data_1LT
#
_chem_comp.id 1LT
_chem_comp.name
(2S)-N~1~-{4-methyl-5-[2-(1,1,1-trifluoro-2-methylpropan-2-yl)pyridin-4-yl]-1,3-thiazol-2-yl}pyrrolidine-1,2-dicarboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H22 F3 N5 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Alpelisib
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-03-22
_chem_comp.pdbx_modified_date 2022-09-30
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 441.470
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1LT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4JPS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1LT C1 C1 C 0 1 Y N N N N N -3.087 -11.726 15.781 -0.153 1.622 0.268 C1 1LT 1
1LT C2 C2 C 0 1 Y N N N N N -1.602 -10.429 14.778 -1.612 0.240 -0.697 C2 1LT 2
1LT C3 C3 C 0 1 N N N N N N 0.039 -8.873 13.802 -3.955 0.174 -0.354 C3 1LT 3
1LT O1 O1 O 0 1 N N N N N N 1.594 -5.212 13.667 -5.543 -0.796 1.983 O1 1LT 4
1LT C11 C11 C 0 1 Y N N N N N -4.271 -11.634 18.720 2.714 2.469 -0.664 C11 1LT 5
1LT C12 C12 C 0 1 Y N N N N N -4.645 -11.514 20.038 4.081 2.641 -0.699 C12 1LT 6
1LT C13 C13 C 0 1 Y N N N N N -2.910 -10.094 20.508 4.451 0.371 -0.482 C13 1LT 7
1LT C14 C14 C 0 1 Y N N N N N -2.463 -10.133 19.181 3.100 0.108 -0.427 C14 1LT 8
1LT C15 C15 C 0 1 N N N N N N -2.142 -9.317 21.593 5.435 -0.766 -0.385 C15 1LT 9
1LT C16 C16 C 0 1 N N N N N N -1.064 -8.417 20.965 4.981 -1.912 -1.291 C16 1LT 10
1LT C17 C17 C 0 1 N N N N N N -3.125 -8.478 22.433 6.818 -0.284 -0.826 C17 1LT 11
1LT C18 C18 C 0 1 N N N N N N -1.375 -10.357 22.593 5.504 -1.258 1.063 C18 1LT 12
1LT F2 F2 F 0 1 N N N N N N -0.678 -9.672 23.500 5.919 -0.210 1.892 F2 1LT 13
1LT F F F 0 1 N N N N N N -2.198 -11.158 23.260 4.239 -1.699 1.466 F 1LT 14
1LT F1 F1 F 0 1 N N N N N N -0.529 -11.151 21.940 6.416 -2.314 1.153 F1 1LT 15
1LT N4 N4 N 0 1 Y N N N N N -3.996 -10.752 20.929 4.897 1.608 -0.609 N4 1LT 16
1LT C10 C10 C 0 1 Y N N N N N -3.178 -10.904 18.272 2.196 1.175 -0.525 C10 1LT 17
1LT C9 C9 C 0 1 Y N N N N N -2.756 -10.939 16.856 0.739 0.941 -0.483 C9 1LT 18
1LT C C C 0 1 N N N N N N -4.054 -12.868 15.791 0.243 2.747 1.188 C 1LT 19
1LT S S S 0 1 Y N N N N N -1.578 -9.740 16.362 -0.143 -0.277 -1.401 S 1LT 20
1LT N N N 0 1 Y N N N N N -2.419 -11.439 14.606 -1.398 1.223 0.123 N 1LT 21
1LT N1 N1 N 0 1 N N N N N N -0.827 -9.973 13.727 -2.857 -0.310 -0.967 N1 1LT 22
1LT O O O 0 1 N N N N N N 0.182 -8.234 14.832 -3.855 1.093 0.436 O 1LT 23
1LT N2 N2 N 0 1 N N N N N N 0.726 -8.533 12.658 -5.165 -0.359 -0.617 N2 1LT 24
