -2.135 0.957 C48 CGH 6
12U C47 C47 C 0 1 N N N N N N 31.391 1.280 20.799 -7.141 -2.069 1.342 C47 CGH 7
12U C46 C46 C 0 1 N N N N N N 31.225 2.648 21.389 -8.087 -2.099 0.125 C46 CGH 8
12U C52 C52 C 0 1 N N N N N N 29.908 3.221 21.143 -8.138 -0.720 -0.475 C52 CGH 9
12U C51 C51 C 0 1 N N N N N N 29.417 2.777 19.842 -7.129 -0.539 -1.625 C51 CGH 10
12U C50 C50 C 0 1 N N N N N N 28.769 1.496 19.565 -5.759 -1.177 -1.323 C50 CGH 11
12U N1 N1 N 0 1 N N N N N N 28.702 -1.040 15.427 -1.336 1.875 -0.327 N PRO 12
12U C1 C1 C 0 1 N N S N N N 27.744 -0.794 14.631 0.119 2.097 -0.407 CA PRO 13
12U C7 C7 C 0 1 N N N N N N 26.610 -1.709 14.500 0.838 1.227 0.592 C PRO 14
12U O22 O22 O 0 1 N N N N N N 26.679 -2.894 14.824 0.286 0.902 1.622 O PRO 15
12U C2 C2 C 0 1 N N N N N N 28.343 -0.620 13.231 0.312 3.593 -0.054 CB PRO 16
12U C3 C3 C 0 1 N N N N N N 29.659 -1.335 13.278 -0.931 4.234 -0.728 CG PRO 17
12U C4 C4 C 0 1 N N N N N N 29.993 -1.317 14.763 -2.021 3.159 -0.535 CD PRO 18
12U N23 N23 N 0 1 N N N N N N 25.470 -1.326 14.011 2.092 0.804 0.338 N23 00S 19
12U C24 C24 C 0 1 N N N N N N 24.347 -2.135 13.657 2.789 -0.047 1.306 C16 00S 20
12U C25 C25 C 0 1 Y N N N N N 23.252 -2.012 14.709 4.164 -0.377 0.787 C17 00S 21
12U C30 C30 C 0 1 Y N N N N N 23.309 -2.408 16.024 4.356 -1.506 0.011 C22 00S 22
12U C29 C29 C 0 1 Y N N N N N 22.186 -2.211 16.855 5.612 -1.810 -0.472 C21 00S 23
12U C28 C28 C 0 1 Y N N N N N 20.965 -1.634 16.479 6.692 -0.982 -0.168 C24 00S 24
12U C9 C9 C 0 1 N N N N N N 19.840 -1.482 17.486 8.044 -1.306 -0.678 C27 00S 25
12U N10 N10 N 0 1 N N N N N N 19.016 -0.467 17.291 9.051 -0.530 -0.392 N35 00S 26
12U N11 N11 N 0 1 N N N N N N 19.682 -2.311 18.507 8.237 -2.427 -1.455 N34 00S 27
12U C27 C27 C 0 1 Y N N N N N 20.913 -1.238 15.166 6.494 0.153 0.619 C19 00S 28
12U C26 C26 C 0 1 Y N N N N N 22.030 -1.431 14.326 5.232 0.449 1.092 C18 00S 29
12U H5 H5 H 0 1 N N N N N N 29.881 -2.318 17.895 -3.873 1.251 0.602 H5 CGH 30
12U H5A H5A H 0 1 N N N N N N 30.711 -0.877 17.210 -3.795 0.881 -1.137 H5A CGH 31
12U HN21 HN21 H 0 0 N N N N N N 28.558 -0.584 19.142 -3.408 -1.436 -0.515 HN21 CGH 32
12U H49 H49 H 0 1 N N N N N N 29.924 1.484 17.972 -5.772 -0.023 0.474 H49 CGH 33
12U H48 H48 H 0 1 N N N N N N 31.910 0.379 18.920 -5.571 -3.053 0.394 H48 CGH 34
12U H48A H48A H 0 0 N N N N N N 31.616 2.145 18.844 -5.126 -2.159 1.858 H48A CGH 35
12U H47 H47 H 0 1 N N N N N N 30.604 0.640 21.224 -7.370 -2.916 1.988 H47 CGH 36
