data_1EB
#
_chem_comp.id 1EB
_chem_comp.name N-(4-nitrophenyl)cyclopropanecarboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H10 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-08-13
_chem_comp.pdbx_modified_date 2013-09-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 206.198
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1EB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4LVD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1EB C1 C1 C 0 1 Y N N N N N 11.435 2.250 35.771 0.181 -0.674 0.384 C1 1EB 1
1EB C2 C2 C 0 1 Y N N N N N 12.213 2.591 34.681 1.525 -0.978 0.296 C2 1EB 2
1EB C3 C3 C 0 1 Y N N N N N 11.779 2.313 33.394 2.446 0.021 0.039 C3 1EB 3
1EB C4 C4 C 0 1 Y N N N N N 10.563 1.689 33.196 2.024 1.327 -0.131 C4 1EB 4
1EB C5 C5 C 0 1 Y N N N N N 9.791 1.341 34.289 0.681 1.637 -0.043 C5 1EB 5
1EB C6 C6 C 0 1 Y N N N N N 10.197 1.633 35.591 -0.247 0.635 0.209 C6 1EB 6
1EB N7 N7 N 0 1 N N N N N N 9.370 1.209 36.658 -1.608 0.946 0.298 N7 1EB 7
1EB C8 C8 C 0 1 N N N N N N 9.711 1.108 37.975 -2.530 0.072 -0.152 C8 1EB 8
1EB O9 O9 O 0 1 N N N N N N 10.798 1.459 38.406 -2.185 -1.018 -0.557 O9 1EB 9
1EB C10 C10 C 0 1 N N N N N N 8.705 0.558 38.960 -3.989 0.450 -0.153 C10 1EB 10
1EB C11 C11 C 0 1 N N N N N N 9.048 -0.795 39.598 -4.986 -0.586 -0.677 C11 1EB 11
1EB C12 C12 C 0 1 N N N N N N 9.103 0.471 40.444 -4.910 -0.287 0.822 C12 1EB 12
1EB N13 N13 N 1 1 N N N N N N 12.619 2.680 32.234 3.886 -0.308 -0.055 N13 1EB 13
1EB O14 O14 O -1 1 N N N N N N 13.685 3.241 32.409 4.259 -1.457 0.095 O14 1EB 14
1EB O15 O15 O 0 1 N N N N N N 12.255 2.400 31.108 4.698 0.572 -0.281 O15 1EB 15
1EB H1 H1 H 0 1 N N N N N N 11.788 2.463 36.769 -0.538 -1.455 0.586 H1 1EB 16
1EB H2 H2 H 0 1 N N N N N N 13.165 3.077 34.833 1.858 -1.997 0.428 H2 1EB 17
1EB H3 H3 H 0 1 N N N N N N 10.218 1.475 32.195 2.745 2.105 -0.332 H3 1EB 18
1EB H4 H4 H 0 1 N N N N N N 8.852 0.831 34.131 0.352 2.658 -0.175 H4 1EB 19
1EB H5 H5 H 0 1 N N N N N N 8.432 0.955 36.420 -1.888 1.791 0.685 H5 1EB 20
1EB H6 H6 H 0 1 N N N N N N 7.642 0.747 38.747 -4.203 1.500 -0.351 H6 1EB 21
1EB H7 H7 H 0 1 N N N N N N 8.255 -1.537 39.771 -5.857 -0.217 -1.219 H7 1EB 22
1EB H8 H8 H 0 1 N N N N N N 9.979 -1.312 39.322 -4.587 -1.540 -1.021 H8 1EB 23
1EB H9 H9 H 0 1 N N N N N N 10.073 0.868 40.777 -4.460 -1.045 1.464 H9 1EB 24
1EB H10 H10 H 0 1 N N N N N N 8.349 0.642 41.226 -5.729 0.278 1.265 H10 1EB 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1EB O15 N13 DOUB N N 1
1EB N13 O14 SING N N 2
1EB N13 C3 SING N N 3
1EB C4 C3 DOUB Y N 4
1EB C4 C5 SING Y N 5
1EB C3 C2 SING Y N 6
1EB C5 C6 DOUB Y N 7
1EB C2 C1 DOUB Y N 8
1EB C6 C1 SING Y N 9
