data_1G5
#
_chem_comp.id 1G5
_chem_comp.name "HMB-Val-Ser-Phe(4-NH2CH2)-methyl vinyl sulfone, bound form"
_chem_comp.type peptide-like
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C28 H40 N4 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-01-22
_chem_comp.pdbx_modified_date 2013-01-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 576.705
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1G5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4INT
_chem_comp.pdbx_subcomponent_list "PF0 VAL SER 1G3"
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1G5 C1 C1 C 0 1 Y N N N N N 13.757 -136.164 24.882 8.665 1.297 -1.101 C1 PF0 1
1G5 C6 C6 C 0 1 Y N N N N N 14.102 -135.660 23.623 7.441 1.843 -1.439 C2 PF0 2
1G5 C5 C5 C 0 1 Y N N N N N 13.504 -136.186 22.473 6.272 1.239 -1.023 C3 PF0 3
1G5 C4 C4 C 0 1 Y N N N N N 12.557 -137.221 22.563 6.324 0.072 -0.258 C4 PF0 4
1G5 C3 C3 C 0 1 Y N N N N N 12.210 -137.730 23.835 7.561 -0.478 0.083 C5 PF0 5
1G5 C2 C2 C 0 1 Y N N N N N 12.813 -137.198 24.994 8.727 0.137 -0.340 C6 PF0 6
1G5 C7 C7 C 0 1 N N N N N N 11.177 -138.864 23.988 7.626 -1.737 0.908 C7 PF0 7
1G5 C9 C9 C 0 1 N N N N N N 11.925 -137.773 21.297 5.074 -0.577 0.190 C8 PF0 8
1G5 O8 O8 O 0 1 N N N N N N 12.472 -137.699 26.259 9.933 -0.398 -0.014 O2 PF0 9
1G5 O32 O32 O 0 1 N N N N N N 12.466 -138.741 20.784 5.117 -1.651 0.758 O3 PF0 10
1G5 N10 N10 N 0 1 N N N N N N 10.806 -137.202 20.781 3.887 0.021 -0.031 N VAL 11
1G5 C11 C11 C 0 1 N N S N N N 10.248 -137.569 19.472 2.648 -0.623 0.414 CA VAL 12
1G5 C15 C15 C 0 1 N N N N N N 11.183 -137.192 18.331 1.499 -0.138 -0.432 C VAL 13
1G5 O16 O16 O 0 1 N N N N N N 11.706 -136.089 18.366 1.695 0.666 -1.318 O VAL 14
1G5 C12 C12 C 0 1 N N N N N N 8.794 -136.994 19.355 2.387 -0.270 1.879 CB VAL 15
1G5 C13 C13 C 0 1 N N N N N N 7.792 -137.856 20.175 3.554 -0.763 2.738 CG1 VAL 16
1G5 C14 C14 C 0 1 N N N N N N 8.275 -136.907 17.890 2.253 1.247 2.023 CG2 VAL 17
1G5 N17 N17 N 0 1 N N N N N N 11.390 -138.106 17.345 0.253 -0.598 -0.203 N SER 18
1G5 C18 C18 C 0 1 N N S N N N 12.281 -137.884 16.195 -0.864 -0.126 -1.025 CA SER 19
1G5 C19 C19 C 0 1 N N N N N N 11.571 -137.956 14.836 -2.150 -0.262 -0.251 C SER 20
1G5 O33 O33 O 0 1 N N N N N N 10.390 -138.276 14.905 -2.135 -0.709 0.877 O SER 21