12U H47A H47A H 0 0 N N N N N N 32.416 0.965 21.045 -7.311 -1.147 1.899 H47A CGH 37
12U H46 H46 H 0 1 N N N N N N 31.372 2.575 22.477 -7.711 -2.806 -0.614 H46 CGH 38
12U H46A H46A H 0 0 N N N N N N 31.966 3.306 20.910 -9.086 -2.396 0.445 H46A CGH 39
12U H52 H52 H 0 1 N N N N N N 29.213 2.891 21.929 -9.143 -0.537 -0.856 H52 CGH 40
12U H52A H52A H 0 0 N N N N N N 29.979 4.319 21.152 -7.920 0.012 0.303 H52A CGH 41
12U H51 H51 H 0 1 N N N N N N 28.665 3.529 19.563 -7.538 -0.996 -2.526 H51 CGH 42
12U H51A H51A H 0 0 N N N N N N 30.367 2.643 19.304 -6.989 0.526 -1.806 H51A CGH 43
12U H50 H50 H 0 1 N N N N N N 27.863 1.567 18.946 -5.018 -0.760 -2.006 H50 CGH 44
12U H50A H50A H 0 0 N N N N N N 28.351 0.945 20.421 -5.826 -2.252 -1.492 H50A CGH 45
12U H1 H1 H 0 1 N N N N N N 27.282 0.087 15.100 0.481 1.895 -1.415 HA PRO 46
12U H2 H2 H 0 1 N N N N N N 27.685 -1.056 12.465 0.294 3.746 1.025 HB2 PRO 47
12U H2A H2A H 0 1 N N N N N N 28.462 0.441 12.964 1.234 3.981 -0.487 HB3 PRO 48
12U H3 H3 H 0 1 N N N N N N 29.582 -2.361 12.888 -1.208 5.160 -0.223 HG2 PRO 49
12U H3A H3A H 0 1 N N N N N N 30.432 -0.865 12.653 -0.746 4.412 -1.787 HG3 PRO 50
12U H4 H4 H 0 1 N N N N N N 30.409 -2.282 15.089 -2.630 3.400 0.336 HD2 PRO 51
12U H4A H4A H 0 1 N N N N N N 30.758 -0.566 15.009 -2.649 3.105 -1.425 HD3 PRO 52
12U HN23 HN23 H 0 0 N N N N N N 25.365 -0.342 13.864 2.534 1.064 -0.486 HN23 00S 53
12U H24 H24 H 0 1 N N N N N N 23.954 -1.802 12.685 2.875 0.480 2.256 H16 00S 54
12U H24A H24A H 0 0 N N N N N N 24.668 -3.185 13.596 2.225 -0.968 1.451 H16A 00S 55
12U H30 H30 H 0 1 N N N N N N 24.205 -2.866 16.417 3.519 -2.149 -0.220 H22 00S 56
12U H29 H29 H 0 1 N N N N N N 22.276 -2.536 17.881 5.760 -2.690 -1.081 H21 00S 57
12U HN10 HN10 H 0 0 N N N N N N 18.331 -0.486 18.019 9.936 -0.743 -0.726 HN35 00S 58
12U HN11 HN11 H 0 0 N N N N N N 20.410 -2.995 18.460 7.487 -3.004 -1.668 HN34 00S 59
12U HN1A HN1A H 0 0 N N N N N N 18.963 -2.262 19.200 9.122 -2.639 -1.789 HN3A 00S 60
12U H27 H27 H 0 1 N N N N N N 20.017 -0.779 14.776 7.326 0.798 0.858 H19 00S 61
12U H26 H26 H 0 1 N N N N N N 21.939 -1.104 13.301 5.077 1.327 1.702 H18 00S 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
12U O22 C7 DOUB N N 1
12U C7 N23 SING N N 2
12U C7 C1 SING N N 3
12U N23 C24 SING N N 4
12U C24 C25 SING N N 5
12U C25 C26 DOUB Y N 6
12U C25 C30 SING Y N 7
12U C26 C27 SING Y N 8
12U C27 C28 DOUB Y N 9
12U C28 C9 SING N N 10
12U C28 C29 SING Y N 11
12U C9 N10 DOUB N N 12
12U C9 N11 SING N N 13
12U C29 C30 DOUB Y N 14
12U C1 C2 SING N N 15
