data_1OU
#
_chem_comp.id 1OU
_chem_comp.name "[(R)-amino(4-carbamimidamidophenyl)methyl]phosphonic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H13 N4 O3 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-04-15
_chem_comp.pdbx_modified_date 2013-06-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 244.188
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1OU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4K5N
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1OU O1 O1 O 0 1 N N N N N N 13.656 12.409 10.435 2.809 0.348 -1.544 O1 1OU 1
1OU P P P 0 1 N N N N N N 13.093 11.728 11.617 3.003 -0.384 -0.272 P 1OU 2
1OU O2 O2 O 0 1 N N N N N N 12.137 10.579 10.955 2.627 -1.936 -0.483 O2 1OU 3
1OU O3 O3 O 0 1 N N N N N N 14.265 11.158 12.606 4.541 -0.263 0.188 O3 1OU 4
1OU C6 C6 C 0 1 N N R N N N 12.177 12.974 12.536 1.926 0.333 1.012 C6 1OU 5
1OU N4 N4 N 0 1 N N N N N N 10.836 12.880 11.938 2.347 1.712 1.290 N4 1OU 6
1OU C5 C5 C 0 1 Y N N N N N 12.273 12.659 14.000 0.499 0.331 0.529 C5 1OU 7
1OU C7 C7 C 0 1 Y N N N N N 11.357 11.781 14.554 -0.344 -0.711 0.871 C7 1OU 8
1OU C8 C8 C 0 1 Y N N N N N 11.340 11.474 15.924 -1.653 -0.716 0.431 C8 1OU 9
1OU C2 C2 C 0 1 Y N N N N N 12.310 12.001 16.781 -2.122 0.327 -0.357 C2 1OU 10
1OU C3 C3 C 0 1 Y N N N N N 13.217 12.908 16.223 -1.274 1.372 -0.698 C3 1OU 11
1OU C4 C4 C 0 1 Y N N N N N 13.231 13.228 14.854 0.032 1.374 -0.250 C4 1OU 12
1OU N3 N3 N 0 1 N N N N N N 12.314 11.658 18.138 -3.447 0.325 -0.805 N3 1OU 13
1OU C1 C1 C 0 1 N N N N N N 12.542 10.413 18.613 -4.439 -0.220 -0.021 C1 1OU 14
1OU N1 N1 N 0 1 N N N N N N 13.057 9.515 17.843 -4.163 -0.635 1.184 N1 1OU 15
1OU N2 N2 N 0 1 N N N N N N 12.203 10.097 19.906 -5.720 -0.326 -0.508 N2 1OU 16
1OU H1 H1 H 0 1 N N N N N N 12.182 10.636 10.008 2.731 -2.477 0.311 H1 1OU 17
1OU H2 H2 H 0 1 N N N N N N 15.117 11.368 12.242 5.172 -0.625 -0.449 H2 1OU 18
1OU H3 H3 H 0 1 N N N N N N 12.642 13.946 12.316 2.003 -0.261 1.923 H3 1OU 19
1OU H4 H4 H 0 1 N N N N N N 10.227 13.540 12.378 2.286 2.283 0.460 H4 1OU 20
1OU H5 H5 H 0 1 N N N N N N 10.893 13.080 10.960 1.808 2.111 2.044 H5 1OU 21
1OU H7 H7 H 0 1 N N N N N N 10.628 11.315 13.908 0.022 -1.522 1.483 H7 1OU 22
1OU H8 H8 H 0 1 N N N N N N 10.572 10.826 16.318 -2.310 -1.530 0.697 H8 1OU 23
1OU H9 H9 H 0 1 N N N N N N 13.938 13.383 16.872 -1.636 2.185 -1.311 H9 1OU 24
1OU H10 H10 H 0 1 N N N N N N 13.974 13.907 14.462 0.691 2.189 -0.511 H10 1OU 25
1OU H11 H11 H 0 1 N N N N N N 12.136 12.384 18.802 -3.668 0.708 -1.669 H11 1OU 26
1OU H12 H12 H 0 1 N N N N N N 13.156 8.635 18.308 -4.861 -1.019 1.736 H12 1OU 27
1OU H13 H13 H 0 1 N N N N N N 11.787 10.788 20.497 -5.926 -0.018 -1.404 H13 1OU 28
