data_1RG
#
_chem_comp.id 1RG
_chem_comp.name
'(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid'
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C22 H27 N3 O7 S'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 'ERTAPENEM, bound form PRE-ISOMERIZED'
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-10-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 477.531
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1RG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3M6B
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1RG C C C 0 1 N N N N N N -7.131 -4.880 -0.102 -3.342 0.427 0.687 C 1RG 1
1RG N N N 0 1 N N N N N N -7.024 -4.606 2.353 -1.288 -0.611 1.533 N 1RG 2
1RG O O O 0 1 N N N N N N -8.273 -4.549 -0.020 -3.730 -0.695 0.437 O 1RG 3
1RG CA CA C 0 1 N N S N N N -6.214 -4.940 1.154 -1.906 0.655 1.087 CA 1RG 4
1RG CB CB C 0 1 N N N N N N -5.752 -6.378 1.386 -1.069 1.093 -0.141 CB 1RG 5
1RG CD CD C 0 1 N N N N N N -6.794 -5.664 3.356 0.113 -0.637 1.075 CD 1RG 6
1RG CG CG C 0 1 N N S N N N -6.619 -6.922 2.546 0.360 0.667 0.287 CG 1RG 7
1RG CAA CAA C 0 1 N N N N N N -11.629 -11.069 4.987 6.267 0.879 -1.126 CAA 1RG 8
1RG CAB CAB C 0 1 N N S N N N -10.241 -11.488 4.412 6.227 0.988 0.377 CAB 1RG 9
1RG OAC OAC O 0 1 N N N N N N -12.424 -10.633 4.195 6.398 1.873 -1.799 OAC 1RG 10
1RG CAD CAD C 0 1 N N S N N N -9.188 -10.367 4.753 4.974 0.287 0.906 CAD 1RG 11
1RG CAE CAE C 0 1 N N R N N N -9.722 -12.925 4.739 7.471 0.322 0.970 CAE 1RG 12
1RG CAF CAF C 0 1 N N N N N N -9.449 -13.135 6.243 7.431 0.432 2.495 CAF 1RG 13
1RG OAG OAG O 0 1 N N N N N N -10.664 -13.861 4.291 7.500 -1.056 0.592 OAG 1RG 14
1RG CAH CAH C 0 1 N N R N N N -8.336 -9.934 3.531 3.709 1.046 0.465 CAH 1RG 15
1RG CAI CAI C 0 1 N N N N N N -8.865 -8.515 3.232 2.943 0.051 -0.376 CAI 1RG 16
1RG NAJ NAJ N 0 1 N N N N N N -10.008 -9.156 5.036 4.838 -1.044 0.301 NAJ 1RG 17
1RG SAK SAK S 0 1 N N N N N N -8.213 -7.587 1.838 1.396 0.351 -1.163 SAK 1RG 18
1RG CAL CAL C 0 1 N N N N N N -9.771 -8.149 4.214 3.636 -1.102 -0.425 CAL 1RG 19
1RG CAM CAM C 0 1 N N N N N N -10.416 -7.028 4.314 3.201 -2.248 -1.130 CAM 1RG 20
1RG CAS CAS C 0 1 N N N N N N -8.494 -10.789 2.263 4.086 2.272 -0.370 CAS 1RG 21
1RG OAT OAT O 0 1 N N N N N N -10.389 -6.165 3.504 2.197 -2.197 -1.815 OAT 1RG 22
1RG OAU OAU O 0 1 N N N N N N -10.934 -6.878 5.392 3.901 -3.400 -1.044 OAU 1RG 23
1RG NAX NAX N 0 1 N N N N N N -6.552 -5.142 -1.266 -4.192 1.469 0.604 NAX 1RG 24
1RG CAY CAY C 0 1 Y N N N N N -7.130 -5.193 -2.477 -5.494 1.273 0.129 CAY 1RG 25
1RG CAZ CAZ C 0 1 Y N N N N N -6.535 -5.952 -3.444 -6.168 0.098 0.420 CAZ 1RG 26
