data_1ER
#
_chem_comp.id 1ER
_chem_comp.name 3-(3-tert-butylphenyl)pyridin-2(1H)-one
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H17 N O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-01-07
_chem_comp.pdbx_modified_date 2013-06-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 227.302
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1ER
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4IH7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1ER O O O 0 1 N N N N N N -10.733 6.085 9.946 -2.287 -1.427 1.395 O 1ER 1
1ER C13 C13 C 0 1 N N N N N N -11.232 6.876 10.752 -2.628 -0.502 0.676 C13 1ER 2
1ER N N N 0 1 N N N N N N -12.329 6.477 11.513 -3.878 -0.008 0.760 N 1ER 3
1ER C12 C12 C 0 1 N N N N N N -12.965 7.255 12.433 -4.277 1.020 -0.031 C12 1ER 4
1ER C11 C11 C 0 1 N N N N N N -12.553 8.525 12.669 -3.431 1.582 -0.928 C11 1ER 5
1ER C10 C10 C 0 1 N N N N N N -11.454 9.031 11.939 -2.122 1.105 -1.052 C10 1ER 6
1ER C9 C9 C 0 1 N N N N N N -10.794 8.262 11.007 -1.708 0.058 -0.243 C9 1ER 7
1ER C8 C8 C 0 1 Y N N N N N -9.651 8.813 10.228 -0.328 -0.470 -0.343 C8 1ER 8
1ER C7 C7 C 0 1 Y N N N N N -9.577 8.645 8.845 -0.106 -1.771 -0.793 C7 1ER 9
1ER C6 C6 C 0 1 Y N N N N N -8.497 9.147 8.135 1.182 -2.255 -0.890 C6 1ER 10
1ER C5 C5 C 0 1 Y N N N N N -7.485 9.829 8.796 2.253 -1.452 -0.540 C5 1ER 11
1ER C14 C14 C 0 1 Y N N N N N -8.633 9.511 10.878 0.757 0.335 0.007 C14 1ER 12
1ER C4 C4 C 0 1 Y N N N N N -7.540 10.028 10.175 2.040 -0.160 -0.093 C4 1ER 13
1ER C1 C1 C 0 1 N N N N N N -6.406 10.763 10.908 3.213 0.708 0.285 C1 1ER 14
1ER C3 C3 C 0 1 N N N N N N -6.903 11.418 12.204 3.228 1.958 -0.597 C3 1ER 15
1ER C2 C2 C 0 1 N N N N N N -5.812 11.886 10.041 3.089 1.121 1.753 C2 1ER 16
1ER C C C 0 1 N N N N N N -5.288 9.769 11.281 4.512 -0.074 0.083 C 1ER 17
1ER H1 H1 H 0 1 N N N N N N -13.806 6.856 12.980 -5.285 1.397 0.056 H1 1ER 18
1ER H2 H2 H 0 1 N N N N N N -13.056 9.139 13.402 -3.769 2.399 -1.548 H2 1ER 19
1ER H3 H3 H 0 1 N N N N N N -11.124 10.044 12.116 -1.443 1.548 -1.766 H3 1ER 20
1ER H5 H5 H 0 1 N N N N N N -10.365 8.121 8.325 -0.942 -2.398 -1.066 H5 1ER 21
1ER H6 H6 H 0 1 N N N N N N -8.443 9.007 7.065 1.355 -3.263 -1.238 H6 1ER 22
1ER H7 H7 H 0 1 N N N N N N -6.644 10.210 8.235 3.260 -1.836 -0.617 H7 1ER 23
1ER H8 H8 H 0 1 N N N N N N -8.690 9.655 11.947 0.592 1.345 0.352 H8 1ER 24
1ER H9 H9 H 0 1 N N N N N N -7.339 10.650 12.860 2.302 2.515 -0.454 H9 1ER 25
1ER H10 H10 H 0 1 N N N N N N -6.059 11.902 12.717 4.076 2.585 -0.324 H10 1ER 26
1ER H11 H11 H 0 1 N N N N N N -7.667 12.172 11.964 3.316 1.663 -1.643 H11 1ER 27
1ER H12 H12 H 0 1 N N N N N N -5.006 12.390 10.594 3.078 0.230 2.382 H12 1ER 28
1ER H13 H13 H 0 1 N N N N N N -5.407 11.457 9.113 3.937 1.749 2.026 H13 1ER 29
1ER H14 H14 H 0 1 N N N N N N -6.599 12.615 9.796 2.163 1.678 1.897 H14 1ER 30
1ER H15 H15 H 0 1 N N N N N N -5.706 8.962 11.902 4.601 -0.369 -0.962 H15 1ER 31
1ER H16 H16 H 0 1 N N N N N N -4.858 9.340 10.364 5.360 0.553 0.357 H16 1ER 32
1ER H17 H17 H 0 1 N N N N N N -4.503 10.295 11.844 4.502 -0.965 0.712 H17 1ER 33