12U C1 N1 SING N N 16
12U C2 C3 SING N N 17
12U C3 C4 SING N N 18
12U C4 N1 SING N N 19
12U N1 C14 SING N N 20
12U C14 O32 DOUB N N 21
12U C14 C5 SING N N 22
12U C5 N21 SING N N 23
12U N21 C49 SING N N 24
12U C49 C48 SING N N 25
12U C49 C50 SING N N 26
12U C48 C47 SING N N 27
12U C47 C46 SING N N 28
12U C46 C52 SING N N 29
12U C52 C51 SING N N 30
12U C51 C50 SING N N 31
12U N23 HN23 SING N N 32
12U C24 H24 SING N N 33
12U C24 H24A SING N N 34
12U C26 H26 SING N N 35
12U C27 H27 SING N N 36
12U N10 HN10 SING N N 37
12U N11 HN11 SING N N 38
12U N11 HN1A SING N N 39
12U C29 H29 SING N N 40
12U C30 H30 SING N N 41
12U C1 H1 SING N N 42
12U C2 H2 SING N N 43
12U C2 H2A SING N N 44
12U C3 H3 SING N N 45
12U C3 H3A SING N N 46
12U C4 H4 SING N N 47
12U C4 H4A SING N N 48
12U C5 H5 SING N N 49
12U C5 H5A SING N N 50
12U N21 HN21 SING N N 51
12U C49 H49 SING N N 52
12U C48 H48 SING N N 53
12U C48 H48A SING N N 54
12U C47 H47 SING N N 55
12U C47 H47A SING N N 56
12U C46 H46 SING N N 57
12U C46 H46A SING N N 58
12U C52 H52 SING N N 59
12U C52 H52A SING N N 60
12U C51 H51 SING N N 61
12U C51 H51A SING N N 62
12U C50 H50 SING N N 63
12U C50 H50A SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
12U SMILES ACDLabs 10.04 O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)CNC2CCCCCC2)CCC3
12U InChI InChI 1.03 InChI=1S/C22H33N5O2/c23-21(24)17-11-9-16(10-12-17)14-26-22(29)19-8-5-13-27(19)20(28)15-25-18-6-3-1-2-4-7-18/h9-12,18-19,25H,1-8,13-15H2,(H3,23,24)(H,26,29)/t19-/m0/s1
12U InChIKey InChI 1.03 BYTJPDBCLWUEBU-IBGZPJMESA-N
12U SMILES_CANONICAL CACTVS 3.385 NC(=N)c1ccc(CNC(=O)[C@@H]2CCCN2C(=O)CNC3CCCCCC3)cc1
12U SMILES CACTVS 3.385 NC(=N)c1ccc(CNC(=O)[CH]2CCCN2C(=O)CNC3CCCCCC3)cc1
12U SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCCN2C(=O)CNC3CCCCCC3)\N"
12U SMILES "OpenEye OEToolkits" 1.7.5 c1cc(ccc1CNC(=O)C2CCCN2C(=O)CNC3CCCCCC3)C(=N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
12U "SYSTEMATIC NAME" ACDLabs 10.04 N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide
12U "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cycloheptylamino)ethanoyl]pyrrolidine-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
12U 'Create component' 2008-01-15 PDBJ
12U 'Modify subcomponent list' 2010-11-15 RCSB
12U 'Modify aromatic_flag' 2011-06-04 RCSB
12U 'Modify descriptor' 2011-06-04 RCSB
12U 'Modify descriptor' 2012-01-05 RCSB
12U 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 12U
_pdbx_chem_comp_synonyms.name
