data_15W
#
_chem_comp.id 15W
_chem_comp.name 7-hydroxy-2-(4-methoxyphenyl)-4H-chromen-4-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H12 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "7-hydroxy-4'-methoxyflavone"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-10-18
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 268.264
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 15W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4HL5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
15W CAS CAS C 0 1 N N N N N N -1.356 -10.272 -23.371 -6.163 1.623 -0.007 CAS 15W 1
15W OAR OAR O 0 1 N N N N N N -2.527 -10.971 -22.972 -5.694 0.273 0.004 OAR 15W 2
15W CAP CAP C 0 1 Y N N N N N -2.569 -11.192 -21.620 -4.349 0.088 0.002 CAP 15W 3
15W CAO CAO C 0 1 Y N N N N N -1.441 -11.133 -20.788 -3.499 1.188 -0.003 CAO 15W 4
15W CAN CAN C 0 1 Y N N N N N -1.566 -11.377 -19.414 -2.134 1.005 -0.005 CAN 15W 5
15W CAL CAL C 0 1 Y N N N N N -3.793 -11.513 -21.046 -3.827 -1.199 0.012 CAL 15W 6
15W CAM CAM C 0 1 Y N N N N N -3.916 -11.756 -19.689 -2.463 -1.392 0.010 CAM 15W 7
15W CAK CAK C 0 1 Y N N N N N -2.813 -11.696 -18.843 -1.604 -0.289 -0.001 CAK 15W 8
15W CAI CAI C 0 1 N N N N N N -2.989 -11.944 -17.471 -0.143 -0.490 -0.002 CAI 15W 9
15W OAJ OAJ O 0 1 N N N N N N -4.283 -11.977 -17.051 0.657 0.588 -0.008 OAJ 15W 10
15W CAF CAF C 0 1 Y N N N N N -4.592 -12.211 -15.742 2.003 0.488 -0.009 CAF 15W 11
15W CAA CAA C 0 1 Y N N N N N -5.922 -12.248 -15.356 2.801 1.622 -0.014 CAA 15W 12
15W CAB CAB C 0 1 Y N N N N N -6.259 -12.484 -14.022 4.181 1.491 -0.015 CAB 15W 13
15W OAT OAT O 0 1 N N N N N N -7.572 -12.493 -13.652 4.962 2.602 -0.020 OAT 15W 14
15W CAC CAC C 0 1 Y N N N N N -5.250 -12.696 -13.083 4.772 0.230 -0.010 CAC 15W 15
15W CAD CAD C 0 1 Y N N N N N -3.916 -12.654 -13.473 3.998 -0.896 -0.006 CAD 15W 16
15W CAE CAE C 0 1 Y N N N N N -3.561 -12.409 -14.805 2.609 -0.780 -0.005 CAE 15W 17
15W CAG CAG C 0 1 N N N N N N -2.214 -12.383 -15.213 1.741 -1.974 0.000 CAG 15W 18
15W OAQ OAQ O 0 1 N N N N N N -1.265 -12.543 -14.425 2.211 -3.099 0.004 OAQ 15W 19
15W CAH CAH C 0 1 N N N N N N -1.948 -12.125 -16.555 0.343 -1.761 0.007 CAH 15W 20
15W H1 H1 H 0 1 N N N N N N -1.372 -10.121 -24.460 -5.799 2.127 -0.902 H1 15W 21
15W H2 H2 H 0 1 N N N N N N -1.322 -9.295 -22.866 -7.253 1.628 -0.004 H2 15W 22
15W H3 H3 H 0 1 N N N N N N -0.467 -10.858 -23.095 -5.795 2.142 0.878 H3 15W 23
15W H4 H4 H 0 1 N N N N N N -0.474 -10.899 -21.208 -3.909 2.187 -0.007 H4 15W 24
15W H5 H5 H 0 1 N N N N N N -0.692 -11.319 -18.783 -1.473 1.859 -0.009 H5 15W 25
15W H6 H6 H 0 1 N N N N N N -4.670 -11.574 -21.674 -4.491 -2.051 0.021 H6 15W 26
15W H7 H7 H 0 1 N N N N N N -4.886 -11.997 -19.279 -2.058 -2.393 0.018 H7 15W 27
15W H8 H8 H 0 1 N N N N N N -6.700 -12.094 -16.089 2.350 2.603 -0.018 H8 15W 28
15W H9 H9 H 0 1 N N N N N N -7.638 -12.666 -12.720 5.189 2.926 0.862 H9 15W 29
15W H10 H10 H 0 1 N N N N N N -5.505 -12.893 -12.052 5.849 0.142 -0.011 H10 15W 30
15W H11 H11 H 0 1 N N N N N N -3.142 -12.813 -12.737 4.461 -1.871 -0.003 H11 15W 31
15W H12 H12 H 0 1 N N N N N N -0.924 -12.064 -16.893 -0.335 -2.602 0.015 H12 15W 32
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
15W CAS OAR SING N N 1
15W OAR CAP SING N N 2
15W CAP CAL DOUB Y N 3
15W CAP CAO SING Y N 4
15W CAL CAM SING Y N 5
15W CAO CAN DOUB Y N 6