1RG CBA CBA C 0 1 Y N N N N N -7.089 -6.051 -4.720 -7.466 -0.092 -0.055 CBA 1RG 27
1RG CBB CBB C 0 1 Y N N N N N -8.240 -5.399 -5.020 -8.077 0.904 -0.821 CBB 1RG 28
1RG CBC CBC C 0 1 Y N N N N N -8.810 -4.632 -4.079 -7.396 2.070 -1.106 CBC 1RG 29
1RG CBD CBD C 0 1 Y N N N N N -8.263 -4.526 -2.837 -6.112 2.260 -0.630 CBD 1RG 30
1RG CBE CBE C 0 1 N N N N N N -6.479 -6.908 -5.812 -8.193 -1.342 0.250 CBE 1RG 31
1RG OBF OBF O 0 1 N N N N N N -7.112 -7.117 -6.846 -9.446 -1.523 -0.210 OBF 1RG 32
1RG OBG OBG O 0 1 N N N N N N -5.370 -7.367 -5.562 -7.659 -2.206 0.917 OBG 1RG 33
1RG HN HN H 0 1 N N N N N N -6.740 -3.720 2.720 -1.342 -0.705 2.537 HN 1RG 34
1RG HA HA H 0 1 N N N N N N -5.355 -4.262 1.041 -1.848 1.406 1.875 HA 1RG 35
1RG HB HB H 0 1 N N N N N N -5.906 -6.980 0.478 -1.383 0.560 -1.038 HB 1RG 36
1RG HBA HBA H 0 1 N N N N N N -4.688 -6.398 1.663 -1.126 2.171 -0.288 HBA 1RG 37
1RG HD HD H 0 1 N N N N N N -5.889 -5.452 3.944 0.783 -0.685 1.934 HD 1RG 38
1RG HDA HDA H 0 1 N N N N N N -7.658 -5.754 4.031 0.275 -1.498 0.427 HDA 1RG 39
1RG HG HG H 0 1 N N N N N N -6.120 -7.729 3.102 0.813 1.424 0.928 HG 1RG 40
1RG HAA HAA H 0 1 N N N N N N -11.864 -11.165 6.037 6.179 -0.087 -1.600 HAA 1RG 41
1RG HAB HAB H 0 1 N N N N N N -10.354 -11.458 3.318 6.205 2.039 0.665 HAB 1RG 42
1RG HAD HAD H 0 1 N N N N N N -8.556 -10.658 5.605 5.012 0.211 1.992 HAD 1RG 43
1RG HAE HAE H 0 1 N N N N N N -8.773 -13.067 4.201 8.364 0.821 0.593 HAE 1RG 44
1RG HAF HAF H 0 1 N N N N N N -9.088 -14.160 6.411 8.317 -0.042 2.917 HAF 1RG 45
1RG HAFA HAFA H 0 0 N N N N N N -8.687 -12.418 6.581 7.409 1.483 2.783 HAFA 1RG 46
1RG HAFB HAFB H 0 0 N N N N N N -10.378 -12.977 6.810 6.538 -0.067 2.872 HAFB 1RG 47
1RG HOAG HOAG H 0 0 N N N N N N -10.357 -14.739 4.486 8.264 -1.541 0.933 HOAG 1RG 48
1RG HAH HAH H 0 1 N N N N N N -7.275 -9.883 3.818 3.122 1.343 1.334 HAH 1RG 49
1RG HNAJ HNAJ H 0 0 N N N N N N -10.974 -9.404 4.961 5.476 -1.769 0.388 HNAJ 1RG 50
1RG HAS HAS H 0 1 N N N N N N -7.846 -10.390 1.468 4.480 1.949 -1.333 HAS 1RG 51
1RG HASA HASA H 0 0 N N N N N N -8.207 -11.828 2.483 3.202 2.890 -0.527 HASA 1RG 52
1RG HASB HASB H 0 0 N N N N N N -9.542 -10.761 1.930 4.844 2.851 0.157 HASB 1RG 53
1RG HNAX HNAX H 0 0 N N N N N N -5.569 -5.323 -1.239 -3.902 2.355 0.872 HNAX 1RG 54
1RG HAZ HAZ H 0 1 N N N N N N -5.622 -6.483 -3.217 -5.691 -0.668 1.013 HAZ 1RG 55
1RG HBB HBB H 0 1 N N N N N N -8.689 -5.496 -5.998 -9.081 0.760 -1.192 HBB 1RG 56
1RG HBC HBC H 0 1 N N N N N N -9.716 -4.091 -4.310 -7.870 2.839 -1.699 HBC 1RG 57
1RG HBD HBD H 0 1 N N N N N N -8.745 -3.890 -2.110 -5.587 3.177 -0.852 HBD 1RG 58