(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cycloheptylamino)ethanoyl]pyrrolidine-2-carboxamide
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 12U
_pdbe_chem_comp_drugbank_details.drugbank_id DB06853
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name N-cycloheptylglycyl-N-(4-carbamimidoylbenzyl)-L-prolinamide
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id 12U
_pdbe_chem_comp_synonyms.name
'(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[2-(cycloheptylamino)ethanoyl]pyrrolidine-2-carboxamide'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 12U
_pdbe_chem_comp_drugbank_classification.drugbank_id DB06853
_pdbe_chem_comp_drugbank_classification.parent Dipeptides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
12U DB06853 Trypsin-1 Humans P07477 unknown 1
12U DB06853 Prothrombin Humans P00734 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
12U C14 C 10.036 0.344 1
12U O32 O 10.786 1.643 2
12U C5 C 8.536 0.344 3
12U N21 N 7.786 1.643 4
12U C49 C 6.286 1.643 5
12U C48 C 5.635 0.292 6
12U C47 C 4.173 -0.042 7
12U C46 C 3.000 0.893 8
12U C52 C 3.000 2.393 9
12U C51 C 4.173 3.329 10
12U C50 C 5.635 2.995 11
12U N1 N 10.786 -0.955 12
12U C1 C 12.278 -1.111 13
12U C7 C 13.281 0.003 14
12U O22 O 12.818 1.430 15
12U C2 C 12.590 -2.579 16
12U C3 C 11.290 -3.329 17
12U C4 C 10.176 -2.325 18
12U N23 N 14.749 -0.308 19
12U C24 C 15.752 0.806 20
12U C25 C 17.220 0.494 21
12U C30 C 18.223 1.609 22
12U C29 C 19.691 1.297 23
12U C28 C 20.154 -0.130 24
12U C9 C 21.621 -0.441 25
12U N10 N 22.625 0.673 26
12U N11 N 22.085 -1.868 27
12U C27 C 19.150 -1.244 28
12U C26 C 17.683 -0.932 29
12U HN10 H 24.092 0.362 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
12U O22 C7 DOUBLE NONE 1
12U C7 N23 SINGLE NONE 2
12U C1 C7 SINGLE BEGINDASH 3
12U N23 C24 SINGLE NONE 4
12U C24 C25 SINGLE NONE 5
12U C25 C26 SINGLE NONE 6
12U C25 C30 DOUBLE NONE 7
12U C26 C27 DOUBLE NONE 8
12U C27 C28 SINGLE NONE 9
12U C28 C9 SINGLE ENDUPRIGHT 10
12U C28 C29 DOUBLE NONE 11
12U C9 N10 DOUBLE NONE 12
12U C9 N11 SINGLE ENDUPRIGHT 13
12U C29 C30 SINGLE NONE 14
12U C1 C2 SINGLE NONE 15
12U C1 N1 SINGLE NONE 16
12U C2 C3 SINGLE NONE 17
12U C3 C4 SINGLE NONE 18
12U C4 N1 SINGLE NONE 19
12U N1 C14 SINGLE NONE 20
12U C14 O32 DOUBLE NONE 21
12U C14 C5 SINGLE NONE 22
12U C5 N21 SINGLE NONE 23
12U N21 C49 SINGLE NONE 24
12U C49 C48 SINGLE NONE 25
12U C49 C50 SINGLE NONE 26
12U C48 C47 SINGLE NONE 27
12U C47 C46 SINGLE NONE 28
12U C46 C52 SINGLE NONE 29
