data_13L
#
_chem_comp.id 13L
_chem_comp.name
'3-{4-amino-1-[(3R)-1-propanoylpiperidin-3-yl]-1H-pyrazolo[3,4-d]pyrimidin-3-yl}-N-[4-(propan-2-yl)phenyl]benzamide'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C29 H33 N7 O2'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-10-03
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 511.618
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 13L
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4HCU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
13L C4 C4 C 0 1 Y N N N N N 2.582 12.700 14.514 -8.289 -0.792 0.761 C4 13L 1
13L C7 C7 C 0 1 Y N N N N N 1.125 12.694 16.837 -6.171 -0.258 -0.942 C7 13L 2
13L C6 C6 C 0 1 Y N N N N N 2.368 11.508 15.183 -7.031 -1.277 1.059 C6 13L 3
13L C9 C9 C 0 1 Y N N N N N 2.979 3.617 24.399 2.399 3.843 0.688 C9 13L 4
13L C13 C13 C 0 1 Y N N N N N 2.065 13.889 14.986 -8.490 -0.043 -0.384 C13 13L 5
13L C20 C20 C 0 1 N N N N N N 8.233 7.492 22.578 6.057 -0.293 -2.829 C20 13L 6
13L C21 C21 C 0 1 N N N N N N 6.699 7.480 22.579 4.645 -0.189 -2.249 C21 13L 7
13L C8 C8 C 0 1 Y N N N N N 2.151 8.121 19.859 -1.132 -0.476 0.315 C8 13L 8
13L C18 C18 C 0 1 N N N N N N 1.618 10.010 18.351 -3.600 -0.770 0.205 C18 13L 9
13L C16 C16 C 0 1 Y N N N N N 3.829 5.135 23.017 2.792 1.641 0.148 C16 13L 10
13L C19 C19 C 0 1 N N N N N N 8.907 4.139 22.399 7.972 -0.650 0.115 C19 13L 11
13L C26 C26 C 0 1 N N N N N N 2.536 16.392 14.979 -9.821 2.012 -0.777 C26 13L 12
13L C1 C1 C 0 1 Y N N N N N 0.359 6.476 18.538 -0.872 -2.863 1.721 C1 13L 13
13L C2 C2 C 0 1 Y N N N N N 1.105 5.995 19.601 0.250 -2.115 1.419 C2 13L 14
13L C3 C3 C 0 1 Y N N N N N 0.524 7.781 18.109 -2.123 -2.426 1.337 C3 13L 15
13L C5 C5 C 0 1 Y N N N N N 1.333 13.882 16.158 -7.432 0.223 -1.234 C5 13L 16
13L C10 C10 C 0 1 Y N N N N N 2.608 5.344 22.397 1.493 1.323 0.588 C10 13L 17
13L C11 C11 C 0 1 Y N N N N N 1.999 6.814 20.293 0.126 -0.918 0.715 C11 13L 18
13L C12 C12 C 0 1 Y N N N N N 1.413 8.610 18.789 -2.261 -1.231 0.626 C12 13L 19
13L C14 C14 C 0 1 Y N N N N N 1.638 11.508 16.354 -5.966 -1.012 0.207 C14 13L 20
13L C15 C15 C 0 1 Y N N N N N 2.858 6.297 21.363 1.332 -0.118 0.392 C15 13L 21
13L C17 C17 C 0 1 Y N N N N N 1.530 4.597 22.888 0.681 2.355 1.086 C17 13L 22
13L C22 C22 C 0 1 N N N N N N 8.770 6.514 21.536 6.880 -1.272 -1.986 C22 13L 23
13L C23 C23 C 0 1 N N N N N N 6.793 5.105 21.663 5.525 -0.622 0.048 C23 13L 24
13L C24 C24 C 0 1 N N R N N N 6.144 6.060 22.667 4.717 0.349 -0.818 C24 13L 25