1LT C7 C7 C 0 1 N N S N N N 1.665 -7.400 12.674 -6.438 0.070 -0.022 C7 1LT 25
1LT C8 C8 C 0 1 N N N N N N 1.001 -6.059 12.992 -6.380 -0.079 1.477 C8 1LT 26
1LT N3 N3 N 0 1 N N N N N N -0.250 -5.909 12.580 -7.259 0.584 2.255 N3 1LT 27
1LT C6 C6 C 0 1 N N N N N N 2.293 -7.424 11.269 -7.543 -0.840 -0.597 C6 1LT 28
1LT C5 C5 C 0 1 N N N N N N 1.319 -8.193 10.412 -6.756 -2.098 -1.052 C5 1LT 29
1LT C4 C4 C 0 1 N N N N N N 0.637 -9.179 11.339 -5.430 -1.467 -1.553 C4 1LT 30
1LT H1 H1 H 0 1 N N N N N N -4.815 -12.282 18.048 2.052 3.319 -0.739 H1 1LT 31
1LT H2 H2 H 0 1 N N N N N N -5.511 -12.065 20.374 4.490 3.636 -0.802 H2 1LT 32
1LT H3 H3 H 0 1 N N N N N N -1.588 -9.580 18.873 2.743 -0.905 -0.324 H3 1LT 33
1LT H4 H4 H 0 1 N N N N N N -0.531 -7.874 21.759 4.931 -1.562 -2.322 H4 1LT 34
1LT H5 H5 H 0 1 N N N N N N -0.351 -9.037 20.403 5.692 -2.735 -1.221 H5 1LT 35
1LT H6 H6 H 0 1 N N N N N N -1.540 -7.696 20.284 3.995 -2.255 -0.977 H6 1LT 36
1LT H7 H7 H 0 1 N N N N N N -2.570 -7.926 23.206 7.142 0.532 -0.180 H7 1LT 37
1LT H8 H8 H 0 1 N N N N N N -3.650 -7.766 21.780 7.529 -1.107 -0.755 H8 1LT 38
1LT H9 H9 H 0 1 N N N N N N -3.857 -9.144 22.913 6.769 0.066 -1.857 H9 1LT 39
1LT H10 H10 H 0 1 N N N N N N -4.084 -13.332 14.794 0.298 3.677 0.623 H10 1LT 40
1LT H11 H11 H 0 1 N N N N N N -3.733 -13.614 16.533 -0.499 2.847 1.980 H11 1LT 41
1LT H12 H12 H 0 1 N N N N N N -5.056 -12.498 16.053 1.217 2.531 1.628 H12 1LT 42
1LT H13 H13 H 0 1 N N N N N N -0.888 -10.460 12.856 -2.937 -1.043 -1.597 H13 1LT 43
1LT H14 H14 H 0 1 N N N N N N 2.455 -7.588 13.416 -6.638 1.110 -0.283 H14 1LT 44
1LT H15 H15 H 0 1 N N N N N N -0.758 -5.080 12.814 -7.928 1.158 1.850 H15 1LT 45
1LT H16 H16 H 0 1 N N N N N N -0.686 -6.625 12.035 -7.221 0.488 3.219 H16 1LT 46
1LT H17 H17 H 0 1 N N N N N N 3.269 -7.930 11.292 -8.271 -1.098 0.172 H17 1LT 47
1LT H18 H18 H 0 1 N N N N N N 2.419 -6.401 10.886 -8.034 -0.362 -1.445 H18 1LT 48
1LT H19 H19 H 0 1 N N N N N N 0.579 -7.511 9.968 -6.580 -2.772 -0.214 H19 1LT 49
1LT H20 H20 H 0 1 N N N N N N 1.852 -8.727 9.612 -7.273 -2.611 -1.862 H20 1LT 50
1LT H21 H21 H 0 1 N N N N N N -0.412 -9.332 11.047 -5.548 -1.092 -2.569 H21 1LT 51
1LT H22 H22 H 0 1 N N N N N N 1.162 -10.146 11.339 -4.622 -2.198 -1.509 H22 1LT 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1LT C5 C6 SING N N 1
1LT C5 C4 SING N N 2
1LT C6 C7 SING N N 3
1LT C4 N2 SING N N 4
1LT N3 C8 SING N N 5
1LT N2 C7 SING N N 6
1LT N2 C3 SING N N 7
1LT C7 C8 SING N N 8