12U C52 C51 SINGLE NONE 30
12U C51 C50 SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
12U MurckoScaffold S1 scaffold 'O=C(NCc1ccccc1)[C@@H]1CCCN1C(=O)CNC1CCCCCC1' InChI=1S/C21H31N3O2/c25-20(16-22-18-11-6-1-2-7-12-18)24-14-8-13-19(24)21(26)23-15-17-9-4-3-5-10-17/h3-5,9-10,18-19,22H,1-2,6-8,11-16H2,(H,23,26)/t19-/m0/s1 QXQSUFCZNQTXHP-IBGZPJMESA-N
12U amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
12U peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
12U phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
12U C14 S1 1
12U O32 S1 1
12U C5 S1 1
12U N21 S1 1
12U C49 S1 1
12U C48 S1 1
12U C47 S1 1
12U C46 S1 1
12U C52 S1 1
12U C51 S1 1
12U C50 S1 1
12U N1 S1 1
12U C1 S1 1
12U C7 S1 1
12U O22 S1 1
12U C2 S1 1
12U C3 S1 1
12U C4 S1 1
12U N23 S1 1
12U C24 S1 1
12U C25 S1 1
12U C30 S1 1
12U C29 S1 1
12U C28 S1 1
12U C27 S1 1
12U C26 S1 1
12U N1 F1 1
12U C14 F1 1
12U O32 F1 1
12U C5 F1 1
12U N23 F1 2
12U C7 F1 2
12U O22 F1 2
12U C1 F1 2
12U O32 F2 1
12U C14 F2 1
12U C5 F2 1
12U N21 F2 1
12U O22 F2 2
12U C7 F2 2
12U C1 F2 2
12U N1 F2 2
12U C25 F3 1
12U C26 F3 1
12U C27 F3 1
12U C28 F3 1
12U C29 F3 1
12U C30 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 12U
_pdbe_chem_comp_rdkit_properties.exactmw 399.263
_pdbe_chem_comp_rdkit_properties.amw 399.539
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 62
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.591
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 219.121
_pdbe_chem_comp_rdkit_properties.tpsa 111.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.781
_pdbe_chem_comp_rdkit_properties.CrippenMR 113.001
_pdbe_chem_comp_rdkit_properties.chi0v 14.053
_pdbe_chem_comp_rdkit_properties.chi1v 7.421
_pdbe_chem_comp_rdkit_properties.chi2v 2.908
_pdbe_chem_comp_rdkit_properties.chi3v 2.908
_pdbe_chem_comp_rdkit_properties.chi4v 1.680
_pdbe_chem_comp_rdkit_properties.chi0n 47.053
_pdbe_chem_comp_rdkit_properties.chi1n 23.657
_pdbe_chem_comp_rdkit_properties.chi2n 2.908
_pdbe_chem_comp_rdkit_properties.chi3n 2.908
_pdbe_chem_comp_rdkit_properties.chi4n 1.680
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.410
_pdbe_chem_comp_rdkit_properties.kappa1 4.590
_pdbe_chem_comp_rdkit_properties.kappa2 10.391
_pdbe_chem_comp_rdkit_properties.kappa3 6.032
_pdbe_chem_comp_rdkit_properties.Phi 1.645
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
12U UniChem DrugBank DB06853
12U UniChem PDBe 12U
12U UniChem ZINC ZINC000039024438
12U UniChem PubChem 25113614