13L C25 C25 C 0 1 N N N N N N 10.952 3.656 21.066 10.427 -0.593 0.459 C25 13L 26
13L C27 C27 C 0 1 N N N N N N 1.315 15.330 13.066 -10.322 -0.075 -2.055 C27 13L 27
13L C28 C28 C 0 1 N N N N N N 10.408 4.228 22.356 9.307 -0.878 -0.544 C28 13L 28
13L C29 C29 C 0 1 N N N N N N 2.348 15.130 14.172 -9.864 0.484 -0.707 C29 13L 29
13L N30 N30 N 0 1 Y N N N N N 4.076 4.311 24.041 3.197 2.909 0.218 N30 13L 30
13L N31 N31 N 0 1 Y N N N N N 1.736 3.734 23.898 1.176 3.588 1.116 N31 13L 31
13L N32 N32 N 0 1 Y N N N N N 4.144 6.691 21.396 2.451 -0.571 -0.122 N32 13L 32
13L N33 N33 N 0 1 Y N N N N N 4.704 5.998 22.416 3.363 0.478 -0.275 N33 13L 33
13L N34 N34 N 0 1 N N N N N N 8.233 5.182 21.784 6.834 -0.841 -0.582 N34 13L 34
13L N35 N35 N 0 1 N N N N N N 0.248 4.710 22.349 -0.601 2.095 1.530 N35 13L 35
13L N36 N36 N 0 1 N N N N N N 1.417 10.264 17.019 -4.691 -1.502 0.506 N36 13L 36
13L O37 O37 O 0 1 N N N N N N 1.965 10.878 19.140 -3.718 0.271 -0.414 O37 13L 37
13L O38 O38 O 0 1 N N N N N N 8.378 3.179 22.965 7.921 -0.294 1.274 O38 13L 38
13L H1 H1 H 0 1 N N N N N N 3.165 12.700 13.605 -9.119 -1.002 1.420 H1 13L 39
13L H2 H2 H 0 1 N N N N N N 0.555 12.696 17.754 -5.345 -0.050 -1.606 H2 13L 40
13L H3 H3 H 0 1 N N N N N N 2.769 10.585 14.792 -6.875 -1.862 1.953 H3 13L 41
13L H4 H4 H 0 1 N N N N N N 3.112 2.881 25.178 2.761 4.860 0.730 H4 13L 42
13L H5 H5 H 0 1 N N N N N N 8.599 7.199 23.573 6.003 -0.654 -3.856 H5 13L 43
13L H6 H6 H 0 1 N N N N N N 8.588 8.506 22.341 6.531 0.689 -2.813 H6 13L 44
13L H7 H7 H 0 1 N N N N N N 6.339 8.057 23.443 4.050 0.488 -2.862 H7 13L 45
13L H8 H8 H 0 1 N N N N N N 6.338 7.946 21.650 4.181 -1.175 -2.243 H8 13L 46
13L H9 H9 H 0 1 N N N N N N 2.854 8.769 20.360 -1.232 0.451 -0.230 H9 13L 47
13L H10 H10 H 0 1 N N N N N N 3.284 16.217 15.766 -10.815 2.393 -1.010 H10 13L 48
13L H11 H11 H 0 1 N N N N N N 2.881 17.201 14.319 -9.495 2.411 0.184 H11 13L 49
13L H12 H12 H 0 1 N N N N N N 1.579 16.678 15.440 -9.122 2.320 -1.554 H12 13L 50
13L H13 H13 H 0 1 N N N N N N -0.353 5.832 18.043 -0.770 -3.790 2.266 H13 13L 51
13L H14 H14 H 0 1 N N N N N N 0.993 4.964 19.901 1.227 -2.463 1.723 H14 13L 52
13L H15 H15 H 0 1 N N N N N N -0.029 8.152 17.259 -2.997 -3.015 1.575 H15 13L 53
13L H16 H16 H 0 1 N N N N N N 0.923 14.804 16.544 -7.592 0.809 -2.128 H16 13L 54
13L H17 H17 H 0 1 N N N N N N 9.868 6.482 21.597 6.460 -2.273 -2.074 H17 13L 55
13L H18 H18 H 0 1 N N N N N N 8.468 6.848 20.532 7.913 -1.275 -2.333 H18 13L 56