1EB C6 N7 SING N N 10
1EB N7 C8 SING N N 11
1EB C8 O9 DOUB N N 12
1EB C8 C10 SING N N 13
1EB C10 C11 SING N N 14
1EB C10 C12 SING N N 15
1EB C11 C12 SING N N 16
1EB C1 H1 SING N N 17
1EB C2 H2 SING N N 18
1EB C4 H3 SING N N 19
1EB C5 H4 SING N N 20
1EB N7 H5 SING N N 21
1EB C10 H6 SING N N 22
1EB C11 H7 SING N N 23
1EB C11 H8 SING N N 24
1EB C12 H9 SING N N 25
1EB C12 H10 SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1EB SMILES ACDLabs 12.01 O=C(Nc1ccc([N+]([O-])=O)cc1)C2CC2
1EB InChI InChI 1.03 InChI=1S/C10H10N2O3/c13-10(7-1-2-7)11-8-3-5-9(6-4-8)12(14)15/h3-7H,1-2H2,(H,11,13)
1EB InChIKey InChI 1.03 PXCMXAOVWGQBSS-UHFFFAOYSA-N
1EB SMILES_CANONICAL CACTVS 3.370 "[O-][N+](=O)c1ccc(NC(=O)C2CC2)cc1"
1EB SMILES CACTVS 3.370 "[O-][N+](=O)c1ccc(NC(=O)C2CC2)cc1"
1EB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1cc(ccc1NC(=O)C2CC2)[N+](=O)[O-]
1EB SMILES "OpenEye OEToolkits" 1.7.6 c1cc(ccc1NC(=O)C2CC2)[N+](=O)[O-]
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1EB "SYSTEMATIC NAME" ACDLabs 12.01 N-(4-nitrophenyl)cyclopropanecarboxamide
1EB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N-(4-nitrophenyl)cyclopropanecarboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1EB 'Create component' 2013-08-13 RCSB
1EB 'Initial release' 2013-09-25 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1EB C1 C 5.598 -0.649 1
1EB C2 C 5.598 -2.150 2
1EB C3 C 4.299 -2.900 3
1EB C4 C 3.000 -2.150 4
1EB C5 C 3.000 -0.649 5
1EB C6 C 4.299 0.101 6
1EB N7 N 4.299 1.601 7
1EB C8 C 5.598 2.350 8
1EB O9 O 6.897 1.601 9
1EB C10 C 5.598 3.850 10
1EB C11 C 6.348 5.149 11
1EB C12 C 4.848 5.149 12
1EB N13 N 4.299 -4.399 13
1EB O14 O 5.598 -5.149 14
1EB O15 O 3.000 -5.149 15
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1EB O15 N13 DOUBLE NONE 1
1EB N13 O14 SINGLE NONE 2
1EB N13 C3 SINGLE NONE 3
1EB C4 C3 DOUBLE NONE 4
1EB C4 C5 SINGLE NONE 5
1EB C3 C2 SINGLE NONE 6
1EB C5 C6 DOUBLE NONE 7
1EB C2 C1 DOUBLE NONE 8
1EB C6 C1 SINGLE NONE 9
1EB C6 N7 SINGLE NONE 10
1EB N7 C8 SINGLE NONE 11
1EB C8 O9 DOUBLE NONE 12
1EB C8 C10 SINGLE NONE 13
1EB C10 C11 SINGLE NONE 14
1EB C10 C12 SINGLE NONE 15
1EB C11 C12 SINGLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1EB MurckoScaffold S1 scaffold O=C(Nc1ccccc1)C1CC1 InChI=1S/C10H11NO/c12-10(8-6-7-8)11-9-4-2-1-3-5-9/h1-5,8H,6-7H2,(H,11,12) OCHYJSATRBHPLB-UHFFFAOYSA-N
1EB amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1EB cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
1EB phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1EB C1 S1 1
1EB C2 S1 1
1EB C3 S1 1
1EB C4 S1 1
1EB C5 S1 1
1EB C6 S1 1
1EB N7 S1 1
1EB C8 S1 1
1EB O9 S1 1