15W CAM CAK DOUB Y N 7
15W CAN CAK SING Y N 8
15W CAK CAI SING N N 9
15W CAI OAJ SING N N 10
15W CAI CAH DOUB N N 11
15W OAJ CAF SING N N 12
15W CAH CAG SING N N 13
15W CAF CAA DOUB Y N 14
15W CAF CAE SING Y N 15
15W CAA CAB SING Y N 16
15W CAG CAE SING N N 17
15W CAG OAQ DOUB N N 18
15W CAE CAD DOUB Y N 19
15W CAB OAT SING N N 20
15W CAB CAC DOUB Y N 21
15W CAD CAC SING Y N 22
15W CAS H1 SING N N 23
15W CAS H2 SING N N 24
15W CAS H3 SING N N 25
15W CAO H4 SING N N 26
15W CAN H5 SING N N 27
15W CAL H6 SING N N 28
15W CAM H7 SING N N 29
15W CAA H8 SING N N 30
15W OAT H9 SING N N 31
15W CAC H10 SING N N 32
15W CAD H11 SING N N 33
15W CAH H12 SING N N 34
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
15W SMILES ACDLabs 12.01 O=C1c3c(OC(=C1)c2ccc(OC)cc2)cc(O)cc3
15W InChI InChI 1.03 InChI=1S/C16H12O4/c1-19-12-5-2-10(3-6-12)15-9-14(18)13-7-4-11(17)8-16(13)20-15/h2-9,17H,1H3
15W InChIKey InChI 1.03 SQVXWIUVAILQRH-UHFFFAOYSA-N
15W SMILES_CANONICAL CACTVS 3.370 COc1ccc(cc1)C2=CC(=O)c3ccc(O)cc3O2
15W SMILES CACTVS 3.370 COc1ccc(cc1)C2=CC(=O)c3ccc(O)cc3O2
15W SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 COc1ccc(cc1)C2=CC(=O)c3ccc(cc3O2)O
15W SMILES "OpenEye OEToolkits" 1.7.6 COc1ccc(cc1)C2=CC(=O)c3ccc(cc3O2)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
15W "SYSTEMATIC NAME" ACDLabs 12.01 7-hydroxy-2-(4-methoxyphenyl)-4H-chromen-4-one
15W "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-(4-methoxyphenyl)-7-oxidanyl-chromen-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
15W 'Create component' 2012-10-18 RCSB
15W 'Initial release' 2012-10-26 RCSB
15W 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 15W
_pdbx_chem_comp_synonyms.name "7-hydroxy-4'-methoxyflavone"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
15W NSC-123414 ChEMBL 'Research Code'
15W "7-hydroxy-4'-methoxyflavone" wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
15W CAS C 16.897 -2.625 1
15W OAR O 15.598 -3.375 2
15W CAP C 14.298 -2.625 3
15W CAO C 14.298 -1.125 4
15W CAN C 12.999 -0.375 5
15W CAL C 12.999 -3.375 6
15W CAM C 11.700 -2.625 7
15W CAK C 11.700 -1.125 8
15W CAI C 10.402 -0.375 9
15W OAJ O 9.102 -1.125 10
15W CAF C 7.803 -0.375 11
15W CAA C 6.463 -1.177 12
15W CAB C 5.103 -0.406 13
15W OAT O 3.807 -1.161 14
15W CAC C 5.103 1.156 15
15W CAD C 6.463 1.927 16
15W CAE C 7.803 1.125 17
15W CAG C 9.102 1.875 18
15W OAQ O 9.102 3.375 19
15W CAH C 10.402 1.125 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
15W CAS OAR SINGLE NONE 1
15W OAR CAP SINGLE NONE 2
15W CAP CAL DOUBLE NONE 3
15W CAP CAO SINGLE NONE 4
15W CAL CAM SINGLE NONE 5
15W CAO CAN DOUBLE NONE 6
15W CAM CAK DOUBLE NONE 7
15W CAN CAK SINGLE NONE 8
15W CAK CAI SINGLE NONE 9
15W CAI OAJ SINGLE NONE 10
15W CAI CAH DOUBLE NONE 11
15W OAJ CAF SINGLE NONE 12
15W CAH CAG SINGLE NONE 13
15W CAF CAA DOUBLE NONE 14
15W CAF CAE SINGLE NONE 15
15W CAA CAB SINGLE NONE 16
15W CAG CAE SINGLE NONE 17
15W CAG OAQ DOUBLE NONE 18
15W CAE CAD DOUBLE NONE 19
15W CAB OAT SINGLE NONE 20
15W CAB CAC DOUBLE NONE 21
15W CAD CAC SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
15W MurckoScaffold S1 scaffold O=c1cc(-c2ccccc2)oc2ccccc12 InChI=1S/C15H10O2/c16-13-10-15(11-6-2-1-3-7-11)17-14-9-5-4-8-12(13)14/h1-10H VHBFFQKBGNRLFZ-UHFFFAOYSA-N
15W phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
15W CAP S1 1
15W CAO S1 1
15W CAN S1 1
15W CAL S1 1