1RG HOAU HOAU H 0 0 N N N N N N -11.287 -5.998 5.454 3.527 -4.127 -1.560 HOAU 1RG 59
1RG HOBF HOBF H 0 0 N N N N N N -6.609 -7.686 -7.416 -9.880 -2.356 0.016 HOBF 1RG 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1RG C O DOUB N N 1
1RG C CA SING N N 2
1RG C NAX SING N N 3
1RG N CA SING N N 4
1RG N CD SING N N 5
1RG CA CB SING N N 6
1RG CB CG SING N N 7
1RG CD CG SING N N 8
1RG CG SAK SING N N 9
1RG CAA CAB SING N N 10
1RG CAA OAC DOUB N N 11
1RG CAB CAD SING N N 12
1RG CAB CAE SING N N 13
1RG CAD CAH SING N N 14
1RG CAD NAJ SING N N 15
1RG CAE CAF SING N N 16
1RG CAE OAG SING N N 17
1RG CAH CAI SING N N 18
1RG CAH CAS SING N N 19
1RG CAI SAK SING N N 20
1RG CAI CAL DOUB N N 21
1RG NAJ CAL SING N N 22
1RG CAL CAM SING N N 23
1RG CAM OAT DOUB N N 24
1RG CAM OAU SING N N 25
1RG NAX CAY SING N N 26
1RG CAY CAZ DOUB Y N 27
1RG CAY CBD SING Y N 28
1RG CAZ CBA SING Y N 29
1RG CBA CBB DOUB Y N 30
1RG CBA CBE SING N N 31
1RG CBB CBC SING Y N 32
1RG CBC CBD DOUB Y N 33
1RG CBE OBF SING N N 34
1RG CBE OBG DOUB N N 35
1RG N HN SING N N 36
1RG CA HA SING N N 37
1RG CB HB SING N N 38
1RG CB HBA SING N N 39
1RG CD HD SING N N 40
1RG CD HDA SING N N 41
1RG CG HG SING N N 42
1RG CAA HAA SING N N 43
1RG CAB HAB SING N N 44
1RG CAD HAD SING N N 45
1RG CAE HAE SING N N 46
1RG CAF HAF SING N N 47
1RG CAF HAFA SING N N 48
1RG CAF HAFB SING N N 49
1RG OAG HOAG SING N N 50
1RG CAH HAH SING N N 51
1RG NAJ HNAJ SING N N 52
1RG CAS HAS SING N N 53
1RG CAS HASA SING N N 54
1RG CAS HASB SING N N 55
1RG NAX HNAX SING N N 56
1RG CAZ HAZ SING N N 57
1RG CBB HBB SING N N 58
1RG CBC HBC SING N N 59
1RG CBD HBD SING N N 60
1RG OAU HOAU SING N N 61
1RG OBF HOBF SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1RG SMILES ACDLabs 12.01 'O=C(O)c1cc(ccc1)NC(=O)C3NCC(SC2=C(C(=O)O)NC(C2C)C(C=O)C(O)C)C3'
1RG InChI InChI 1.03 'InChI=1S/C22H27N3O7S/c1-10-17(15(9-26)11(2)27)25-18(22(31)32)19(10)33-14-7-16(23-8-14)20(28)24-13-5-3-4-12(6-13)21(29)30/h3-6,9-11,14-17,23,25,27H,7-8H2,1-2H3,(H,24,28)(H,29,30)(H,31,32)/t10-,11-,14+,15-,16+,17-/m1/s1'
1RG InChIKey InChI 1.03 PGRRQYXTRXQDDJ-SKHPLXCOSA-N
1RG SMILES_CANONICAL CACTVS 3.370 'C[C@@H](O)[C@@H](C=O)[C@@H]1NC(=C(S[C@@H]2CN[C@@H](C2)C(=O)Nc3cccc(c3)C(O)=O)[C@@H]1C)C(O)=O'
1RG SMILES CACTVS 3.370 'C[CH](O)[CH](C=O)[CH]1NC(=C(S[CH]2CN[CH](C2)C(=O)Nc3cccc(c3)C(O)=O)[CH]1C)C(O)=O'
1RG SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.6 'C[C@@H]1[C@@H](NC(=C1S[C@H]2C[C@H](NC2)C(=O)Nc3cccc(c3)C(=O)O)C(=O)O)[C@H](C=O)[C@@H](C)O'