1G5 C40 C40 C 0 1 N N N N N N 13.738 -138.433 16.225 -0.947 -0.965 -2.302 CB SER 22
1G5 O41 O41 O 0 1 N N N N N N 13.732 -139.874 16.308 -1.270 -2.316 -1.965 OG SER 23
1G5 O38 O38 O 0 1 N N N N N N 14.822 -139.223 13.205 -4.803 -4.444 -1.155 O50 1G3 24
1G5 S36 S36 S 0 1 N N N N N N 14.131 -139.920 12.139 -4.794 -4.118 0.228 S48 1G3 25
1G5 O37 O37 O 0 1 N N N N N N 14.921 -140.725 11.231 -5.998 -4.229 0.974 O49 1G3 26
1G5 C39 C39 C 0 1 N N N N N N 12.893 -141.006 12.884 -3.514 -5.109 1.046 C51 1G3 27
1G5 C35 C35 C 0 1 N N N N N N 13.264 -138.703 11.113 -4.146 -2.435 0.422 C47 1G3 28
1G5 C23 C23 C 0 1 N N N N N N 11.706 -138.571 11.155 -5.113 -1.439 -0.222 C46 1G3 29
1G5 C21 C21 C 0 1 N N S N N N 11.364 -137.564 12.294 -4.567 -0.019 -0.058 C36 1G3 30
1G5 C22 C22 C 0 1 N N N N N N 11.378 -136.077 11.810 -5.591 0.985 -0.590 C37 1G3 31
1G5 C24 C24 C 0 1 Y N N N N N 10.342 -135.155 12.480 -5.108 2.387 -0.318 C38 1G3 32
1G5 C25 C25 C 0 1 Y N N N N N 10.439 -133.770 12.269 -5.442 3.015 0.867 C43 1G3 33
1G5 C26 C26 C 0 1 Y N N N N N 9.523 -132.887 12.856 -4.999 4.301 1.117 C42 1G3 34
1G5 C27 C27 C 0 1 Y N N N N N 8.486 -133.375 13.665 -4.221 4.957 0.182 C41 1G3 35
1G5 C30 C30 C 0 1 N N N N N N 7.481 -132.407 14.313 -3.738 6.359 0.454 C44 1G3 36
1G5 N31 N31 N 0 1 N N N N N N 7.722 -131.011 13.893 -2.438 6.304 1.135 N45 1G3 37
1G5 C28 C28 C 0 1 Y N N N N N 8.385 -134.759 13.876 -3.886 4.328 -1.003 C40 1G3 38
1G5 C29 C29 C 0 1 Y N N N N N 9.303 -135.643 13.289 -4.325 3.041 -1.251 C39 1G3 39
1G5 N20 N20 N 0 1 N N N N N N 12.064 -137.723 13.580 -3.317 0.113 -0.811 N35 1G3 40
1G5 H5 H5 H 0 1 N N N N N N 14.218 -135.757 25.770 9.576 1.772 -1.433 H36 PF0 41
1G5 H6 H6 H 0 1 N N N N N N 14.829 -134.866 23.539 7.399 2.745 -2.031 H37 PF0 42
1G5 H7 H7 H 0 1 N N N N N N 13.773 -135.792 21.504 5.318 1.668 -1.289 H38 PF0 43
1G5 H1 H1 H 0 1 N N N N N N 11.691 -139.836 23.951 7.510 -2.604 0.258 H32 PF0 44
1G5 H2 H2 H 0 1 N N N N N N 10.658 -138.760 24.953 8.589 -1.789 1.415 H33 PF0 45
1G5 H3 H3 H 0 1 N N N N N N 10.444 -138.805 23.170 6.826 -1.728 1.648 H34 PF0 46
1G5 H4 H4 H 0 1 N N N N N N 12.964 -137.236 26.927 10.298 -0.068 0.818 H23 PF0 47
1G5 H8 H8 H 0 1 N N N N N N 10.340 -136.498 21.317 3.853 0.878 -0.484 H VAL 48
1G5 H9 H9 H 0 1 N N N N N N 10.149 -138.664 19.452 2.744 -1.704 0.311 HA VAL 49
