data_1D1
#
_chem_comp.id 1D1
_chem_comp.name (7R)-8-cyclopentyl-7-ethyl-5-methyl-2-(1H-pyrrol-2-yl)-7,8-dihydropteridin-6(5H)-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C18 H23 N5 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-12-10
_chem_comp.pdbx_modified_date 2013-12-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 325.408
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1D1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4I5P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1D1 O23 O23 O 0 1 N N N N N N 13.609 4.241 10.452 -4.041 -1.453 -0.564 O23 1D1 1
1D1 C13 C13 C 0 1 N N N N N N 12.508 4.828 10.447 -2.885 -1.170 -0.334 C13 1D1 2
1D1 N12 N12 N 0 1 N N N N N N 11.326 4.100 10.172 -1.907 -2.082 -0.527 N12 1D1 3
1D1 C24 C24 C 0 1 N N N N N N 11.412 2.658 9.906 -2.233 -3.463 -0.893 C24 1D1 4
1D1 C9 C9 C 0 1 Y N N N N N 10.081 4.759 10.150 -0.576 -1.679 -0.369 C9 1D1 5
1D1 C8 C8 C 0 1 Y N N N N N 8.887 4.097 9.892 0.447 -2.609 -0.279 C8 1D1 6
1D1 N7 N7 N 0 1 Y N N N N N 7.740 4.784 9.890 1.690 -2.180 -0.115 N7 1D1 7
1D1 C14 C14 C 0 1 N N R N N N 12.517 6.295 10.672 -2.523 0.206 0.164 C14 1D1 8
1D1 C21 C21 C 0 1 N N N N N N 13.264 6.831 9.436 -2.394 0.176 1.688 C21 1D1 9
1D1 C22 C22 C 0 1 N N N N N N 12.534 6.603 8.115 -3.742 -0.199 2.306 C22 1D1 10
1D1 N15 N15 N 0 1 N N N N N N 11.199 6.953 10.691 -1.251 0.639 -0.422 N15 1D1 11
1D1 C16 C16 C 0 1 N N N N N N 11.045 8.401 10.986 -0.817 1.921 0.150 C16 1D1 12
1D1 C20 C20 C 0 1 N N N N N N 10.919 9.361 9.813 -1.972 2.942 0.094 C20 1D1 13
1D1 C19 C19 C 0 1 N N N N N N 11.260 10.726 10.415 -1.274 4.288 -0.227 C19 1D1 14
1D1 C18 C18 C 0 1 N N N N N N 12.094 10.477 11.673 -0.165 3.869 -1.224 C18 1D1 15
1D1 C17 C17 C 0 1 N N N N N N 12.147 8.970 11.886 0.331 2.510 -0.688 C17 1D1 16
1D1 C10 C10 C 0 1 Y N N N N N 10.023 6.218 10.426 -0.262 -0.317 -0.298 C10 1D1 17
1D1 N11 N11 N 0 1 Y N N N N N 8.821 6.827 10.405 1.005 0.040 -0.125 N11 1D1 18
1D1 C6 C6 C 0 1 Y N N N N N 7.698 6.118 10.145 1.958 -0.882 -0.037 C6 1D1 19
1D1 C2 C2 C 0 1 Y N N N N N 6.392 6.828 10.117 3.357 -0.450 0.155 C2 1D1 20
1D1 C3 C3 C 0 1 Y N N N N N 5.140 6.460 9.669 3.793 0.838 0.260 C3 1D1 21
1D1 C4 C4 C 0 1 Y N N N N N 4.344 7.563 9.892 5.184 0.795 0.432 C4 1D1 22
1D1 C5 C5 C 0 1 Y N N N N N 5.136 8.555 10.441 5.559 -0.504 0.428 C5 1D1 23
1D1 N1 N1 N 0 1 Y N N N N N 6.401 8.088 10.573 4.449 -1.274 0.264 N1 1D1 24