1EB C10 S1 1
1EB C11 S1 1
1EB C12 S1 1
1EB N7 F1 1
1EB C8 F1 1
1EB O9 F1 1
1EB C10 F1 1
1EB C10 F2 1
1EB C11 F2 1
1EB C12 F2 1
1EB C1 F3 1
1EB C2 F3 1
1EB C3 F3 1
1EB C4 F3 1
1EB C5 F3 1
1EB C6 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1EB
_pdbe_chem_comp_rdkit_properties.exactmw 206.069
_pdbe_chem_comp_rdkit_properties.amw 206.201
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 15
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 100.357
_pdbe_chem_comp_rdkit_properties.tpsa 72.240
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.182
_pdbe_chem_comp_rdkit_properties.CrippenMR 52.802
_pdbe_chem_comp_rdkit_properties.chi0v 7.119
_pdbe_chem_comp_rdkit_properties.chi1v 3.740
_pdbe_chem_comp_rdkit_properties.chi2v 1.458
_pdbe_chem_comp_rdkit_properties.chi3v 1.458
_pdbe_chem_comp_rdkit_properties.chi4v 0.742
_pdbe_chem_comp_rdkit_properties.chi0n 17.119
_pdbe_chem_comp_rdkit_properties.chi1n 8.687
_pdbe_chem_comp_rdkit_properties.chi2n 1.458
_pdbe_chem_comp_rdkit_properties.chi3n 1.458
_pdbe_chem_comp_rdkit_properties.chi4n 0.742
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.910
_pdbe_chem_comp_rdkit_properties.kappa1 3.297
_pdbe_chem_comp_rdkit_properties.kappa2 3.684
_pdbe_chem_comp_rdkit_properties.kappa3 2.309
_pdbe_chem_comp_rdkit_properties.Phi 0.810
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1EB UniChem ChEMBL CHEMBL3127517
1EB UniChem PDBe 1EB
1EB UniChem ZINC ZINC000004550032
1EB UniChem eMolecules 2183373
1EB UniChem BindingDb 50448646
1EB UniChem SureChEMBL SCHEMBL18040074
1EB UniChem 'PubChem TPHARMA' 16666894
1EB UniChem PubChem 2921832
1EB UniChem Mcule MCULE-6085246549
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1EB C1 -1.345 0.623 0.788 ETKDGv3 1
1EB C2 -2.668 0.804 0.686 ETKDGv3 2
1EB C3 -3.465 0.015 -0.287 ETKDGv3 3
1EB C4 -2.837 -0.899 -1.052 ETKDGv3 4
1EB C5 -1.379 -1.102 -0.934 ETKDGv3 5
1EB C6 -0.653 -0.366 -0.078 ETKDGv3 6
1EB N7 0.763 -0.590 0.029 ETKDGv3 7
1EB C8 1.720 0.440 0.321 ETKDGv3 8
1EB O9 1.373 1.652 0.350 ETKDGv3 9
1EB C10 3.146 0.076 0.607 ETKDGv3 10
1EB C11 3.871 -0.591 -0.552 ETKDGv3 11
1EB C12 4.182 0.851 -0.193 ETKDGv3 12
1EB N13 -4.885 0.225 -0.394 ETKDGv3 13
1EB O14 -5.508 1.163 0.397 ETKDGv3 14
1EB O15 -5.572 -0.433 -1.203 ETKDGv3 15
1EB H1 -0.794 1.182 1.532 ETKDGv3 16
1EB H2 -3.153 1.524 1.332 ETKDGv3 17
1EB H3 -3.385 -1.498 -1.768 ETKDGv3 18
1EB H4 -0.900 -1.844 -1.561 ETKDGv3 19
1EB H5 1.130 -1.544 -0.195 ETKDGv3 20
1EB H6 3.451 -0.251 1.624 ETKDGv3 21
1EB H7 4.662 -1.309 -0.250 ETKDGv3 22
1EB H8 3.296 -0.701 -1.497 ETKDGv3 23
1EB H9 5.157 0.985 0.322 ETKDGv3 24
1EB H10 3.791 1.588 -0.927 ETKDGv3 25
#