1G5 H10 H10 H 0 1 N N N N N N 8.796 -135.978 19.777 1.466 -0.749 2.210 HB VAL 50
1G5 H11 H11 H 0 1 N N N N N N 8.139 -137.932 21.216 3.368 -0.512 3.782 HG11 VAL 51
1G5 H12 H12 H 0 1 N N N N N N 6.799 -137.384 20.153 3.650 -1.844 2.635 HG12 VAL 52
1G5 H13 H13 H 0 1 N N N N N N 7.729 -138.862 19.736 4.476 -0.284 2.407 HG13 VAL 53
1G5 H14 H14 H 0 1 N N N N N N 7.254 -136.497 17.886 1.422 1.598 1.411 HG21 VAL 54
1G5 H15 H15 H 0 1 N N N N N N 8.936 -136.251 17.305 2.067 1.498 3.067 HG22 VAL 55
1G5 H16 H16 H 0 1 N N N N N N 8.268 -137.912 17.443 3.175 1.726 1.692 HG23 VAL 56
1G5 H17 H17 H 0 1 N N N N N N 10.908 -138.980 17.405 0.096 -1.241 0.506 H SER 57
1G5 H18 H18 H 0 1 N N N N N N 12.469 -136.803 16.273 -0.707 0.920 -1.287 HA SER 58
1G5 H19 H19 H 0 1 N N N N N N 14.260 -138.125 15.307 -1.721 -0.559 -2.954 HB2 SER 59
1G5 H20 H20 H 0 1 N N N N N N 14.262 -138.022 17.100 0.013 -0.938 -2.818 HB3 SER 60
1G5 H21 H21 H 0 1 N N N N N N 14.626 -140.194 16.325 -1.339 -2.906 -2.728 HG SER 61
1G5 H28 H28 H 0 1 N N N N N N 13.394 -141.756 13.514 -2.559 -4.957 0.542 H1 1G3 62
1G5 H29 H29 H 0 1 N N N N N N 12.206 -140.409 13.502 -3.427 -4.801 2.089 H2 1G3 63
1G5 H30 H30 H 0 1 N N N N N N 12.325 -141.514 12.090 -3.785 -6.163 1.000 H3 1G3 64
1G5 H26 H26 H 0 1 N N N N N N 13.530 -138.929 10.070 -4.041 -2.206 1.482 H4 1G3 65
1G5 H27 H27 H 0 1 N N N N N N 13.668 -137.718 11.389 -3.173 -2.362 -0.064 H5 1G3 66
1G5 H24 H24 H 0 1 N N N N N N 11.333 -138.193 10.192 -5.218 -1.668 -1.282 H6 1G3 67
1G5 H25 H25 H 0 1 N N N N N N 11.250 -139.549 11.366 -6.086 -1.512 0.264 H7 1G3 68
1G5 H23 H23 H 0 1 N N N N N N 10.306 -137.762 12.520 -4.378 0.178 0.997 H8 1G3 69
1G5 H31 H31 H 0 1 N N N N N N 12.378 -135.665 12.009 -5.714 0.845 -1.664 H9 1G3 70
1G5 H32 H32 H 0 1 N N N N N N 11.188 -136.071 10.727 -6.547 0.828 -0.091 H10 1G3 71
1G5 H33 H33 H 0 1 N N N N N N 11.230 -133.380 11.646 -6.050 2.502 1.598 H11 1G3 72
1G5 H34 H34 H 0 1 N N N N N N 9.616 -131.825 12.685 -5.261 4.792 2.042 H12 1G3 73
1G5 H35 H35 H 0 1 N N N N N N 6.463 -132.698 14.016 -3.632 6.896 -0.489 H13 1G3 74
1G5 H36 H36 H 0 1 N N N N N N 7.577 -132.472 15.407 -4.459 6.875 1.087 H14 1G3 75
1G5 H37 H37 H 0 1 N N N N N N 7.053 -130.410 14.331 -2.092 7.232 1.329 H15 1G3 76
1G5 H38 H38 H 0 1 N N N N N N 8.645 -130.736 14.164 -2.495 5.756 1.981 H16 1G3 77