1RG SMILES 'OpenEye OEToolkits' 1.7.6 'CC1C(NC(=C1SC2CC(NC2)C(=O)Nc3cccc(c3)C(=O)O)C(=O)O)C(C=O)C(C)O'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1RG 'SYSTEMATIC NAME' ACDLabs 12.01 '(4R,5S)-3-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-dihydro-1H-pyrrole-2-carboxylic acid'
1RG 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.6 '(2S,3R)-4-[(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-2-[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2,3-dihydro-1H-pyrrole-5-carboxylic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1RG 'Create component' 2009-10-19 RCSB
1RG 'Modify aromatic_flag' 2011-06-04 RCSB
1RG 'Modify descriptor' 2011-06-04 RCSB
1RG 'Modify synonyms' 2012-05-09 RCSB
1RG 'Modify synonyms' 2021-03-13 RCSB
1RG 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 1RG
_pdbx_chem_comp_synonyms.name 'ERTAPENEM, bound form PRE-ISOMERIZED'
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
_pdbx_chem_comp_pcm.first_instance_model_db_code
1 1RG CYS None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' CAA SG ? ? 3ZGP
2 1RG SER None 'Covalent chemical modification' 'Amino-acid side chain' 'Any position' CAA OG ? ? 3M6B
#
_pdbe_chem_comp_synonyms.comp_id 1RG
_pdbe_chem_comp_synonyms.name 'ERTAPENEM, bound form PRE-ISOMERIZED'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1RG C C 8.196 -2.455 1
1RG N N 6.983 -0.074 2
1RG O O 9.495 -3.205 3
1RG CA C 8.196 -0.955 4
1RG CB C 9.410 -0.074 5
1RG CD C 7.446 1.353 6
1RG CG C 8.946 1.353 7
1RG CAA C 4.996 5.740 8
1RG CAB C 6.295 6.490 9
1RG OAC O 3.697 6.490 10
1RG CAD C 7.594 5.740 11
1RG CAE C 6.295 7.990 12
1RG CAF C 4.996 8.740 13
1RG OAG O 7.594 8.740 14
1RG CAH C 7.750 4.249 15
1RG CAI C 9.218 3.937 16
1RG NAJ N 8.964 6.351 17
1RG SAK S 9.828 2.566 18
1RG CAL C 9.968 5.236 19
1RG CAM C 11.460 5.393 20
1RG CAS C 6.636 3.245 21
1RG OAT O 12.070 6.763 22
1RG OAU O 12.341 4.179 23
1RG NAX N 6.897 -3.205 24
1RG CAY C 6.897 -4.705 25
1RG CAZ C 5.598 -5.455 26
1RG CBA C 5.598 -6.955 27
1RG CBB C 6.897 -7.705 28
1RG CBC C 8.196 -6.955 29
1RG CBD C 8.196 -5.455 30
1RG CBE C 4.299 -7.705 31
1RG OBF O 4.299 -9.205 32
1RG OBG O 3.000 -6.955 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1RG C O DOUBLE NONE 1
1RG CA C SINGLE BEGINWEDGE 2
1RG C NAX SINGLE NONE 3
1RG N CA SINGLE NONE 4
1RG N CD SINGLE NONE 5
1RG CA CB SINGLE NONE 6
1RG CB CG SINGLE NONE 7
1RG CD CG SINGLE NONE 8
1RG CG SAK SINGLE BEGINWEDGE 9
1RG CAB CAA SINGLE BEGINDASH 10
1RG CAA OAC DOUBLE NONE 11
1RG CAB CAD SINGLE NONE 12
1RG CAB CAE SINGLE NONE 13
1RG CAD CAH SINGLE NONE 14
1RG CAD NAJ SINGLE BEGINDASH 15
1RG CAE CAF SINGLE BEGINWEDGE 16
1RG CAE OAG SINGLE NONE 17
1RG CAH CAI SINGLE NONE 18