1D1 H1 H1 H 0 1 N N N N N N 12.462 2.335 9.969 -3.315 -3.573 -0.966 H1 1D1 25
1D1 H2 H2 H 0 1 N N N N N N 10.815 2.112 10.651 -1.778 -3.701 -1.854 H2 1D1 26
1D1 H3 H3 H 0 1 N N N N N N 11.024 2.447 8.899 -1.849 -4.141 -0.131 H3 1D1 27
1D1 H4 H4 H 0 1 N N N N N N 8.885 3.035 9.695 0.234 -3.666 -0.340 H4 1D1 28
1D1 H5 H5 H 0 1 N N N N N N 13.084 6.540 11.582 -3.307 0.909 -0.116 H5 1D1 29
1D1 H6 H6 H 0 1 N N N N N N 14.242 6.331 9.380 -1.645 -0.562 1.975 H6 1D1 30
1D1 H7 H7 H 0 1 N N N N N N 13.413 7.913 9.565 -2.091 1.159 2.047 H7 1D1 31
1D1 H8 H8 H 0 1 N N N N N N 13.133 7.014 7.289 -3.678 -0.121 3.392 H8 1D1 32
1D1 H9 H9 H 0 1 N N N N N N 12.386 5.524 7.960 -4.512 0.479 1.938 H9 1D1 33
1D1 H10 H10 H 0 1 N N N N N N 11.557 7.107 8.145 -3.997 -1.222 2.030 H10 1D1 34
1D1 H11 H11 H 0 1 N N N N N N 10.111 8.501 11.558 -0.493 1.779 1.181 H11 1D1 35
1D1 H12 H12 H 0 1 N N N N N N 9.895 9.355 9.411 -2.675 2.680 -0.697 H12 1D1 36
1D1 H13 H13 H 0 1 N N N N N N 11.628 9.098 9.014 -2.481 2.996 1.056 H13 1D1 37
1D1 H14 H14 H 0 1 N N N N N N 11.838 11.321 9.693 -1.972 4.983 -0.694 H14 1D1 38
1D1 H15 H15 H 0 1 N N N N N N 10.336 11.263 10.677 -0.840 4.721 0.674 H15 1D1 39
1D1 H16 H16 H 0 1 N N N N N N 13.111 10.874 11.536 -0.577 3.756 -2.227 H16 1D1 40
1D1 H17 H17 H 0 1 N N N N N N 11.623 10.964 12.540 0.644 4.598 -1.222 H17 1D1 41
1D1 H18 H18 H 0 1 N N N N N N 11.952 8.722 12.940 1.213 2.655 -0.063 H18 1D1 42
1D1 H19 H19 H 0 1 N N N N N N 13.130 8.573 11.592 0.567 1.845 -1.518 H19 1D1 43
1D1 H20 H20 H 0 1 N N N N N N 4.847 5.514 9.238 3.180 1.726 0.218 H20 1D1 44
1D1 H21 H21 H 0 1 N N N N N N 3.289 7.639 9.676 5.838 1.647 0.547 H21 1D1 45
1D1 H22 H22 H 0 1 N N N N N N 4.800 9.543 10.720 6.569 -0.869 0.539 H22 1D1 46
1D1 H23 H23 H 0 1 N N N N N N 7.187 8.586 10.939 4.433 -2.243 0.229 H23 1D1 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1D1 C22 C21 SING N N 1
1D1 C21 C14 SING N N 2
1D1 C3 C4 SING Y N 3
1D1 C3 C2 DOUB Y N 4
1D1 C20 C19 SING N N 5
1D1 C20 C16 SING N N 6
1D1 N7 C8 DOUB Y N 7
1D1 N7 C6 SING Y N 8
1D1 C8 C9 SING Y N 9
1D1 C4 C5 DOUB Y N 10
1D1 C24 N12 SING N N 11
1D1 C2 C6 SING N N 12
1D1 C2 N1 SING Y N 13
1D1 C6 N11 DOUB Y N 14
1D1 C9 N12 SING N N 15
1D1 C9 C10 DOUB Y N 16
1D1 N12 C13 SING N N 17
1D1 N11 C10 SING Y N 18
1D1 C19 C18 SING N N 19
1D1 C10 N15 SING N N 20
1D1 C5 N1 SING Y N 21
1D1 C13 O23 DOUB N N 22
1D1 C13 C14 SING N N 23
1D1 C14 N15 SING N N 24
1D1 N15 C16 SING N N 25