1G5 H40 H40 H 0 1 N N N N N N 7.592 -135.148 14.497 -3.277 4.841 -1.733 H18 1G3 78
1G5 H41 H41 H 0 1 N N N N N N 9.210 -136.705 13.460 -4.060 2.549 -2.174 H19 1G3 79
1G5 H22 H22 H 0 1 N N N N N N 13.060 -137.649 13.527 -3.329 0.470 -1.713 H20 1G3 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1G5 C35 C23 SING N N 1
1G5 C35 S36 SING N N 2
1G5 C23 C21 SING N N 3
1G5 O37 S36 DOUB N N 4
1G5 C22 C21 SING N N 5
1G5 C22 C24 SING N N 6
1G5 S36 C39 SING N N 7
1G5 S36 O38 DOUB N N 8
1G5 C25 C24 DOUB Y N 9
1G5 C25 C26 SING Y N 10
1G5 C21 N20 SING N N 11
1G5 C24 C29 SING Y N 12
1G5 C26 C27 DOUB Y N 13
1G5 C29 C28 DOUB Y N 14
1G5 N20 C19 SING N N 15
1G5 C27 C28 SING Y N 16
1G5 C27 C30 SING N N 17
1G5 N31 C30 SING N N 18
1G5 C19 O33 DOUB N N 19
1G5 C19 C18 SING N N 20
1G5 C18 C40 SING N N 21
1G5 C18 N17 SING N N 22
1G5 C40 O41 SING N N 23
1G5 N17 C15 SING N N 24
1G5 C14 C12 SING N N 25
1G5 C15 O16 DOUB N N 26
1G5 C15 C11 SING N N 27
1G5 C12 C11 SING N N 28
1G5 C12 C13 SING N N 29
1G5 C11 N10 SING N N 30
1G5 N10 C9 SING N N 31
1G5 O32 C9 DOUB N N 32
1G5 C9 C4 SING N N 33
1G5 C5 C4 DOUB Y N 34
1G5 C5 C6 SING Y N 35
1G5 C4 C3 SING Y N 36
1G5 C6 C1 DOUB Y N 37
1G5 C3 C7 SING N N 38
1G5 C3 C2 DOUB Y N 39
1G5 C1 C2 SING Y N 40
1G5 C2 O8 SING N N 41
1G5 C7 H1 SING N N 42
1G5 C7 H2 SING N N 43
1G5 C7 H3 SING N N 44
1G5 O8 H4 SING N N 45
1G5 C1 H5 SING N N 46
1G5 C6 H6 SING N N 47
1G5 C5 H7 SING N N 48
1G5 N10 H8 SING N N 49
1G5 C11 H9 SING N N 50
1G5 C12 H10 SING N N 51
1G5 C13 H11 SING N N 52
1G5 C13 H12 SING N N 53
1G5 C13 H13 SING N N 54
1G5 C14 H14 SING N N 55
1G5 C14 H15 SING N N 56
1G5 C14 H16 SING N N 57
1G5 N17 H17 SING N N 58
1G5 C18 H18 SING N N 59
1G5 C40 H19 SING N N 60
1G5 C40 H20 SING N N 61
1G5 O41 H21 SING N N 62
1G5 N20 H22 SING N N 63
1G5 C21 H23 SING N N 64
1G5 C23 H24 SING N N 65
1G5 C23 H25 SING N N 66
1G5 C35 H26 SING N N 67
1G5 C35 H27 SING N N 68
1G5 C39 H28 SING N N 69
1G5 C39 H29 SING N N 70
1G5 C39 H30 SING N N 71
1G5 C22 H31 SING N N 72
1G5 C22 H32 SING N N 73
1G5 C25 H33 SING N N 74
1G5 C26 H34 SING N N 75
1G5 C30 H35 SING N N 76
1G5 C30 H36 SING N N 77
1G5 N31 H37 SING N N 78
1G5 N31 H38 SING N N 79
1G5 C28 H40 SING N N 80
1G5 C29 H41 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1G5 SMILES ACDLabs 12.01 O=S(=O)(C)CCC(NC(=O)C(NC(=O)C(NC(=O)c1cccc(O)c1C)C(C)C)CO)Cc2ccc(cc2)CN