1OU H14 H14 H 0 1 N N N N N N 12.372 9.176 20.256 -6.419 -0.711 0.045 H14 1OU 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1OU O1 P DOUB N N 1
1OU O2 P SING N N 2
1OU P C6 SING N N 3
1OU P O3 SING N N 4
1OU N4 C6 SING N N 5
1OU C6 C5 SING N N 6
1OU C5 C7 DOUB Y N 7
1OU C5 C4 SING Y N 8
1OU C7 C8 SING Y N 9
1OU C4 C3 DOUB Y N 10
1OU C8 C2 DOUB Y N 11
1OU C3 C2 SING Y N 12
1OU C2 N3 SING N N 13
1OU N1 C1 DOUB N N 14
1OU N3 C1 SING N N 15
1OU C1 N2 SING N N 16
1OU O2 H1 SING N N 17
1OU O3 H2 SING N N 18
1OU C6 H3 SING N N 19
1OU N4 H4 SING N N 20
1OU N4 H5 SING N N 21
1OU C7 H7 SING N N 22
1OU C8 H8 SING N N 23
1OU C3 H9 SING N N 24
1OU C4 H10 SING N N 25
1OU N3 H11 SING N N 26
1OU N1 H12 SING N N 27
1OU N2 H13 SING N N 28
1OU N2 H14 SING N N 29
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1OU SMILES ACDLabs 12.01 O=P(O)(O)C(c1ccc(NC(=[N@H])N)cc1)N
1OU InChI InChI 1.03 InChI=1S/C8H13N4O3P/c9-7(16(13,14)15)5-1-3-6(4-2-5)12-8(10)11/h1-4,7H,9H2,(H4,10,11,12)(H2,13,14,15)/t7-/m1/s1
1OU InChIKey InChI 1.03 BSLYPYFABFFNHY-SSDOTTSWSA-N
1OU SMILES_CANONICAL CACTVS 3.370 N[C@@H](c1ccc(NC(N)=N)cc1)[P](O)(O)=O
1OU SMILES CACTVS 3.370 N[CH](c1ccc(NC(N)=N)cc1)[P](O)(O)=O
1OU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(/N)\Nc1ccc(cc1)[C@H](N)P(=O)(O)O"
1OU SMILES "OpenEye OEToolkits" 1.7.6 c1cc(ccc1C(N)P(=O)(O)O)NC(=N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1OU "SYSTEMATIC NAME" ACDLabs 12.01 "[(R)-amino(4-carbamimidamidophenyl)methyl]phosphonic acid"
1OU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(R)-azanyl-(4-carbamimidamidophenyl)methyl]phosphonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1OU 'Create component' 2013-04-15 RCSB
1OU 'Initial release' 2013-06-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1OU O1 O 9.002 4.430 1
1OU P P 7.702 3.680 2
1OU O2 O 6.952 4.979 3
1OU O3 O 8.453 2.381 4
1OU C6 C 6.404 2.930 5
1OU N4 N 5.104 3.680 6
1OU C5 C 6.404 1.430 7
1OU C7 C 5.104 0.680 8
1OU C8 C 5.104 -0.820 9
1OU C2 C 6.404 -1.570 10
1OU C3 C 7.702 -0.820 11
1OU C4 C 7.702 0.680 12
1OU N3 N 6.404 -3.070 13
1OU C1 C 5.104 -3.820 14
1OU N1 N 5.104 -5.320 15
1OU N2 N 3.805 -3.070 16
1OU H12 H 6.404 -6.070 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1OU O1 P DOUBLE NONE 1
1OU O2 P SINGLE NONE 2
1OU P C6 SINGLE NONE 3
1OU P O3 SINGLE NONE 4
1OU C6 N4 SINGLE BEGINDASH 5
1OU C6 C5 SINGLE NONE 6
1OU C5 C7 DOUBLE NONE 7
1OU C5 C4 SINGLE NONE 8
1OU C7 C8 SINGLE NONE 9
1OU C4 C3 DOUBLE NONE 10
1OU C8 C2 DOUBLE NONE 11
1OU C3 C2 SINGLE NONE 12
1OU C2 N3 SINGLE NONE 13
1OU N1 C1 DOUBLE NONE 14
1OU N3 C1 SINGLE ENDDOWNRIGHT 15