1RG CAH CAS SINGLE BEGINDASH 19
1RG CAI SAK SINGLE NONE 20
1RG CAI CAL DOUBLE NONE 21
1RG NAJ CAL SINGLE NONE 22
1RG CAL CAM SINGLE NONE 23
1RG CAM OAT DOUBLE NONE 24
1RG CAM OAU SINGLE NONE 25
1RG NAX CAY SINGLE NONE 26
1RG CAY CAZ DOUBLE NONE 27
1RG CAY CBD SINGLE NONE 28
1RG CAZ CBA SINGLE NONE 29
1RG CBA CBB DOUBLE NONE 30
1RG CBA CBE SINGLE NONE 31
1RG CBB CBC SINGLE NONE 32
1RG CBC CBD DOUBLE NONE 33
1RG CBE OBF SINGLE NONE 34
1RG CBE OBG DOUBLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1RG MurckoScaffold S1 scaffold 'O=C(Nc1ccccc1)[C@@H]1C[C@H](SC2=CNCC2)CN1' InChI=1S/C15H19N3OS/c19-15(18-11-4-2-1-3-5-11)14-8-13(10-17-14)20-12-6-7-16-9-12/h1-5,9,13-14,16-17H,6-8,10H2,(H,18,19)/t13-,14-/m0/s1 YLJYUSBDENSAOF-KBPBESRZSA-N
1RG amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1RG peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
1RG phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
1RG 2-pyrroline F4 fragment C1=CNCC1 InChI=1S/C4H7N/c1-2-4-5-3-1/h1,3,5H,2,4H2 RSEBUVRVKCANEP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1RG C S1 1
1RG N S1 1
1RG O S1 1
1RG CA S1 1
1RG CB S1 1
1RG CD S1 1
1RG CG S1 1
1RG CAD S1 1
1RG CAH S1 1
1RG CAI S1 1
1RG NAJ S1 1
1RG SAK S1 1
1RG CAL S1 1
1RG NAX S1 1
1RG CAY S1 1
1RG CAZ S1 1
1RG CBA S1 1
1RG CBB S1 1
1RG CBC S1 1
1RG CBD S1 1
1RG NAX F1 1
1RG C F1 1
1RG O F1 1
1RG CA F1 1
1RG O F2 1
1RG C F2 1
1RG CA F2 1
1RG N F2 1
1RG OAT F2 2
1RG CAM F2 2
1RG CAL F2 2
1RG NAJ F2 2
1RG CAY F3 1
1RG CAZ F3 1
1RG CBA F3 1
1RG CBB F3 1
1RG CBC F3 1
1RG CBD F3 1
1RG CAD F4 1
1RG CAH F4 1
1RG CAI F4 1
1RG CAL F4 1
1RG NAJ F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1RG
_pdbe_chem_comp_rdkit_properties.exactmw 477.157
_pdbe_chem_comp_rdkit_properties.amw 477.539
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.455
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 232.739
_pdbe_chem_comp_rdkit_properties.tpsa 165.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.452
_pdbe_chem_comp_rdkit_properties.CrippenMR 120.712
_pdbe_chem_comp_rdkit_properties.chi0v 16.424
_pdbe_chem_comp_rdkit_properties.chi1v 8.995
_pdbe_chem_comp_rdkit_properties.chi2v 4.598
_pdbe_chem_comp_rdkit_properties.chi3v 4.598
_pdbe_chem_comp_rdkit_properties.chi4v 3.101
_pdbe_chem_comp_rdkit_properties.chi0n 42.608
_pdbe_chem_comp_rdkit_properties.chi1n 21.245
_pdbe_chem_comp_rdkit_properties.chi2n 3.599
_pdbe_chem_comp_rdkit_properties.chi3n 3.599
_pdbe_chem_comp_rdkit_properties.chi4n 2.233
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.890
_pdbe_chem_comp_rdkit_properties.kappa1 7.303