1G5 InChI InChI 1.03 InChI=1S/C28H40N4O7S/c1-17(2)25(32-26(35)22-6-5-7-24(34)18(22)3)28(37)31-23(16-33)27(36)30-21(12-13-40(4,38)39)14-19-8-10-20(15-29)11-9-19/h5-11,17,21,23,25,33-34H,12-16,29H2,1-4H3,(H,30,36)(H,31,37)(H,32,35)/t21-,23+,25+/m1/s1
1G5 InChIKey InChI 1.03 OCEOTFNCOHQGQA-VTZPFEBOSA-N
1G5 SMILES_CANONICAL CACTVS 3.370 CC(C)[C@H](NC(=O)c1cccc(O)c1C)C(=O)N[C@@H](CO)C(=O)N[C@H](CC[S](C)(=O)=O)Cc2ccc(CN)cc2
1G5 SMILES CACTVS 3.370 CC(C)[CH](NC(=O)c1cccc(O)c1C)C(=O)N[CH](CO)C(=O)N[CH](CC[S](C)(=O)=O)Cc2ccc(CN)cc2
1G5 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1c(cccc1O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CO)C(=O)N[C@H](CCS(=O)(=O)C)Cc2ccc(cc2)CN
1G5 SMILES "OpenEye OEToolkits" 1.7.6 Cc1c(cccc1O)C(=O)NC(C(C)C)C(=O)NC(CO)C(=O)NC(CCS(=O)(=O)C)Cc2ccc(cc2)CN
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1G5 "SYSTEMATIC NAME" ACDLabs 12.01 N-(3-hydroxy-2-methylbenzoyl)-L-valyl-N-[(2S)-1-[4-(aminomethyl)phenyl]-4-(methylsulfonyl)butan-2-yl]-L-serinamide
1G5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N-[(2S)-1-[[(2S)-1-[[(2S)-1-[4-(aminomethyl)phenyl]-4-methylsulfonyl-butan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-3-methyl-1-oxidanylidene-butan-2-yl]-2-methyl-3-oxidanyl-benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1G5 'Create component' 2013-01-22 RCSB
1G5 'Initial release' 2013-01-25 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1G5 C1 C 5.598 -10.500 1
1G5 C6 C 6.897 -9.750 2
1G5 C5 C 6.897 -8.250 3
1G5 C4 C 5.598 -7.500 4
1G5 C3 C 4.299 -8.250 5
1G5 C2 C 4.299 -9.750 6
1G5 C7 C 3.000 -7.500 7
1G5 C9 C 5.598 -6.000 8
1G5 O8 O 3.000 -10.500 9
1G5 O32 O 4.299 -5.250 10
1G5 N10 N 6.897 -5.250 11
1G5 C11 C 6.897 -3.750 12
1G5 C15 C 8.196 -3.000 13
1G5 O16 O 9.495 -3.750 14
1G5 C12 C 5.598 -3.000 15
1G5 C13 C 4.299 -3.750 16
1G5 C14 C 5.598 -1.500 17
1G5 N17 N 8.196 -1.500 18
1G5 C18 C 9.495 -0.750 19
1G5 C19 C 9.495 0.750 20
1G5 O33 O 8.196 1.500 21
1G5 C40 C 10.794 -1.500 22
1G5 O41 O 12.093 -0.750 23
1G5 O38 O 6.897 6.750 24
1G5 S36 S 8.196 6.000 25
1G5 O37 O 7.446 4.701 26
1G5 C39 C 8.946 7.299 27
1G5 C35 C 9.495 5.250 28
1G5 C23 C 9.495 3.750 29
1G5 C21 C 10.794 3.000 30
1G5 C22 C 12.093 3.750 31
1G5 C24 C 12.093 5.250 32