1LT C8 O1 DOUB N N 9
1LT N1 C3 SING N N 10
1LT N1 C2 SING N N 11
1LT C3 O DOUB N N 12
1LT N C2 DOUB Y N 13
1LT N C1 SING Y N 14
1LT C2 S SING Y N 15
1LT C1 C SING N N 16
1LT C1 C9 DOUB Y N 17
1LT S C9 SING Y N 18
1LT C9 C10 SING N N 19
1LT C10 C11 DOUB Y N 20
1LT C10 C14 SING Y N 21
1LT C11 C12 SING Y N 22
1LT C14 C13 DOUB Y N 23
1LT C12 N4 DOUB Y N 24
1LT C13 N4 SING Y N 25
1LT C13 C15 SING N N 26
1LT C16 C15 SING N N 27
1LT C15 C17 SING N N 28
1LT C15 C18 SING N N 29
1LT F1 C18 SING N N 30
1LT C18 F SING N N 31
1LT C18 F2 SING N N 32
1LT C11 H1 SING N N 33
1LT C12 H2 SING N N 34
1LT C14 H3 SING N N 35
1LT C16 H4 SING N N 36
1LT C16 H5 SING N N 37
1LT C16 H6 SING N N 38
1LT C17 H7 SING N N 39
1LT C17 H8 SING N N 40
1LT C17 H9 SING N N 41
1LT C H10 SING N N 42
1LT C H11 SING N N 43
1LT C H12 SING N N 44
1LT N1 H13 SING N N 45
1LT C7 H14 SING N N 46
1LT N3 H15 SING N N 47
1LT N3 H16 SING N N 48
1LT C6 H17 SING N N 49
1LT C6 H18 SING N N 50
1LT C5 H19 SING N N 51
1LT C5 H20 SING N N 52
1LT C4 H21 SING N N 53
1LT C4 H22 SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1LT SMILES ACDLabs 12.01 O=C(Nc1nc(c(s1)c2ccnc(c2)C(C)(C)C(F)(F)F)C)N3C(C(=O)N)CCC3
1LT InChI InChI 1.03 InChI=1S/C19H22F3N5O2S/c1-10-14(11-6-7-24-13(9-11)18(2,3)19(20,21)22)30-16(25-10)26-17(29)27-8-4-5-12(27)15(23)28/h6-7,9,12H,4-5,8H2,1-3H3,(H2,23,28)(H,25,26,29)/t12-/m0/s1
1LT InChIKey InChI 1.03 STUWGJZDJHPWGZ-LBPRGKRZSA-N
1LT SMILES_CANONICAL CACTVS 3.370 Cc1nc(NC(=O)N2CCC[C@H]2C(N)=O)sc1c3ccnc(c3)C(C)(C)C(F)(F)F
1LT SMILES CACTVS 3.370 Cc1nc(NC(=O)N2CCC[CH]2C(N)=O)sc1c3ccnc(c3)C(C)(C)C(F)(F)F
1LT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 Cc1c(sc(n1)NC(=O)N2CCC[C@H]2C(=O)N)c3ccnc(c3)C(C)(C)C(F)(F)F
1LT SMILES "OpenEye OEToolkits" 1.7.6 Cc1c(sc(n1)NC(=O)N2CCCC2C(=O)N)c3ccnc(c3)C(C)(C)C(F)(F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1LT "SYSTEMATIC NAME" ACDLabs 12.01 (2S)-N~1~-{4-methyl-5-[2-(1,1,1-trifluoro-2-methylpropan-2-yl)pyridin-4-yl]-1,3-thiazol-2-yl}pyrrolidine-1,2-dicarboxamide
1LT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2S)-N1-[4-methyl-5-[2-[1,1,1-tris(fluoranyl)-2-methyl-propan-2-yl]pyridin-4-yl]-1,3-thiazol-2-yl]pyrrolidine-1,2-dicarboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1LT 'Create component' 2013-03-22 RCSB
1LT 'Initial release' 2014-04-02 RCSB
1LT 'Modify synonyms' 2022-09-30 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 1LT
_pdbx_chem_comp_synonyms.name Alpelisib
_pdbx_chem_comp_synonyms.provenance DRUGBANK