1D1 C16 C17 SING N N 26
1D1 C18 C17 SING N N 27
1D1 C24 H1 SING N N 28
1D1 C24 H2 SING N N 29
1D1 C24 H3 SING N N 30
1D1 C8 H4 SING N N 31
1D1 C14 H5 SING N N 32
1D1 C21 H6 SING N N 33
1D1 C21 H7 SING N N 34
1D1 C22 H8 SING N N 35
1D1 C22 H9 SING N N 36
1D1 C22 H10 SING N N 37
1D1 C16 H11 SING N N 38
1D1 C20 H12 SING N N 39
1D1 C20 H13 SING N N 40
1D1 C19 H14 SING N N 41
1D1 C19 H15 SING N N 42
1D1 C18 H16 SING N N 43
1D1 C18 H17 SING N N 44
1D1 C17 H18 SING N N 45
1D1 C17 H19 SING N N 46
1D1 C3 H20 SING N N 47
1D1 C4 H21 SING N N 48
1D1 C5 H22 SING N N 49
1D1 N1 H23 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1D1 SMILES ACDLabs 12.01 O=C1N(c3cnc(nc3N(C1CC)C2CCCC2)c4cccn4)C
1D1 InChI InChI 1.03 InChI=1S/C18H23N5O/c1-3-14-18(24)22(2)15-11-20-16(13-9-6-10-19-13)21-17(15)23(14)12-7-4-5-8-12/h6,9-12,14,19H,3-5,7-8H2,1-2H3/t14-/m1/s1
1D1 InChIKey InChI 1.03 DBHNCRPFJNHKDP-CQSZACIVSA-N
1D1 SMILES_CANONICAL CACTVS 3.370 CC[C@H]1N(C2CCCC2)c3nc(ncc3N(C)C1=O)c4[nH]ccc4
1D1 SMILES CACTVS 3.370 CC[CH]1N(C2CCCC2)c3nc(ncc3N(C)C1=O)c4[nH]ccc4
1D1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC[C@@H]1C(=O)N(c2cnc(nc2N1C3CCCC3)c4ccc[nH]4)C
1D1 SMILES "OpenEye OEToolkits" 1.7.6 CCC1C(=O)N(c2cnc(nc2N1C3CCCC3)c4ccc[nH]4)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1D1 "SYSTEMATIC NAME" ACDLabs 12.01 (7R)-8-cyclopentyl-7-ethyl-5-methyl-2-(1H-pyrrol-2-yl)-7,8-dihydropteridin-6(5H)-one
1D1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (7R)-8-cyclopentyl-7-ethyl-5-methyl-2-(1H-pyrrol-2-yl)-7H-pteridin-6-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1D1 'Create component' 2012-12-10 RCSB
1D1 'Initial release' 2013-12-25 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1D1 O23 O 4.299 2.654 1
1D1 C13 C 5.598 1.904 2
1D1 N12 N 6.897 2.654 3
1D1 C24 C 6.897 4.154 4
1D1 C9 C 8.196 1.904 5
1D1 C8 C 9.537 2.706 6
1D1 N7 N 10.896 1.935 7
1D1 C14 C 5.598 0.404 8
1D1 C21 C 4.299 -0.346 9
1D1 C22 C 3.000 0.404 10
1D1 N15 N 6.897 -0.346 11
1D1 C16 C 6.897 -1.846 12
1D1 C20 C 5.684 -2.728 13
1D1 C19 C 6.147 -4.154 14
1D1 C18 C 7.647 -4.154 15
1D1 C17 C 8.111 -2.728 16
1D1 C10 C 8.196 0.404 17
1D1 N11 N 9.537 -0.398 18
1D1 C6 C 10.896 0.373 19
1D1 C2 C 12.192 -0.382 20
1D1 C3 C 13.565 0.223 21
1D1 C4 C 14.564 -0.896 22
1D1 C5 C 13.809 -2.192 23
1D1 N1 N 12.343 -1.874 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1D1 C22 C21 SINGLE NONE 1
1D1 C14 C21 SINGLE BEGINDASH 2