13L H19 H19 H 0 1 N N N N N N 6.495 5.388 20.643 5.664 -0.197 1.042 H19 13L 57
13L H20 H20 H 0 1 N N N N N N 6.462 4.076 21.869 4.994 -1.571 0.125 H20 13L 58
13L H21 H21 H 0 1 N N N N N N 6.345 5.678 23.679 5.203 1.325 -0.821 H21 13L 59
13L H22 H22 H 0 1 N N N N N N 12.049 3.735 21.063 10.360 0.442 0.794 H22 13L 60
13L H23 H23 H 0 1 N N N N N N 10.660 2.599 20.982 10.326 -1.260 1.315 H23 13L 61
13L H24 H24 H 0 1 N N N N N N 10.542 4.218 20.214 11.393 -0.758 -0.019 H24 13L 62
13L H25 H25 H 0 1 N N N N N N 1.201 14.396 12.497 -10.353 -1.164 -2.005 H25 13L 63
13L H26 H26 H 0 1 N N N N N N 0.349 15.608 13.513 -11.316 0.306 -2.288 H26 13L 64
13L H27 H27 H 0 1 N N N N N N 1.651 16.131 12.391 -9.623 0.233 -2.832 H27 13L 65
13L H28 H28 H 0 1 N N N N N N 10.825 3.664 23.203 9.375 -1.913 -0.879 H28 13L 66
13L H29 H29 H 0 1 N N N N N N 10.707 5.283 22.435 9.408 -0.212 -1.401 H29 13L 67
13L H30 H30 H 0 1 N N N N N N 3.305 14.948 13.662 -10.563 0.176 0.071 H30 13L 68
13L H31 H31 H 0 1 N N N N N N -0.372 4.088 22.828 -0.961 1.196 1.475 H31 13L 69
13L H32 H32 H 0 1 N N N N N N -0.076 5.650 22.455 -1.142 2.812 1.897 H32 13L 70
13L H33 H33 H 0 1 N N N N N N 1.084 9.505 16.459 -4.592 -2.368 0.930 H33 13L 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
13L C27 C29 SING N N 1
13L C29 C26 SING N N 2
13L C29 C13 SING N N 3
13L C4 C13 DOUB Y N 4
13L C4 C6 SING Y N 5
13L C13 C5 SING Y N 6
13L C6 C14 DOUB Y N 7
13L C5 C7 DOUB Y N 8
13L C14 C7 SING Y N 9
13L C14 N36 SING N N 10
13L N36 C18 SING N N 11
13L C3 C1 DOUB Y N 12
13L C3 C12 SING Y N 13
13L C18 C12 SING N N 14
13L C18 O37 DOUB N N 15
13L C1 C2 SING Y N 16
13L C12 C8 DOUB Y N 17
13L C2 C11 DOUB Y N 18
13L C8 C11 SING Y N 19
13L C11 C15 SING N N 20
13L C25 C28 SING N N 21
13L C15 N32 DOUB Y N 22
13L C15 C10 SING Y N 23
13L N32 N33 SING Y N 24
13L C22 N34 SING N N 25
13L C22 C20 SING N N 26
13L C23 N34 SING N N 27
13L C23 C24 SING N N 28
13L N34 C19 SING N N 29
13L N35 C17 SING N N 30
13L C28 C19 SING N N 31
13L C10 C17 DOUB Y N 32
13L C10 C16 SING Y N 33
13L C19 O38 DOUB N N 34
13L N33 C24 SING N N 35
13L N33 C16 SING Y N 36
13L C20 C21 SING N N 37
13L C21 C24 SING N N 38
13L C17 N31 SING Y N 39
13L C16 N30 DOUB Y N 40
13L N31 C9 DOUB Y N 41
13L N30 C9 SING Y N 42
13L C4 H1 SING N N 43
13L C7 H2 SING N N 44
13L C6 H3 SING N N 45
13L C9 H4 SING N N 46
13L C20 H5 SING N N 47
13L C20 H6 SING N N 48
13L C21 H7 SING N N 49
13L C21 H8 SING N N 50