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 1LT
_pdbe_chem_comp_drugbank_details.drugbank_id DB12015
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Alpelisib
_pdbe_chem_comp_drugbank_details.description
'Alpelisib is a phosphatidylinositol 3-kinase (PI3K) inhibitor with potent antitumor activity. It works by selectively inhibiting class I PI3K p110α [A179203], which is the catalytic subunit of PI3K, a lipid kinase that plays a role in various biological processes, including proliferation, survival, differentiation, and metabolism. Alpelisib was designed to target this enzyme that appears to be mutated at a rate of nearly 30% in human cancers, leading to hyperactivation.[A179209]   There are several isoform-specific PI3K inhibitors that are under clinical development or currently approved, such as [idelalisib] used for chronic lymphocytic leukemia (CLL).[A179209] Approved by the FDA in May 2019, alpelisib is the first approved PI3K inhibitor indicated for the treatment of hormone receptor (HR)-positive, human epidermal growth factor receptor 2 (HER2)-negative, PIK3CA-mutated, advanced or metastatic breast cancer in combination with [fulvestrant] for postmenopausal women and male patients. To initiate alpelisib therapy, it is required that the presence of a PIK3CA mutation in the tissue and/or liquid biopsy sample collection should be confirmed via FDA-approved diagnostic tests. Alpelisib is marketed under the trade name Piqray and is available as oral tablets. Studies evaluating the therapeutic effectiveness of alpelisib in other cancers, such as ovarian cancer [A179200] and colorectal cancer [A179203], are under ongoing investigations.  Alpelisib was granted FDA approval on 24 May 2019.[L6652] In April 2022, the FDA granted the use of alpelisib in the treatment of PIK3CA-Related Overgrowth Spectrum (PROS) in adults and children who require systemic therapy.[L41384]'
_pdbe_chem_comp_drugbank_details.cas_number 1217486-61-7
_pdbe_chem_comp_drugbank_details.mechanism_of_action
"Phosphatidylinositol-3-kinase-α (PI3Kα) is responsible for cell proliferation in response to growth factor-tyrosine kinase pathway activation.[A179209] In some cancers PI3Kα's p110α catalytic subunit is mutated making it hyperactive.[A179209] Alpelisib inhibits (PI3K), with the highest specificity for PI3Kα.[L6652]"
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
1LT BYL-719 ChEMBL 'Research Code'
1LT NVP-BYL719 ChEMBL 'Research Code'
1LT Alpelisib wwPDB ?