1G5 C25 C 13.392 6.000 33
1G5 C26 C 13.392 7.500 34
1G5 C27 C 12.093 8.250 35
1G5 C30 C 12.093 9.750 36
1G5 N31 N 13.392 10.500 37
1G5 C28 C 10.794 7.500 38
1G5 C29 C 10.794 6.000 39
1G5 N20 N 10.794 1.500 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1G5 C35 C23 SINGLE NONE 1
1G5 C35 S36 SINGLE NONE 2
1G5 C21 C23 SINGLE BEGINDASH 3
1G5 O37 S36 DOUBLE NONE 4
1G5 C22 C21 SINGLE NONE 5
1G5 C22 C24 SINGLE NONE 6
1G5 S36 C39 SINGLE NONE 7
1G5 S36 O38 DOUBLE NONE 8
1G5 C25 C24 DOUBLE NONE 9
1G5 C25 C26 SINGLE NONE 10
1G5 C21 N20 SINGLE NONE 11
1G5 C24 C29 SINGLE NONE 12
1G5 C26 C27 DOUBLE NONE 13
1G5 C29 C28 DOUBLE NONE 14
1G5 N20 C19 SINGLE NONE 15
1G5 C27 C28 SINGLE NONE 16
1G5 C27 C30 SINGLE NONE 17
1G5 N31 C30 SINGLE NONE 18
1G5 C19 O33 DOUBLE NONE 19
1G5 C19 C18 SINGLE NONE 20
1G5 C18 C40 SINGLE BEGINDASH 21
1G5 C18 N17 SINGLE NONE 22
1G5 C40 O41 SINGLE NONE 23
1G5 N17 C15 SINGLE NONE 24
1G5 C14 C12 SINGLE NONE 25
1G5 C15 O16 DOUBLE NONE 26
1G5 C15 C11 SINGLE NONE 27
1G5 C12 C11 SINGLE NONE 28
1G5 C12 C13 SINGLE NONE 29
1G5 C11 N10 SINGLE BEGINWEDGE 30
1G5 N10 C9 SINGLE NONE 31
1G5 O32 C9 DOUBLE NONE 32
1G5 C9 C4 SINGLE NONE 33
1G5 C5 C4 DOUBLE NONE 34
1G5 C5 C6 SINGLE NONE 35
1G5 C4 C3 SINGLE NONE 36
1G5 C6 C1 DOUBLE NONE 37
1G5 C3 C7 SINGLE NONE 38
1G5 C3 C2 DOUBLE NONE 39
1G5 C1 C2 SINGLE NONE 40
1G5 C2 O8 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1G5 MurckoScaffold S1 scaffold O=C(CNC(=O)CNC(=O)c1ccccc1)NCCc1ccccc1 InChI=1S/C19H21N3O3/c23-17(20-12-11-15-7-3-1-4-8-15)13-21-18(24)14-22-19(25)16-9-5-2-6-10-16/h1-10H,11-14H2,(H,20,23)(H,21,24)(H,22,25) TYHDKUHOBWRKQT-UHFFFAOYSA-N
1G5 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1G5 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
1G5 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1G5 C1 S1 1
1G5 C6 S1 1
1G5 C5 S1 1
1G5 C4 S1 1
1G5 C3 S1 1
1G5 C2 S1 1
1G5 C9 S1 1
1G5 O32 S1 1
1G5 N10 S1 1
1G5 C11 S1 1
1G5 C15 S1 1
1G5 O16 S1 1
1G5 N17 S1 1
1G5 C18 S1 1
1G5 C19 S1 1
1G5 O33 S1 1
1G5 C21 S1 1
1G5 C22 S1 1
1G5 C24 S1 1
1G5 C25 S1 1
1G5 C26 S1 1
1G5 C27 S1 1
1G5 C28 S1 1
1G5 C29 S1 1
1G5 N20 S1 1
1G5 N10 F1 1
1G5 C9 F1 1
1G5 O32 F1 1
1G5 C4 F1 1
1G5 N17 F1 2
1G5 C15 F1 2
1G5 O16 F1 2
1G5 C11 F1 2
1G5 N20 F1 3
1G5 C19 F1 3
1G5 O33 F1 3
1G5 C18 F1 3
1G5 O16 F2 1
1G5 C15 F2 1