13L C8 H9 SING N N 51
13L C26 H10 SING N N 52
13L C26 H11 SING N N 53
13L C26 H12 SING N N 54
13L C1 H13 SING N N 55
13L C2 H14 SING N N 56
13L C3 H15 SING N N 57
13L C5 H16 SING N N 58
13L C22 H17 SING N N 59
13L C22 H18 SING N N 60
13L C23 H19 SING N N 61
13L C23 H20 SING N N 62
13L C24 H21 SING N N 63
13L C25 H22 SING N N 64
13L C25 H23 SING N N 65
13L C25 H24 SING N N 66
13L C27 H25 SING N N 67
13L C27 H26 SING N N 68
13L C27 H27 SING N N 69
13L C28 H28 SING N N 70
13L C28 H29 SING N N 71
13L C29 H30 SING N N 72
13L N35 H31 SING N N 73
13L N35 H32 SING N N 74
13L N36 H33 SING N N 75
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
13L SMILES ACDLabs 12.01 'O=C(Nc1ccc(cc1)C(C)C)c5cccc(c3nn(c2ncnc(c23)N)C4CCCN(C(=O)CC)C4)c5'
13L InChI InChI 1.03 'InChI=1S/C29H33N7O2/c1-4-24(37)35-14-6-9-23(16-35)36-28-25(27(30)31-17-32-28)26(34-36)20-7-5-8-21(15-20)29(38)33-22-12-10-19(11-13-22)18(2)3/h5,7-8,10-13,15,17-18,23H,4,6,9,14,16H2,1-3H3,(H,33,38)(H2,30,31,32)/t23-/m1/s1'
13L InChIKey InChI 1.03 OQUNLLPGZMGVNR-HSZRJFAPSA-N
13L SMILES_CANONICAL CACTVS 3.370 'CCC(=O)N1CCC[C@H](C1)n2nc(c3cccc(c3)C(=O)Nc4ccc(cc4)C(C)C)c5c(N)ncnc25'
13L SMILES CACTVS 3.370 'CCC(=O)N1CCC[CH](C1)n2nc(c3cccc(c3)C(=O)Nc4ccc(cc4)C(C)C)c5c(N)ncnc25'
13L SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'CCC(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4cccc(c4)C(=O)Nc5ccc(cc5)C(C)C)c(ncn3)N'
13L SMILES 'OpenEye OEToolkits' 1.7.6 'CCC(=O)N1CCCC(C1)n2c3c(c(n2)c4cccc(c4)C(=O)Nc5ccc(cc5)C(C)C)c(ncn3)N'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
13L 'SYSTEMATIC NAME' ACDLabs 12.01 '3-{4-amino-1-[(3R)-1-propanoylpiperidin-3-yl]-1H-pyrazolo[3,4-d]pyrimidin-3-yl}-N-[4-(propan-2-yl)phenyl]benzamide'
13L 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 '3-[4-azanyl-1-[(3R)-1-propanoylpiperidin-3-yl]pyrazolo[3,4-d]pyrimidin-3-yl]-N-(4-propan-2-ylphenyl)benzamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
13L 'Create component' 2012-10-03 RCSB
13L 'Initial release' 2012-11-09 RCSB
13L 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 13L
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C25
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 4HCU
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
13L C4 C 14.752 6.971 1
13L C7 C 13.820 4.119 2
13L C6 C 13.285 6.661 3
13L C9 C 3.000 -1.927 4
13L C13 C 15.754 5.854 5
13L C20 C 6.948 -6.352 6
13L C21 C 6.482 -4.926 7
13L C8 C 8.951 1.765 8