1LT Alpelisib DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 1LT
_pdbe_chem_comp_drugbank_classification.drugbank_id DB12015
_pdbe_chem_comp_drugbank_classification.parent 'Proline and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as proline and derivatives. These are compounds containing proline or a derivative thereof resulting from reaction of proline at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id 1LT
_pdbe_chem_comp_drugbank_targets.drugbank_id DB12015
_pdbe_chem_comp_drugbank_targets.name 'Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P42336
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1LT C1 C 7.590 -1.000 1
1LT C2 C 7.336 1.414 2
1LT C3 C 5.234 2.941 3
1LT O1 O 7.476 7.138 4
1LT C11 C 11.558 -0.390 5
1LT C12 C 12.857 -1.140 6
1LT C13 C 11.558 -3.390 7
1LT C14 C 10.259 -2.640 8
1LT C15 C 11.558 -4.890 9
1LT C16 C 13.058 -4.890 10
1LT C17 C 10.058 -4.890 11
1LT C18 C 11.558 -6.390 12
1LT F2 F 10.058 -6.390 13
1LT F F 13.058 -6.390 14
1LT F1 F 11.558 -7.890 15
1LT N4 N 12.857 -2.640 16
1LT C10 C 10.259 -1.140 17
1LT C9 C 8.960 -0.390 18
1LT C C 7.278 -2.467 19
1LT S S 8.803 1.102 20
1LT N N 6.586 0.115 21
1LT N1 N 6.726 2.784 22
1LT O O 4.352 1.727 23
1LT N2 N 4.624 4.311 24
1LT C7 C 5.374 5.610 25
1LT C8 C 6.866 5.767 26
1LT N3 N 7.747 4.553 27
1LT C6 C 4.370 6.725 28
1LT C5 C 3.000 6.115 29
1LT C4 C 3.157 4.623 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1LT C5 C6 SINGLE NONE 1
1LT C5 C4 SINGLE NONE 2
1LT C6 C7 SINGLE NONE 3
1LT C4 N2 SINGLE NONE 4
1LT N3 C8 SINGLE NONE 5
1LT N2 C7 SINGLE NONE 6
1LT N2 C3 SINGLE NONE 7
1LT C7 C8 SINGLE BEGINWEDGE 8
1LT C8 O1 DOUBLE NONE 9
1LT N1 C3 SINGLE NONE 10
1LT N1 C2 SINGLE NONE 11
1LT C3 O DOUBLE NONE 12
1LT N C2 DOUBLE NONE 13
1LT N C1 SINGLE NONE 14
1LT C2 S SINGLE NONE 15
1LT C1 C SINGLE NONE 16
1LT C1 C9 DOUBLE NONE 17
1LT S C9 SINGLE NONE 18
1LT C9 C10 SINGLE NONE 19
1LT C10 C11 DOUBLE NONE 20
1LT C10 C14 SINGLE NONE 21
1LT C11 C12 SINGLE NONE 22
1LT C14 C13 DOUBLE NONE 23
1LT C12 N4 DOUBLE NONE 24
1LT C13 N4 SINGLE NONE 25
1LT C13 C15 SINGLE NONE 26
1LT C16 C15 SINGLE NONE 27
1LT C15 C17 SINGLE NONE 28
1LT C15 C18 SINGLE NONE 29
1LT F1 C18 SINGLE NONE 30
1LT C18 F SINGLE NONE 31
1LT C18 F2 SINGLE NONE 32
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1LT MurckoScaffold S1 scaffold O=C(Nc1ncc(-c2ccncc2)s1)N1CCCC1 InChI=1S/C13H14N4OS/c18-13(17-7-1-2-8-17)16-12-15-9-11(19-12)10-3-5-14-6-4-10/h3-6,9H,1-2,7-8H2,(H,15,16,18) PRNIIUGADNAERG-UHFFFAOYSA-N
1LT amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1LT peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