1ER H4 H4 H 0 1 N N N N N N -12.676 5.549 11.373 -4.503 -0.393 1.394 H4 1ER 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1ER C6 C5 DOUB Y N 1
1ER C6 C7 SING Y N 2
1ER C5 C4 SING Y N 3
1ER C7 C8 DOUB Y N 4
1ER O C13 DOUB N N 5
1ER C2 C1 SING N N 6
1ER C4 C14 DOUB Y N 7
1ER C4 C1 SING N N 8
1ER C8 C14 SING Y N 9
1ER C8 C9 SING N N 10
1ER C13 C9 SING N N 11
1ER C13 N SING N N 12
1ER C1 C SING N N 13
1ER C1 C3 SING N N 14
1ER C9 C10 DOUB N N 15
1ER N C12 SING N N 16
1ER C10 C11 SING N N 17
1ER C12 C11 DOUB N N 18
1ER C12 H1 SING N N 19
1ER C11 H2 SING N N 20
1ER C10 H3 SING N N 21
1ER C7 H5 SING N N 22
1ER C6 H6 SING N N 23
1ER C5 H7 SING N N 24
1ER C14 H8 SING N N 25
1ER C3 H9 SING N N 26
1ER C3 H10 SING N N 27
1ER C3 H11 SING N N 28
1ER C2 H12 SING N N 29
1ER C2 H13 SING N N 30
1ER C2 H14 SING N N 31
1ER C H15 SING N N 32
1ER C H16 SING N N 33
1ER C H17 SING N N 34
1ER N H4 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1ER SMILES ACDLabs 12.01 O=C2C(c1cc(ccc1)C(C)(C)C)=CC=CN2
1ER InChI InChI 1.03 InChI=1S/C15H17NO/c1-15(2,3)12-7-4-6-11(10-12)13-8-5-9-16-14(13)17/h4-10H,1-3H3,(H,16,17)
1ER InChIKey InChI 1.03 OCDNGTPNEHVSMA-UHFFFAOYSA-N
1ER SMILES_CANONICAL CACTVS 3.370 CC(C)(C)c1cccc(c1)C2=CC=CNC2=O
1ER SMILES CACTVS 3.370 CC(C)(C)c1cccc(c1)C2=CC=CNC2=O
1ER SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)(C)c1cccc(c1)C2=CC=CNC2=O
1ER SMILES "OpenEye OEToolkits" 1.7.6 CC(C)(C)c1cccc(c1)C2=CC=CNC2=O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1ER "SYSTEMATIC NAME" ACDLabs 12.01 3-(3-tert-butylphenyl)pyridin-2(1H)-one
1ER "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 3-(3-tert-butylphenyl)-1H-pyridin-2-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1ER 'Create component' 2013-01-07 RCSB
1ER 'Initial release' 2013-07-03 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1ER O O 9.495 1.399 1
1ER C13 C 8.196 2.150 2
1ER N N 8.196 3.650 3
1ER C12 C 6.897 4.399 4
1ER C11 C 5.598 3.650 5
1ER C10 C 5.598 2.150 6
1ER C9 C 6.897 1.399 7
1ER C8 C 6.897 -0.101 8
1ER C7 C 8.196 -0.851 9
1ER C6 C 8.196 -2.350 10
1ER C5 C 6.897 -3.100 11
1ER C14 C 5.598 -0.851 12
1ER C4 C 5.598 -2.350 13
1ER C1 C 4.299 -3.100 14
1ER C3 C 3.549 -1.802 15
1ER C2 C 3.000 -3.850 16
1ER C C 5.049 -4.399 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1ER C6 C5 SINGLE NONE 1
1ER C6 C7 DOUBLE NONE 2
1ER C5 C4 DOUBLE NONE 3
1ER C7 C8 SINGLE NONE 4
1ER O C13 DOUBLE NONE 5
1ER C2 C1 SINGLE NONE 6
1ER C4 C14 SINGLE NONE 7
1ER C4 C1 SINGLE NONE 8
1ER C8 C14 DOUBLE NONE 9
1ER C8 C9 SINGLE NONE 10
1ER C13 C9 SINGLE NONE 11
1ER C13 N SINGLE NONE 12
1ER C1 C SINGLE NONE 13
1ER C1 C3 SINGLE NONE 14
1ER C9 C10 DOUBLE NONE 15
1ER N C12 SINGLE NONE 16
1ER C10 C11 SINGLE NONE 17
1ER C12 C11 DOUBLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1ER MurckoScaffold S1 scaffold 'O=c1[nH]cccc1-c1ccccc1' InChI=1S/C11H9NO/c13-11-10(7-4-8-12-11)9-5-2-1-3-6-9/h1-8H,(H,12,13) FLYJEBSUJDZJDE-UHFFFAOYSA-N
1ER phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
1ER pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1ER O S1 1