12U UniChem 'Probes And Drugs' PD005859
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
12U C14 -1.455 -0.960 0.682 ETKDGv3 1
12U O32 -1.379 -2.209 0.525 ETKDGv3 2
12U C5 -2.664 -0.398 1.391 ETKDGv3 3
12U N21 -3.902 -0.608 0.621 ETKDGv3 4
12U C49 -3.999 0.254 -0.579 ETKDGv3 5
12U C48 -4.931 -0.376 -1.638 ETKDGv3 6
12U C47 -6.411 -0.446 -1.222 ETKDGv3 7
12U C46 -7.113 0.916 -1.349 ETKDGv3 8
12U C52 -7.021 1.803 -0.095 ETKDGv3 9
12U C51 -5.691 1.757 0.678 ETKDGv3 10
12U C50 -4.435 1.696 -0.212 ETKDGv3 11
12U N1 -0.403 -0.116 0.173 ETKDGv3 12
12U C1 0.700 -0.626 -0.632 ETKDGv3 13
12U C7 1.631 -1.468 0.203 ETKDGv3 14
12U O22 2.074 -2.548 -0.273 ETKDGv3 15
12U C2 1.413 0.612 -1.178 ETKDGv3 16
12U C3 0.957 1.775 -0.302 ETKDGv3 17
12U C4 -0.351 1.329 0.337 ETKDGv3 18
12U N23 2.051 -1.028 1.504 ETKDGv3 19
12U C24 3.131 -1.683 2.237 ETKDGv3 20
12U C25 4.453 -1.386 1.586 ETKDGv3 21
12U C30 4.969 -0.146 1.629 ETKDGv3 22
12U C29 6.251 0.154 0.959 ETKDGv3 23
12U C28 6.911 -0.805 0.281 ETKDGv3 24
12U C9 8.203 -0.525 -0.393 ETKDGv3 25
12U N10 9.035 -1.497 -0.601 ETKDGv3 26
12U N11 8.537 0.797 -0.838 ETKDGv3 27
12U C27 6.336 -2.175 0.237 ETKDGv3 28
12U C26 5.177 -2.448 0.849 ETKDGv3 29
12U H5 -2.765 -0.927 2.363 ETKDGv3 30
12U H5A -2.540 0.672 1.649 ETKDGv3 31
12U HN21 -3.954 -1.620 0.355 ETKDGv3 32
12U H49 -3.004 0.326 -1.070 ETKDGv3 33
12U H48 -4.832 0.182 -2.596 ETKDGv3 34
12U H48A -4.577 -1.407 -1.856 ETKDGv3 35
12U H47 -6.523 -0.863 -0.198 ETKDGv3 36
12U H47A -6.917 -1.154 -1.914 ETKDGv3 37
12U H46 -6.721 1.474 -2.228 ETKDGv3 38
12U H46A -8.190 0.739 -1.558 ETKDGv3 39
12U H52 -7.835 1.515 0.607 ETKDGv3 40
12U H52A -7.221 2.853 -0.401 ETKDGv3 41
12U H51 -5.712 0.913 1.399 ETKDGv3 42
12U H51A -5.634 2.678 1.299 ETKDGv3 43
12U H50 -3.603 2.189 0.332 ETKDGv3 44
12U H50A -4.584 2.298 -1.135 ETKDGv3 45
12U H1 0.298 -1.228 -1.478 ETKDGv3 46
12U H2 2.522 0.514 -1.174 ETKDGv3 47
12U H2A 1.081 0.794 -2.224 ETKDGv3 48
12U H3 1.717 1.962 0.489 ETKDGv3 49
12U H3A 0.821 2.702 -0.901 ETKDGv3 50
12U H4 -1.210 1.799 -0.187 ETKDGv3 51
12U H4A -0.364 1.599 1.415 ETKDGv3 52
12U HN23 1.612 -0.181 1.929 ETKDGv3 53
12U H24 2.942 -2.778 2.286 ETKDGv3 54
12U H24A 3.147 -1.307 3.284 ETKDGv3 55
12U H30 4.450 0.648 2.152 ETKDGv3 56
12U H29 6.650 1.156 1.050 ETKDGv3 57
12U HN10 9.951 -1.345 -1.079 ETKDGv3 58
12U HN11 7.833 1.567 -0.836 ETKDGv3 59
12U HN1A 9.474 0.996 -1.253 ETKDGv3 60
12U H27 6.845 -2.965 -0.301 ETKDGv3 61
12U H26 4.769 -3.449 0.800 ETKDGv3 62
#