_pdbe_chem_comp_rdkit_properties.kappa2 10.364
_pdbe_chem_comp_rdkit_properties.kappa3 5.546
_pdbe_chem_comp_rdkit_properties.Phi 2.293
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1RG UniChem PDBe 1RG
1RG UniChem ZINC ZINC000103522323
1RG UniChem PubChem 49866424
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1RG C -2.571 1.515 -2.246 ETKDGv3 1
1RG N -2.101 3.363 -0.730 ETKDGv3 2
1RG O -2.630 1.440 -3.503 ETKDGv3 3
1RG CA -1.497 2.356 -1.611 ETKDGv3 4
1RG CB -0.535 1.511 -0.780 ETKDGv3 5
1RG CD -1.454 3.238 0.577 ETKDGv3 6
1RG CG -0.202 2.397 0.398 ETKDGv3 7
1RG CAA 4.119 -2.537 -0.812 ETKDGv3 8
1RG CAB 4.524 -1.477 0.185 ETKDGv3 9
1RG OAC 3.125 -3.222 -0.644 ETKDGv3 10
1RG CAD 3.501 -0.296 0.189 ETKDGv3 11
1RG CAE 4.916 -2.096 1.561 ETKDGv3 12
1RG CAF 6.187 -2.955 1.455 ETKDGv3 13
1RG OAG 5.094 -1.105 2.541 ETKDGv3 14
1RG CAH 2.044 -0.449 0.732 ETKDGv3 15
1RG CAI 1.804 0.901 1.349 ETKDGv3 16
1RG NAJ 4.021 0.876 0.876 ETKDGv3 17
1RG SAK 0.182 1.445 1.915 ETKDGv3 18
1RG CAL 2.942 1.581 1.465 ETKDGv3 19
1RG CAM 3.117 2.917 2.070 ETKDGv3 20
1RG CAS 1.794 -1.521 1.798 ETKDGv3 21
1RG OAT 4.256 3.457 2.061 ETKDGv3 22
1RG OAU 2.051 3.591 2.658 ETKDGv3 23
1RG NAX -3.536 0.833 -1.429 ETKDGv3 24
1RG CAY -4.424 -0.186 -1.919 ETKDGv3 25
1RG CAZ -5.634 -0.340 -1.355 ETKDGv3 26
1RG CBA -6.568 -1.395 -1.829 ETKDGv3 27
1RG CBB -6.177 -2.215 -2.823 ETKDGv3 28
1RG CBC -4.837 -2.073 -3.424 ETKDGv3 29
1RG CBD -4.004 -1.119 -2.996 ETKDGv3 30
1RG CBE -7.904 -1.528 -1.208 ETKDGv3 31
1RG OBF -8.285 -0.668 -0.182 ETKDGv3 32
1RG OBG -8.709 -2.417 -1.599 ETKDGv3 33
1RG HN -1.891 4.315 -1.114 ETKDGv3 34
1RG HA -0.911 2.865 -2.413 ETKDGv3 35
1RG HB 0.378 1.255 -1.362 ETKDGv3 36
1RG HBA -1.019 0.573 -0.426 ETKDGv3 37
1RG HD -1.199 4.236 0.999 ETKDGv3 38
1RG HDA -2.164 2.737 1.270 ETKDGv3 39
1RG HG 0.648 3.067 0.135 ETKDGv3 40
1RG HAA 4.727 -2.696 -1.698 ETKDGv3 41
1RG HAB 5.459 -1.033 -0.225 ETKDGv3 42
1RG HAD 3.392 0.004 -0.879 ETKDGv3 43
1RG HAE 4.120 -2.782 1.909 ETKDGv3 44
1RG HAF 7.042 -2.350 1.085 ETKDGv3 45
1RG HAFA 6.448 -3.364 2.454 ETKDGv3 46
1RG HAFB 6.024 -3.809 0.763 ETKDGv3 47
1RG HOAG 5.874 -0.553 2.270 ETKDGv3 48
1RG HAH 1.341 -0.616 -0.112 ETKDGv3 49
1RG HNAJ 4.965 1.288 0.699 ETKDGv3 50
1RG HAS 2.440 -1.364 2.687 ETKDGv3 51
1RG HASA 0.738 -1.468 2.139 ETKDGv3 52
1RG HASB 1.933 -2.537 1.386 ETKDGv3 53
1RG HNAX -3.632 1.133 -0.432 ETKDGv3 54
1RG HAZ -5.938 0.324 -0.554 ETKDGv3 55
1RG HBB -6.830 -2.995 -3.194 ETKDGv3 56
1RG HBC -4.524 -2.756 -4.203 ETKDGv3 57
1RG HBD -3.012 -1.056 -3.423 ETKDGv3 58
1RG HOAU 2.178 4.507 3.071 ETKDGv3 59
1RG HOBF -9.197 -0.747 0.252 ETKDGv3 60
#