1ER C13 S1 1
1ER N S1 1
1ER C12 S1 1
1ER C11 S1 1
1ER C10 S1 1
1ER C9 S1 1
1ER C8 S1 1
1ER C7 S1 1
1ER C6 S1 1
1ER C5 S1 1
1ER C14 S1 1
1ER C4 S1 1
1ER C8 F1 1
1ER C7 F1 1
1ER C6 F1 1
1ER C5 F1 1
1ER C4 F1 1
1ER C14 F1 1
1ER C13 F2 1
1ER C9 F2 1
1ER C10 F2 1
1ER C11 F2 1
1ER C12 F2 1
1ER N F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1ER
_pdbe_chem_comp_rdkit_properties.exactmw 227.131
_pdbe_chem_comp_rdkit_properties.amw 227.307
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.267
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 125.272
_pdbe_chem_comp_rdkit_properties.tpsa 32.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.805
_pdbe_chem_comp_rdkit_properties.CrippenMR 69.719
_pdbe_chem_comp_rdkit_properties.chi0v 8.355
_pdbe_chem_comp_rdkit_properties.chi1v 4.401
_pdbe_chem_comp_rdkit_properties.chi2v 1.865
_pdbe_chem_comp_rdkit_properties.chi3v 1.865
_pdbe_chem_comp_rdkit_properties.chi4v 1.104
_pdbe_chem_comp_rdkit_properties.chi0n 25.355
_pdbe_chem_comp_rdkit_properties.chi1n 12.849
_pdbe_chem_comp_rdkit_properties.chi2n 1.865
_pdbe_chem_comp_rdkit_properties.chi3n 1.865
_pdbe_chem_comp_rdkit_properties.chi4n 1.104
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.830
_pdbe_chem_comp_rdkit_properties.kappa1 2.768
_pdbe_chem_comp_rdkit_properties.kappa2 4.207
_pdbe_chem_comp_rdkit_properties.kappa3 2.466
_pdbe_chem_comp_rdkit_properties.Phi 0.685
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1ER UniChem ChEMBL CHEMBL2324312
1ER UniChem PDBe 1ER
1ER UniChem ZINC ZINC000095583003
1ER UniChem SureChEMBL SCHEMBL2128898
1ER UniChem 'PubChem TPHARMA' 163690408
1ER UniChem 'PubChem TPHARMA' 87552083
1ER UniChem PubChem 44624989
1ER UniChem Nikkaji J3.210.938A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1ER O 1.986 2.189 -0.750 ETKDGv3 1
1ER C13 2.763 1.206 -0.883 ETKDGv3 2
1ER N 4.013 1.371 -1.562 ETKDGv3 3
1ER C12 4.927 0.273 -1.656 ETKDGv3 4
1ER C11 4.615 -0.912 -1.122 ETKDGv3 5
1ER C10 3.322 -1.116 -0.433 ETKDGv3 6
1ER C9 2.422 -0.123 -0.318 ETKDGv3 7
1ER C8 1.127 -0.363 0.368 ETKDGv3 8
1ER C7 1.101 -1.071 1.669 ETKDGv3 9
1ER C6 -0.058 -1.299 2.287 ETKDGv3 10
1ER C5 -1.325 -0.849 1.682 ETKDGv3 11
1ER C14 -0.032 0.041 -0.186 ETKDGv3 12
1ER C4 -1.344 -0.200 0.495 ETKDGv3 13
1ER C1 -2.686 0.262 -0.109 ETKDGv3 14
1ER C3 -2.511 0.990 -1.463 ETKDGv3 15
1ER C2 -3.383 1.241 0.861 ETKDGv3 16
1ER C -3.598 -0.961 -0.348 ETKDGv3 17
1ER H1 5.876 0.405 -2.161 ETKDGv3 18
1ER H2 5.312 -1.736 -1.198 ETKDGv3 19
1ER H3 3.106 -2.101 -0.038 ETKDGv3 20
1ER H5 2.024 -1.397 2.131 ETKDGv3 21
1ER H6 -0.072 -1.813 3.239 ETKDGv3 22
1ER H7 -2.238 -1.055 2.223 ETKDGv3 23
1ER H8 0.003 0.526 -1.151 ETKDGv3 24
1ER H9 -1.882 1.899 -1.346 ETKDGv3 25
1ER H10 -2.050 0.317 -2.218 ETKDGv3 26
1ER H11 -3.495 1.315 -1.865 ETKDGv3 27
1ER H12 -3.640 0.750 1.823 ETKDGv3 28
1ER H13 -2.722 2.108 1.078 ETKDGv3 29
1ER H14 -4.330 1.625 0.422 ETKDGv3 30
1ER H15 -4.552 -0.654 -0.829 ETKDGv3 31
1ER H16 -3.092 -1.696 -1.012 ETKDGv3 32
1ER H17 -3.855 -1.471 0.604 ETKDGv3 33
1ER H4 4.269 2.296 -1.974 ETKDGv3 34
#