13L C18 C 10.885 3.500 9
13L C16 C 5.598 -1.927 10
13L C19 C 10.885 -5.854 11
13L C26 C 18.224 5.047 12
13L C1 C 6.948 3.998 13
13L C2 C 6.482 2.572 14
13L C3 C 8.415 4.308 15
13L C5 C 15.288 4.428 16
13L C10 C 5.598 -0.427 17
13L C11 C 7.483 1.456 18
13L C12 C 9.417 3.191 19
13L C14 C 12.819 5.236 20
13L C15 C 7.018 0.030 21
13L C17 C 4.299 0.323 22
13L C22 C 8.415 -6.661 23
13L C23 C 8.951 -4.119 24
13L C24 C 7.483 -3.810 25
13L C25 C 12.819 -7.589 26
13L C27 C 17.688 7.589 27
13L C28 C 11.351 -7.280 28
13L C29 C 17.222 6.163 29
13L N30 N 4.299 -2.677 30
13L N31 N 3.000 -0.427 31
13L N32 N 7.893 -1.177 32
13L N33 N 7.018 -2.384 33
13L N34 N 9.417 -5.545 34
13L N35 N 4.299 1.823 35
13L N36 N 11.351 4.926 36
13L O37 O 11.887 2.384 37
13L O38 O 11.887 -4.738 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
13L C27 C29 SINGLE NONE 1
13L C29 C26 SINGLE NONE 2
13L C29 C13 SINGLE NONE 3
13L C4 C13 DOUBLE NONE 4
13L C4 C6 SINGLE NONE 5
13L C13 C5 SINGLE NONE 6
13L C6 C14 DOUBLE NONE 7
13L C5 C7 DOUBLE NONE 8
13L C14 C7 SINGLE NONE 9
13L C14 N36 SINGLE NONE 10
13L N36 C18 SINGLE NONE 11
13L C3 C1 DOUBLE NONE 12
13L C3 C12 SINGLE NONE 13
13L C18 C12 SINGLE NONE 14
13L C18 O37 DOUBLE NONE 15
13L C1 C2 SINGLE NONE 16
13L C12 C8 DOUBLE NONE 17
13L C2 C11 DOUBLE NONE 18
13L C8 C11 SINGLE NONE 19
13L C11 C15 SINGLE NONE 20
13L C25 C28 SINGLE NONE 21
13L C15 N32 DOUBLE NONE 22
13L C15 C10 SINGLE NONE 23
13L N32 N33 SINGLE NONE 24
13L C22 N34 SINGLE NONE 25
13L C22 C20 SINGLE NONE 26
13L C23 N34 SINGLE NONE 27
13L C23 C24 SINGLE NONE 28
13L N34 C19 SINGLE NONE 29
13L N35 C17 SINGLE NONE 30
13L C28 C19 SINGLE NONE 31
13L C10 C17 DOUBLE NONE 32
13L C10 C16 SINGLE NONE 33
13L C19 O38 DOUBLE NONE 34
13L C24 N33 SINGLE BEGINWEDGE 35
13L N33 C16 SINGLE NONE 36
13L C20 C21 SINGLE NONE 37
13L C21 C24 SINGLE NONE 38
13L C17 N31 SINGLE NONE 39
13L C16 N30 DOUBLE NONE 40
13L N31 C9 DOUBLE NONE 41
13L N30 C9 SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
13L MurckoScaffold S1 scaffold 'O=C(Nc1ccccc1)c1cccc(-c2nn([C@@H]3CCCNC3)c3ncncc23)c1' InChI=1S/C23H22N6O/c30-23(27-18-8-2-1-3-9-18)17-7-4-6-16(12-17)21-20-14-25-15-26-22(20)29(28-21)19-10-5-11-24-13-19/h1-4,6-9,12,14-15,19,24H,5,10-11,13H2,(H,27,30)/t19-/m1/s1 REBSFOOWGCRMBF-LJQANCHMSA-N
13L amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
13L phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
13L pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