1LT pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
1LT thiazole F4 fragment c1cscn1 InChI=1S/C3H3NS/c1-2-5-3-4-1/h1-3H FZWLAAWBMGSTSO-UHFFFAOYSA-N
1LT Z44590595 F5 fragment CCNC(=O)Nc1nccs1 InChI=1S/C6H9N3OS/c1-2-7-5(10)9-6-8-3-4-11-6/h3-4H,2H2,1H3,(H2,7,8,9,10) QJLXNWDDALWJDF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1LT C1 S1 1
1LT C2 S1 1
1LT C3 S1 1
1LT C11 S1 1
1LT C12 S1 1
1LT C13 S1 1
1LT C14 S1 1
1LT N4 S1 1
1LT C10 S1 1
1LT C9 S1 1
1LT S S1 1
1LT N S1 1
1LT N1 S1 1
1LT O S1 1
1LT N2 S1 1
1LT C7 S1 1
1LT C6 S1 1
1LT C5 S1 1
1LT C4 S1 1
1LT N3 F1 1
1LT C8 F1 1
1LT O1 F1 1
1LT C7 F1 1
1LT O1 F2 1
1LT C8 F2 1
1LT C7 F2 1
1LT N2 F2 1
1LT C12 F3 1
1LT C11 F3 1
1LT C10 F3 1
1LT C14 F3 1
1LT C13 F3 1
1LT N4 F3 1
1LT C9 F4 1
1LT C1 F4 1
1LT N F4 1
1LT C2 F4 1
1LT S F4 1
1LT C8 F5 1
1LT C7 F5 1
1LT N2 F5 1
1LT C3 F5 1
1LT O F5 1
1LT N1 F5 1
1LT C2 F5 1
1LT N F5 1
1LT C1 F5 1
1LT C9 F5 1
1LT S F5 1
1LT C6 F5 2
1LT C7 F5 2
1LT N2 F5 2
1LT C3 F5 2
1LT O F5 2
1LT N1 F5 2
1LT C2 F5 2
1LT N F5 2
1LT C1 F5 2
1LT C9 F5 2
1LT S F5 2
1LT C5 F5 3
1LT C4 F5 3
1LT N2 F5 3
1LT C3 F5 3
1LT O F5 3
1LT N1 F5 3
1LT C2 F5 3
1LT N F5 3
1LT C1 F5 3
1LT C9 F5 3
1LT S F5 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 1LT
_pdbe_chem_comp_rdkit_properties.exactmw 441.145
_pdbe_chem_comp_rdkit_properties.amw 441.479
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.474
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 206.129
_pdbe_chem_comp_rdkit_properties.tpsa 101.210
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.965
_pdbe_chem_comp_rdkit_properties.CrippenMR 104.426
_pdbe_chem_comp_rdkit_properties.chi0v 14.911
_pdbe_chem_comp_rdkit_properties.chi1v 8.186
_pdbe_chem_comp_rdkit_properties.chi2v 4.339
_pdbe_chem_comp_rdkit_properties.chi3v 4.339
_pdbe_chem_comp_rdkit_properties.chi4v 2.738
_pdbe_chem_comp_rdkit_properties.chi0n 36.095
_pdbe_chem_comp_rdkit_properties.chi1n 18.211
_pdbe_chem_comp_rdkit_properties.chi2n 3.373
_pdbe_chem_comp_rdkit_properties.chi3n 3.373
_pdbe_chem_comp_rdkit_properties.chi4n 1.948
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.690
_pdbe_chem_comp_rdkit_properties.kappa1 7.181
_pdbe_chem_comp_rdkit_properties.kappa2 7.859
_pdbe_chem_comp_rdkit_properties.kappa3 4.112
_pdbe_chem_comp_rdkit_properties.Phi 1.881
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1LT UniChem ChEMBL CHEMBL2396661
1LT UniChem DrugBank DB12015
1LT UniChem PDBe 1LT
1LT UniChem 'Guide to Pharmacology' 7955
1LT UniChem ChEBI 93752
1LT UniChem ZINC ZINC000068198368
1LT UniChem fdasrs 08W5N2C97Q
1LT UniChem SureChEMBL SCHEMBL1911869
1LT UniChem HMDB HMDB0304878
1LT UniChem Selleck byl719