1D1 C3 C4 SINGLE NONE 3
1D1 C3 C2 DOUBLE NONE 4
1D1 C20 C19 SINGLE NONE 5
1D1 C20 C16 SINGLE NONE 6
1D1 N7 C8 DOUBLE NONE 7
1D1 N7 C6 SINGLE NONE 8
1D1 C8 C9 SINGLE NONE 9
1D1 C4 C5 DOUBLE NONE 10
1D1 C24 N12 SINGLE NONE 11
1D1 C2 C6 SINGLE NONE 12
1D1 C2 N1 SINGLE NONE 13
1D1 C6 N11 DOUBLE NONE 14
1D1 C9 N12 SINGLE NONE 15
1D1 C9 C10 DOUBLE NONE 16
1D1 N12 C13 SINGLE NONE 17
1D1 N11 C10 SINGLE NONE 18
1D1 C19 C18 SINGLE NONE 19
1D1 C10 N15 SINGLE NONE 20
1D1 C5 N1 SINGLE NONE 21
1D1 C13 O23 DOUBLE NONE 22
1D1 C13 C14 SINGLE NONE 23
1D1 C14 N15 SINGLE NONE 24
1D1 N15 C16 SINGLE NONE 25
1D1 C16 C17 SINGLE NONE 26
1D1 C18 C17 SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1D1 MurckoScaffold S1 scaffold 'O=C1CN(C2CCCC2)c2nc(-c3ccc[nH]3)ncc2N1' InChI=1S/C15H17N5O/c21-13-9-20(10-4-1-2-5-10)15-12(18-13)8-17-14(19-15)11-6-3-7-16-11/h3,6-8,10,16H,1-2,4-5,9H2,(H,18,21) NDHYHXABIHCIPG-UHFFFAOYSA-N
1D1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1D1 cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
1D1 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
1D1 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
1D1 pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1D1 O23 S1 1
1D1 C13 S1 1
1D1 N12 S1 1
1D1 C9 S1 1
1D1 C8 S1 1
1D1 N7 S1 1
1D1 C14 S1 1
1D1 N15 S1 1
1D1 C16 S1 1
1D1 C20 S1 1
1D1 C19 S1 1
1D1 C18 S1 1
1D1 C17 S1 1
1D1 C10 S1 1
1D1 N11 S1 1
1D1 C6 S1 1
1D1 C2 S1 1
1D1 C3 S1 1
1D1 C4 S1 1
1D1 C5 S1 1
1D1 N1 S1 1
1D1 N12 F1 1
1D1 C13 F1 1
1D1 O23 F1 1
1D1 C14 F1 1
1D1 C16 F2 1
1D1 C20 F2 1
1D1 C19 F2 1
1D1 C18 F2 1
1D1 C17 F2 1
1D1 O23 F3 1
1D1 C13 F3 1
1D1 C14 F3 1
1D1 N15 F3 1
1D1 C9 F4 1
1D1 C8 F4 1
1D1 N7 F4 1
1D1 C6 F4 1
1D1 N11 F4 1
1D1 C10 F4 1
1D1 C2 F5 1
1D1 C3 F5 1
1D1 C4 F5 1
1D1 C5 F5 1
1D1 N1 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1D1
_pdbe_chem_comp_rdkit_properties.exactmw 325.190
_pdbe_chem_comp_rdkit_properties.amw 325.416
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 173.828
_pdbe_chem_comp_rdkit_properties.tpsa 65.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.834
_pdbe_chem_comp_rdkit_properties.CrippenMR 91.073
_pdbe_chem_comp_rdkit_properties.chi0v 11.644
_pdbe_chem_comp_rdkit_properties.chi1v 6.387
_pdbe_chem_comp_rdkit_properties.chi2v 3.139
_pdbe_chem_comp_rdkit_properties.chi3v 3.139
_pdbe_chem_comp_rdkit_properties.chi4v 2.111
_pdbe_chem_comp_rdkit_properties.chi0n 34.644