13L pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
13L C4 S1 1
13L C7 S1 1
13L C6 S1 1
13L C9 S1 1
13L C13 S1 1
13L C20 S1 1
13L C21 S1 1
13L C8 S1 1
13L C18 S1 1
13L C16 S1 1
13L C1 S1 1
13L C2 S1 1
13L C3 S1 1
13L C5 S1 1
13L C10 S1 1
13L C11 S1 1
13L C12 S1 1
13L C14 S1 1
13L C15 S1 1
13L C17 S1 1
13L C22 S1 1
13L C23 S1 1
13L C24 S1 1
13L N30 S1 1
13L N31 S1 1
13L N32 S1 1
13L N33 S1 1
13L N34 S1 1
13L N36 S1 1
13L O37 S1 1
13L N34 F1 1
13L C19 F1 1
13L O38 F1 1
13L C28 F1 1
13L N36 F1 2
13L C18 F1 2
13L O37 F1 2
13L C12 F1 2
13L C4 F2 1
13L C13 F2 1
13L C5 F2 1
13L C7 F2 1
13L C14 F2 1
13L C6 F2 1
13L C8 F2 2
13L C12 F2 2
13L C3 F2 2
13L C1 F2 2
13L C2 F2 2
13L C11 F2 2
13L C16 F3 1
13L C10 F3 1
13L C15 F3 1
13L N32 F3 1
13L N33 F3 1
13L C10 F4 1
13L C17 F4 1
13L N31 F4 1
13L C9 F4 1
13L N30 F4 1
13L C16 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 13L
_pdbe_chem_comp_rdkit_properties.exactmw 511.270
_pdbe_chem_comp_rdkit_properties.amw 511.630
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 71
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.345
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 268.158
_pdbe_chem_comp_rdkit_properties.tpsa 119.030
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.346
_pdbe_chem_comp_rdkit_properties.CrippenMR 143.090
_pdbe_chem_comp_rdkit_properties.chi0v 18.447
_pdbe_chem_comp_rdkit_properties.chi1v 10.015
_pdbe_chem_comp_rdkit_properties.chi2v 4.635
_pdbe_chem_comp_rdkit_properties.chi3v 4.635
_pdbe_chem_comp_rdkit_properties.chi4v 3.001
_pdbe_chem_comp_rdkit_properties.chi0n 51.447
_pdbe_chem_comp_rdkit_properties.chi1n 26.357
_pdbe_chem_comp_rdkit_properties.chi2n 4.635
_pdbe_chem_comp_rdkit_properties.chi3n 4.635
_pdbe_chem_comp_rdkit_properties.chi4n 3.001
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.270
_pdbe_chem_comp_rdkit_properties.kappa1 7.223
_pdbe_chem_comp_rdkit_properties.kappa2 10.610
_pdbe_chem_comp_rdkit_properties.kappa3 4.959
_pdbe_chem_comp_rdkit_properties.Phi 2.017
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
13L UniChem PDBe 13L
13L UniChem ZINC ZINC000098207918
13L UniChem PubChem 72200986
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
13L C4 6.041 0.974 -1.775 ETKDGv3 1
13L C7 5.544 -0.654 0.466 ETKDGv3 2
13L C6 4.929 1.298 -0.858 ETKDGv3 3
13L C9 -1.899 -3.610 2.298 ETKDGv3 4
13L C13 6.825 -0.098 -1.549 ETKDGv3 5
13L C20 -6.271 -2.468 0.785 ETKDGv3 6
13L C21 -5.832 -1.279 1.650 ETKDGv3 7