1OU C1 N2 SINGLE ENDDOWNRIGHT 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1OU MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
1OU phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1OU C5 S1 1
1OU C7 S1 1
1OU C8 S1 1
1OU C2 S1 1
1OU C3 S1 1
1OU C4 S1 1
1OU C5 F1 1
1OU C7 F1 1
1OU C8 F1 1
1OU C2 F1 1
1OU C3 F1 1
1OU C4 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1OU
_pdbe_chem_comp_rdkit_properties.exactmw 244.073
_pdbe_chem_comp_rdkit_properties.amw 244.191
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.125
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 110.914
_pdbe_chem_comp_rdkit_properties.tpsa 145.450
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.308
_pdbe_chem_comp_rdkit_properties.CrippenMR 59.861
_pdbe_chem_comp_rdkit_properties.chi0v 8.355
_pdbe_chem_comp_rdkit_properties.chi1v 5.182
_pdbe_chem_comp_rdkit_properties.chi2v 2.049
_pdbe_chem_comp_rdkit_properties.chi3v 2.049
_pdbe_chem_comp_rdkit_properties.chi4v 1.096
_pdbe_chem_comp_rdkit_properties.chi0n 20.461
_pdbe_chem_comp_rdkit_properties.chi1n 9.639
_pdbe_chem_comp_rdkit_properties.chi2n 1.307
_pdbe_chem_comp_rdkit_properties.chi3n 1.307
_pdbe_chem_comp_rdkit_properties.chi4n 0.711
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.400
_pdbe_chem_comp_rdkit_properties.kappa1 3.545
_pdbe_chem_comp_rdkit_properties.kappa2 4.628
_pdbe_chem_comp_rdkit_properties.kappa3 3.319
_pdbe_chem_comp_rdkit_properties.Phi 1.025
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1OU UniChem PDBe 1OU
1OU UniChem ZINC ZINC000096927713
1OU UniChem PubChem 71563403
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1OU O1 4.880 -1.135 -0.409 ETKDGv3 1
1OU P 3.427 -0.821 -0.689 ETKDGv3 2
1OU O2 3.326 0.245 -2.000 ETKDGv3 3
1OU O3 2.612 -2.253 -1.077 ETKDGv3 4
1OU C6 2.667 -0.070 0.791 ETKDGv3 5
1OU N4 3.334 1.192 1.110 ETKDGv3 6
1OU C5 1.194 0.157 0.539 ETKDGv3 7
1OU C7 0.280 -0.711 1.009 ETKDGv3 8
1OU C8 -1.158 -0.510 0.732 ETKDGv3 9
1OU C2 -1.568 0.524 -0.026 ETKDGv3 10
1OU C3 -0.564 1.483 -0.541 ETKDGv3 11
1OU C4 0.737 1.308 -0.283 ETKDGv3 12
1OU N3 -2.962 0.763 -0.286 ETKDGv3 13
1OU C1 -3.939 -0.267 -0.511 ETKDGv3 14
1OU N1 -3.570 -1.485 -0.752 ETKDGv3 15
1OU N2 -5.328 0.074 -0.529 ETKDGv3 16
1OU H1 3.858 1.035 -1.729 ETKDGv3 17
1OU H2 2.662 -2.804 -0.256 ETKDGv3 18
1OU H3 2.808 -0.774 1.642 ETKDGv3 19
1OU H4 2.907 1.575 1.985 ETKDGv3 20
1OU H5 4.333 0.985 1.343 ETKDGv3 21
1OU H7 0.582 -1.569 1.596 ETKDGv3 22
1OU H8 -1.869 -1.195 1.173 ETKDGv3 23
1OU H9 -0.883 2.327 -1.139 ETKDGv3 24
1OU H10 1.457 2.014 -0.678 ETKDGv3 25
1OU H11 -3.268 1.754 -0.411 ETKDGv3 26
1OU H12 -4.263 -2.244 -0.940 ETKDGv3 27
1OU H13 -6.057 -0.652 -0.713 ETKDGv3 28
1OU H14 -5.633 1.056 -0.350 ETKDGv3 29
#