_pdbe_chem_comp_rdkit_properties.chi1n 17.835
_pdbe_chem_comp_rdkit_properties.chi2n 3.139
_pdbe_chem_comp_rdkit_properties.chi3n 3.139
_pdbe_chem_comp_rdkit_properties.chi4n 2.111
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.370
_pdbe_chem_comp_rdkit_properties.kappa1 4.058
_pdbe_chem_comp_rdkit_properties.kappa2 5.925
_pdbe_chem_comp_rdkit_properties.kappa3 2.283
_pdbe_chem_comp_rdkit_properties.Phi 1.002
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1D1 UniChem ZINC ZINC000095921023
1D1 UniChem SureChEMBL SCHEMBL2048590
1D1 UniChem PubChem 67259851
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1D1 O23 -3.477 -2.195 -1.247 ETKDGv3 1
1D1 C13 -2.361 -1.771 -0.838 ETKDGv3 2
1D1 N12 -1.150 -2.498 -1.121 ETKDGv3 3
1D1 C24 -1.202 -3.797 -1.802 ETKDGv3 4
1D1 C9 0.107 -1.954 -0.662 ETKDGv3 5
1D1 C8 1.347 -2.770 -0.621 ETKDGv3 6
1D1 N7 2.459 -2.248 -0.199 ETKDGv3 7
1D1 C14 -2.302 -0.505 -0.024 ETKDGv3 8
1D1 C21 -2.486 -0.801 1.478 ETKDGv3 9
1D1 C22 -3.899 -1.273 1.820 ETKDGv3 10
1D1 N15 -1.000 0.165 -0.238 ETKDGv3 11
1D1 C16 -0.822 1.631 -0.072 ETKDGv3 12
1D1 C20 0.078 2.233 -1.155 ETKDGv3 13
1D1 C19 -0.348 3.694 -1.305 ETKDGv3 14
1D1 C18 -1.617 3.867 -0.476 ETKDGv3 15
1D1 C17 -2.102 2.461 -0.179 ETKDGv3 16
1D1 C10 0.181 -0.673 -0.247 ETKDGv3 17
1D1 N11 1.442 -0.152 0.212 ETKDGv3 18
1D1 C6 2.518 -0.881 0.234 ETKDGv3 19
1D1 C2 3.793 -0.314 0.702 ETKDGv3 20
1D1 C3 3.980 0.934 1.115 ETKDGv3 21
1D1 C4 5.391 1.058 1.479 ETKDGv3 22
1D1 C5 5.963 -0.118 1.263 ETKDGv3 23
1D1 N1 5.010 -1.047 0.766 ETKDGv3 24
1D1 H1 -2.165 -3.943 -2.334 ETKDGv3 25
1D1 H2 -1.077 -4.613 -1.060 ETKDGv3 26
1D1 H3 -0.398 -3.860 -2.566 ETKDGv3 27
1D1 H4 1.341 -3.807 -0.925 ETKDGv3 28
1D1 H5 -3.139 0.132 -0.366 ETKDGv3 29
1D1 H6 -1.752 -1.568 1.811 ETKDGv3 30
1D1 H7 -2.285 0.127 2.056 ETKDGv3 31
1D1 H8 -4.650 -0.531 1.474 ETKDGv3 32
1D1 H9 -4.107 -2.257 1.351 ETKDGv3 33
1D1 H10 -3.995 -1.385 2.920 ETKDGv3 34
1D1 H11 -0.364 1.826 0.924 ETKDGv3 35
1D1 H12 -0.075 1.699 -2.120 ETKDGv3 36
1D1 H13 1.151 2.173 -0.873 ETKDGv3 37
1D1 H14 -0.551 3.925 -2.374 ETKDGv3 38
1D1 H15 0.448 4.376 -0.935 ETKDGv3 39
1D1 H16 -1.377 4.387 0.478 ETKDGv3 40
1D1 H17 -2.387 4.451 -1.027 ETKDGv3 41
1D1 H18 -2.716 2.135 -1.047 ETKDGv3 42
1D1 H19 -2.700 2.424 0.757 ETKDGv3 43
1D1 H20 3.230 1.712 1.170 ETKDGv3 44
1D1 H21 5.887 1.942 1.856 ETKDGv3 45
1D1 H22 7.006 -0.346 1.437 ETKDGv3 46
1D1 H23 5.174 -2.045 0.508 ETKDGv3 47
#