15W CAM S1 1
15W CAK S1 1
15W CAI S1 1
15W OAJ S1 1
15W CAF S1 1
15W CAA S1 1
15W CAB S1 1
15W CAC S1 1
15W CAD S1 1
15W CAE S1 1
15W CAG S1 1
15W OAQ S1 1
15W CAH S1 1
15W CAP F1 1
15W CAL F1 1
15W CAM F1 1
15W CAK F1 1
15W CAN F1 1
15W CAO F1 1
15W CAF F1 2
15W CAA F1 2
15W CAB F1 2
15W CAC F1 2
15W CAD F1 2
15W CAE F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 15W
_pdbe_chem_comp_rdkit_properties.exactmw 268.074
_pdbe_chem_comp_rdkit_properties.amw 268.268
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 32
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.062
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 131.356
_pdbe_chem_comp_rdkit_properties.tpsa 59.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.341
_pdbe_chem_comp_rdkit_properties.CrippenMR 71.497
_pdbe_chem_comp_rdkit_properties.chi0v 9.633
_pdbe_chem_comp_rdkit_properties.chi1v 5.225
_pdbe_chem_comp_rdkit_properties.chi2v 2.345
_pdbe_chem_comp_rdkit_properties.chi3v 2.345
_pdbe_chem_comp_rdkit_properties.chi4v 1.482
_pdbe_chem_comp_rdkit_properties.chi0n 21.633
_pdbe_chem_comp_rdkit_properties.chi1n 11.133
_pdbe_chem_comp_rdkit_properties.chi2n 2.345
_pdbe_chem_comp_rdkit_properties.chi3n 2.345
_pdbe_chem_comp_rdkit_properties.chi4n 1.482
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.750
_pdbe_chem_comp_rdkit_properties.kappa1 4.664
_pdbe_chem_comp_rdkit_properties.kappa2 4.735
_pdbe_chem_comp_rdkit_properties.kappa3 2.117
_pdbe_chem_comp_rdkit_properties.Phi 1.104
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
15W UniChem ChEMBL CHEMBL16751
15W UniChem PDBe 15W
15W UniChem ZINC ZINC000005733557
15W UniChem eMolecules 737233
15W UniChem fdasrs KU5R959MO7
15W UniChem 'PubChem TPHARMA' 14972131
15W UniChem NMRShiftDB 60025685
15W UniChem ACTor 487-24-1
15W UniChem BindingDb 85573
15W UniChem 'EPA CompTox Dashboard' DTXSID20197587
15W UniChem BRENDA 246249
15W UniChem BRENDA 92088
15W UniChem 'Probes And Drugs' PD120291
15W UniChem Nikkaji J94.480G
15W UniChem SureChEMBL SCHEMBL534596
15W UniChem PubChem 5320693
15W UniChem Mcule MCULE-4757451306
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
15W CAS 6.284 -0.994 0.232 ETKDGv3 1
15W OAR 5.113 -1.667 -0.216 ETKDGv3 2
15W CAP 3.824 -1.119 -0.157 ETKDGv3 3
15W CAO 3.565 0.238 0.392 ETKDGv3 4
15W CAN 2.320 0.728 0.424 ETKDGv3 5
15W CAL 2.795 -1.847 -0.608 ETKDGv3 6
15W CAM 1.419 -1.309 -0.570 ETKDGv3 7
15W CAK 1.178 -0.074 -0.095 ETKDGv3 8
15W CAI -0.213 0.446 -0.064 ETKDGv3 9
15W OAJ -1.268 -0.482 0.037 ETKDGv3 10
15W CAF -2.614 -0.104 0.076 ETKDGv3 11
15W CAA -3.577 -1.028 0.178 ETKDGv3 12
15W CAB -4.998 -0.616 0.219 ETKDGv3 13
15W OAT -5.989 -1.590 0.326 ETKDGv3 14
15W CAC -5.317 0.688 0.154 ETKDGv3 15
15W CAD -4.253 1.709 0.040 ETKDGv3 16
15W CAE -2.964 1.329 0.003 ETKDGv3 17
15W CAG -1.848 2.281 -0.113 ETKDGv3 18
15W OAQ -2.057 3.522 -0.187 ETKDGv3 19
15W CAH -0.468 1.768 -0.144 ETKDGv3 20
15W H1 6.204 -0.770 1.317 ETKDGv3 21
15W H2 6.427 -0.054 -0.342 ETKDGv3 22
15W H3 7.164 -1.648 0.068 ETKDGv3 23
15W H4 4.376 0.839 0.783 ETKDGv3 24
15W H5 2.157 1.705 0.860 ETKDGv3 25
15W H6 2.965 -2.838 -1.008 ETKDGv3 26
15W H7 0.615 -1.926 -0.951 ETKDGv3 27
15W H8 -3.320 -2.079 0.231 ETKDGv3 28
15W H9 -6.973 -1.348 0.357 ETKDGv3 29
15W H10 -6.352 1.002 0.183 ETKDGv3 30
15W H11 -4.529 2.754 -0.013 ETKDGv3 31
15W H12 0.335 2.483 -0.262 ETKDGv3 32
#