1LT UniChem LINCS LSM-4256
1LT UniChem BindingDb 50436459
1LT UniChem 'EPA CompTox Dashboard' DTXSID70153355
1LT UniChem DrugCentral 5328
1LT UniChem BRENDA 256656
1LT UniChem ChemicalBook CB52604234
1LT UniChem DailyMed ALPELISIB
1LT UniChem ClinicalTrials ALPELISIB
1LT UniChem ClinicalTrials BYL719
1LT UniChem ClinicalTrials NVP-BYL719
1LT UniChem ClinicalTrials PIQRAY
1LT UniChem ClinicalTrials VIJOICE
1LT UniChem rxnorm ALPELISIB
1LT UniChem rxnorm PIQRAY
1LT UniChem MedChemExpress HY-15244
1LT UniChem 'Probes And Drugs' PD003422
1LT UniChem Nikkaji J3.400.910D
1LT UniChem 'PubChem TPHARMA' 134426754
1LT UniChem PubChem 56649450
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1LT C1 0.587 1.602 1.353 ETKDGv3 1
1LT C2 -1.184 0.344 0.659 ETKDGv3 2
1LT C3 -3.548 0.148 1.561 ETKDGv3 3
1LT O1 -4.924 -1.023 -2.034 ETKDGv3 4
1LT C11 3.162 2.430 -0.226 ETKDGv3 5
1LT C12 4.557 2.562 -0.677 ETKDGv3 6
1LT C13 4.695 0.171 -0.916 ETKDGv3 7
1LT C14 3.424 0.022 -0.482 ETKDGv3 8
1LT C15 5.576 -1.034 -1.269 ETKDGv3 9
1LT C16 6.859 -0.556 -1.993 ETKDGv3 10
1LT C17 4.830 -1.989 -2.233 ETKDGv3 11
1LT C18 5.980 -1.789 0.027 ETKDGv3 12
1LT F2 4.867 -2.303 0.669 ETKDGv3 13
1LT F 6.628 -0.931 0.899 ETKDGv3 14
1LT F1 6.831 -2.841 -0.268 ETKDGv3 15
1LT N4 5.246 1.503 -0.988 ETKDGv3 16
1LT C10 2.618 1.208 -0.112 ETKDGv3 17
1LT C9 1.213 1.023 0.311 ETKDGv3 18
1LT C 1.229 2.563 2.307 ETKDGv3 19
1LT S 0.091 -0.107 -0.493 ETKDGv3 20
1LT N -0.787 1.217 1.529 ETKDGv3 21
1LT N1 -2.512 -0.195 0.620 ETKDGv3 22
1LT O -3.287 0.901 2.538 ETKDGv3 23
1LT N2 -4.887 -0.362 1.406 ETKDGv3 24
1LT C7 -5.333 -1.221 0.316 ETKDGv3 25
1LT C8 -5.356 -0.466 -0.989 ETKDGv3 26
1LT N3 -5.893 0.856 -1.068 ETKDGv3 27
1LT C6 -6.736 -1.687 0.714 ETKDGv3 28
1LT C5 -7.198 -0.738 1.817 ETKDGv3 29
1LT C4 -5.933 -0.106 2.383 ETKDGv3 30
1LT H1 2.590 3.324 -0.019 ETKDGv3 31
1LT H2 5.011 3.540 -0.753 ETKDGv3 32
1LT H3 2.980 -0.958 -0.380 ETKDGv3 33
1LT H4 7.468 0.101 -1.335 ETKDGv3 34
1LT H5 7.494 -1.416 -2.294 ETKDGv3 35
1LT H6 6.599 0.014 -2.912 ETKDGv3 36
1LT H7 4.463 -1.432 -3.122 ETKDGv3 37
1LT H8 5.504 -2.799 -2.585 ETKDGv3 38
1LT H9 3.962 -2.477 -1.743 ETKDGv3 39
1LT H10 0.680 2.555 3.272 ETKDGv3 40
1LT H11 2.283 2.275 2.508 ETKDGv3 41
1LT H12 1.190 3.590 1.890 ETKDGv3 42
1LT H13 -2.716 -0.876 -0.142 ETKDGv3 43
1LT H14 -4.665 -2.107 0.236 ETKDGv3 44
1LT H15 -6.272 1.336 -0.223 ETKDGv3 45
1LT H16 -5.911 1.361 -1.982 ETKDGv3 46
1LT H17 -6.676 -2.719 1.127 ETKDGv3 47
1LT H18 -7.451 -1.693 -0.138 ETKDGv3 48
1LT H19 -7.847 0.051 1.379 ETKDGv3 49
1LT H20 -7.766 -1.280 2.605 ETKDGv3 50
1LT H21 -6.073 0.988 2.524 ETKDGv3 51
1LT H22 -5.661 -0.579 3.352 ETKDGv3 52
#