1G5 C11 F2 1
1G5 N10 F2 1
1G5 O33 F2 2
1G5 C19 F2 2
1G5 C18 F2 2
1G5 N17 F2 2
1G5 C1 F3 1
1G5 C6 F3 1
1G5 C5 F3 1
1G5 C4 F3 1
1G5 C3 F3 1
1G5 C2 F3 1
1G5 C24 F3 2
1G5 C25 F3 2
1G5 C26 F3 2
1G5 C27 F3 2
1G5 C28 F3 2
1G5 C29 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 1G5
_pdbe_chem_comp_rdkit_properties.exactmw 576.262
_pdbe_chem_comp_rdkit_properties.amw 576.716
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.464
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 291.678
_pdbe_chem_comp_rdkit_properties.tpsa 187.920
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.128
_pdbe_chem_comp_rdkit_properties.CrippenMR 150.574
_pdbe_chem_comp_rdkit_properties.chi0v 19.871
_pdbe_chem_comp_rdkit_properties.chi1v 11.061
_pdbe_chem_comp_rdkit_properties.chi2v 4.088
_pdbe_chem_comp_rdkit_properties.chi3v 4.088
_pdbe_chem_comp_rdkit_properties.chi4v 2.324
_pdbe_chem_comp_rdkit_properties.chi0n 59.055
_pdbe_chem_comp_rdkit_properties.chi1n 29.130
_pdbe_chem_comp_rdkit_properties.chi2n 3.717
_pdbe_chem_comp_rdkit_properties.chi3n 3.717
_pdbe_chem_comp_rdkit_properties.chi4n 2.093
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.480
_pdbe_chem_comp_rdkit_properties.kappa1 7.667
_pdbe_chem_comp_rdkit_properties.kappa2 14.777
_pdbe_chem_comp_rdkit_properties.kappa3 9.923
_pdbe_chem_comp_rdkit_properties.Phi 2.833
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1G5 UniChem PDBe 1G5
1G5 UniChem ZINC ZINC000098207969
1G5 UniChem PubChem 78225400
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1G5 C1 -1.365 -0.158 -3.134 ETKDGv3 1
1G5 C6 -2.626 -0.122 -2.698 ETKDGv3 2
1G5 C5 -3.028 0.862 -1.679 ETKDGv3 3
1G5 C4 -2.134 1.729 -1.170 ETKDGv3 4
1G5 C3 -0.707 1.671 -1.636 ETKDGv3 5
1G5 C2 -0.357 0.776 -2.587 ETKDGv3 6
1G5 C7 0.321 2.607 -1.048 ETKDGv3 7
1G5 C9 -2.570 2.717 -0.155 ETKDGv3 8
1G5 O8 0.954 0.710 -3.059 ETKDGv3 9
1G5 O32 -2.152 3.905 -0.225 ETKDGv3 10
1G5 N10 -3.442 2.330 0.919 ETKDGv3 11
1G5 C11 -3.466 3.069 2.186 ETKDGv3 12
1G5 C15 -2.303 2.600 3.024 ETKDGv3 13
1G5 O16 -1.422 3.429 3.381 ETKDGv3 14
1G5 C12 -4.828 2.881 2.909 ETKDGv3 15
1G5 C13 -5.987 3.368 2.025 ETKDGv3 16
1G5 C14 -4.860 3.630 4.252 ETKDGv3 17
1G5 N17 -2.173 1.215 3.375 ETKDGv3 18
1G5 C18 -0.865 0.589 3.591 ETKDGv3 19
1G5 C19 -0.300 0.108 2.279 ETKDGv3 20