13L C8 0.803 1.383 1.869 ETKDGv3 8
13L C18 3.108 2.128 1.407 ETKDGv3 9
13L C16 -2.660 -1.417 1.949 ETKDGv3 10
13L C19 -6.182 -0.427 -2.466 ETKDGv3 11
13L C26 9.026 0.659 -2.512 ETKDGv3 12
13L C1 0.211 3.797 3.192 ETKDGv3 13
13L C2 -0.823 2.751 3.072 ETKDGv3 14
13L C3 1.432 3.597 2.682 ETKDGv3 15
13L C5 6.549 -0.952 -0.366 ETKDGv3 16
13L C10 -1.405 -0.907 2.404 ETKDGv3 17
13L C11 -0.541 1.588 2.464 ETKDGv3 18
13L C12 1.758 2.326 1.986 ETKDGv3 19
13L C14 4.696 0.536 0.227 ETKDGv3 20
13L C15 -1.581 0.554 2.314 ETKDGv3 21
13L C17 -0.475 -1.753 2.866 ETKDGv3 22
13L C22 -6.759 -1.990 -0.590 ETKDGv3 23
13L C23 -4.553 -0.737 -0.527 ETKDGv3 24
13L C24 -4.798 -0.359 0.945 ETKDGv3 25
13L C25 -6.377 1.572 -4.005 ETKDGv3 26
13L C27 7.466 -0.782 -3.887 ETKDGv3 27
13L C28 -5.549 0.861 -2.935 ETKDGv3 28
13L C29 7.971 -0.454 -2.477 ETKDGv3 29
13L N30 -2.930 -2.684 1.892 ETKDGv3 30
13L N31 -0.755 -3.168 2.763 ETKDGv3 31
13L N32 -2.782 0.840 1.889 ETKDGv3 32
13L N33 -3.529 -0.332 1.675 ETKDGv3 33
13L N34 -5.834 -1.017 -1.195 ETKDGv3 34
13L N35 0.716 -1.311 3.518 ETKDGv3 35
13L N36 3.603 0.808 1.120 ETKDGv3 36
13L O37 3.848 3.131 1.211 ETKDGv3 37
13L O38 -7.020 -1.011 -3.208 ETKDGv3 38
13L H1 6.208 1.614 -2.632 ETKDGv3 39
13L H2 5.355 -1.287 1.324 ETKDGv3 40
13L H3 4.295 2.142 -1.094 ETKDGv3 41
13L H4 -2.079 -4.674 2.237 ETKDGv3 42
13L H5 -7.088 -3.021 1.297 ETKDGv3 43
13L H6 -5.419 -3.170 0.654 ETKDGv3 44
13L H7 -5.435 -1.663 2.615 ETKDGv3 45
13L H8 -6.736 -0.681 1.901 ETKDGv3 46
13L H9 0.992 0.470 1.318 ETKDGv3 47
13L H10 8.615 1.587 -2.961 ETKDGv3 48
13L H11 9.901 0.334 -3.115 ETKDGv3 49
13L H12 9.378 0.882 -1.482 ETKDGv3 50
13L H13 -0.021 4.726 3.697 ETKDGv3 51
13L H14 -1.805 2.934 3.492 ETKDGv3 52
13L H15 2.181 4.373 2.784 ETKDGv3 53
13L H16 7.159 -1.824 -0.170 ETKDGv3 54
13L H17 -7.756 -1.513 -0.468 ETKDGv3 55
13L H18 -6.870 -2.869 -1.261 ETKDGv3 56
13L H19 -3.987 0.079 -1.021 ETKDGv3 57
13L H20 -3.916 -1.646 -0.590 ETKDGv3 58
13L H21 -5.218 0.672 0.950 ETKDGv3 59
13L H22 -7.398 1.788 -3.623 ETKDGv3 60
13L H23 -5.889 2.532 -4.275 ETKDGv3 61
13L H24 -6.450 0.945 -4.919 ETKDGv3 62
13L H25 8.307 -1.136 -4.520 ETKDGv3 63
13L H26 6.704 -1.590 -3.840 ETKDGv3 64
13L H27 7.013 0.111 -4.368 ETKDGv3 65
13L H28 -5.444 1.553 -2.071 ETKDGv3 66
13L H29 -4.540 0.642 -3.344 ETKDGv3 67
13L H30 8.477 -1.368 -2.092 ETKDGv3 68
13L H31 1.450 -2.007 3.778 ETKDGv3 69
13L H32 0.815 -0.338 3.878 ETKDGv3 70
13L H33 3.230 0.011 1.683 ETKDGv3 71
#