1G5 O33 -1.070 -0.100 1.301 ETKDGv3 21
1G5 C40 -0.997 -0.584 4.567 ETKDGv3 22
1G5 O41 -1.492 -0.125 5.795 ETKDGv3 23
1G5 O38 -0.203 -4.088 -2.549 ETKDGv3 24
1G5 S36 0.522 -4.000 -1.236 ETKDGv3 25
1G5 O37 -0.320 -4.631 -0.163 ETKDGv3 26
1G5 C39 2.069 -4.871 -1.370 ETKDGv3 27
1G5 C35 0.818 -2.282 -0.851 ETKDGv3 28
1G5 C23 1.245 -2.098 0.612 ETKDGv3 29
1G5 C21 1.695 -0.638 0.898 ETKDGv3 30
1G5 C22 3.234 -0.507 0.961 ETKDGv3 31
1G5 C24 3.886 -0.849 -0.356 ETKDGv3 32
1G5 C25 4.429 -2.062 -0.564 ETKDGv3 33
1G5 C26 4.960 -2.424 -1.893 ETKDGv3 34
1G5 C27 4.915 -1.541 -2.905 ETKDGv3 35
1G5 C30 5.376 -1.929 -4.286 ETKDGv3 36
1G5 N31 4.286 -2.527 -5.052 ETKDGv3 37
1G5 C28 4.329 -0.199 -2.674 ETKDGv3 38
1G5 C29 3.852 0.130 -1.468 ETKDGv3 39
1G5 N20 1.104 -0.168 2.158 ETKDGv3 40
1G5 H5 -1.079 -0.883 -3.886 ETKDGv3 41
1G5 H6 -3.358 -0.811 -3.098 ETKDGv3 42
1G5 H7 -4.067 0.889 -1.373 ETKDGv3 43
1G5 H1 0.191 3.621 -1.481 ETKDGv3 44
1G5 H2 1.360 2.277 -1.245 ETKDGv3 45
1G5 H3 0.205 2.656 0.055 ETKDGv3 46
1G5 H4 1.230 0.031 -3.757 ETKDGv3 47
1G5 H8 -3.829 1.359 0.919 ETKDGv3 48
1G5 H9 -3.343 4.156 1.979 ETKDGv3 49
1G5 H10 -4.993 1.801 3.115 ETKDGv3 50
1G5 H11 -6.956 3.231 2.551 ETKDGv3 51
1G5 H12 -6.031 2.783 1.082 ETKDGv3 52
1G5 H13 -5.864 4.444 1.775 ETKDGv3 53
1G5 H14 -4.665 4.713 4.101 ETKDGv3 54
1G5 H15 -5.852 3.509 4.736 ETKDGv3 55
1G5 H16 -4.097 3.219 4.947 ETKDGv3 56
1G5 H17 -2.987 0.583 3.199 ETKDGv3 57
1G5 H18 -0.161 1.329 4.033 ETKDGv3 58
1G5 H19 0.001 -1.052 4.724 ETKDGv3 59
1G5 H20 -1.687 -1.351 4.147 ETKDGv3 60
1G5 H21 -1.564 -0.924 6.379 ETKDGv3 61
1G5 H28 2.694 -4.395 -2.153 ETKDGv3 62
1G5 H29 2.606 -4.839 -0.400 ETKDGv3 63
1G5 H30 1.876 -5.928 -1.646 ETKDGv3 64
1G5 H26 -0.118 -1.715 -1.029 ETKDGv3 65
1G5 H27 1.598 -1.900 -1.541 ETKDGv3 66
1G5 H24 2.055 -2.813 0.868 ETKDGv3 67
1G5 H25 0.382 -2.373 1.255 ETKDGv3 68
1G5 H23 1.337 0.039 0.090 ETKDGv3 69
1G5 H31 3.636 -1.149 1.776 ETKDGv3 70
1G5 H32 3.498 0.541 1.220 ETKDGv3 71
1G5 H33 4.453 -2.802 0.226 ETKDGv3 72
1G5 H34 5.359 -3.419 -2.046 ETKDGv3 73
1G5 H35 5.752 -1.032 -4.824 ETKDGv3 74
1G5 H36 6.221 -2.650 -4.225 ETKDGv3 75
1G5 H37 3.495 -1.843 -5.104 ETKDGv3 76
1G5 H38 3.939 -3.372 -4.542 ETKDGv3 77
1G5 H40 4.284 0.520 -3.482 ETKDGv3 78
1G5 H41 3.432 1.113 -1.309 ETKDGv3 79
1G5 H22 1.719 0.012 2.984 ETKDGv3 80
#