data_1S1
#
_chem_comp.id 1S1
_chem_comp.name 2-ethyl-2-{[4-(methylamino)-6-(1H-1,2,4-triazol-1-yl)-1,3,5-triazin-2-yl]amino}butanenitrile
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H17 N9"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-05-14
_chem_comp.pdbx_modified_date 2013-07-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 287.324
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1S1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4KP6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1S1 C3 C3 C 0 1 Y N N N N N -41.507 90.884 116.192 -0.435 -0.380 0.075 C3 INX 1
1S1 C4 C4 C 0 1 Y N N N N N -39.869 90.745 114.507 1.852 -0.132 0.031 C4 INX 2
1S1 C7 C7 C 0 1 Y N N N N N -39.455 89.838 116.624 0.491 1.717 -0.119 C7 INX 3
1S1 N10 N10 N 0 1 Y N N N N N -39.357 92.183 111.324 5.266 -0.916 0.069 N10 INX 4
1S1 C12 C12 C 0 1 Y N N N N N -38.305 91.370 111.494 4.750 -2.140 0.185 C12 INX 5
1S1 N13 N13 N 0 1 N N N N N N -38.612 89.174 117.476 0.342 3.084 -0.236 N13 INX 6
1S1 C15 C15 C 0 1 N N N N N N -43.807 91.802 115.659 -2.889 -0.604 0.125 C15 INX 7
1S1 C16 C16 C 0 1 N N N N N N -44.959 92.241 116.581 -3.936 -1.715 0.234 C16 INX 8
1S1 C17 C17 C 0 1 N N N N N N -46.210 92.778 115.903 -5.336 -1.100 0.198 C17 INX 9
1S1 C18 C18 C 0 1 N N N N N N -44.219 90.704 114.651 -3.081 0.150 -1.192 C18 INX 10
1S1 C19 C19 C 0 1 N N N N N N -44.838 89.474 115.312 -2.919 -0.821 -2.364 C19 INX 11
1S1 N21 N21 N 0 1 N N N N N N -42.973 93.821 114.211 -3.164 1.050 2.122 N21 INX 12
1S1 C20 C20 C 0 1 N N N N N N -43.345 92.952 114.881 -3.044 0.330 1.252 C20 INX 13
1S1 N1 N1 N 0 1 N N N N N N -42.770 91.292 116.565 -1.548 -1.193 0.160 N1 INX 14
1S1 N5 N5 N 0 1 Y N N N N N -40.673 90.272 117.067 -0.581 0.936 -0.038 N5 INX 15
1S1 C14 C14 C 0 1 N N N N N N -37.354 88.598 117.049 1.524 3.945 -0.326 C14 INX 16
1S1 N6 N6 N 0 1 Y N N N N N -39.023 90.121 115.357 1.708 1.182 -0.087 N6 INX 17
1S1 N2 N2 N 0 1 Y N N N N N -41.104 91.161 114.916 0.783 -0.914 0.112 N2 INX 18
1S1 N8 N8 N 0 1 Y N N N N N -39.424 91.095 113.185 3.128 -0.692 0.070 N8 INX 19
1S1 N11 N11 N 0 1 Y N N N N N -38.351 90.730 112.644 3.446 -2.055 0.190 N11 INX 20
1S1 C9 C9 C 0 1 Y N N N N N -40.055 92.013 112.441 4.303 -0.033 -0.001 C9 INX 21
1S1 H1 H1 H 0 1 N N N N N N -37.511 91.253 110.771 5.319 -3.055 0.262 H1 INX 22
1S1 H2 H2 H 0 1 N N N N N N -38.386 89.824 118.202 -0.545 3.475 -0.259 H2 INX 23
1S1 H3 H3 H 0 1 N N N N N N -45.254 91.369 117.183 -3.820 -2.406 -0.600 H3 INX 24
1S1 H4 H4 H 0 1 N N N N N N -44.574 93.031 117.243 -3.799 -2.252 1.173 H4 INX 25
1S1 H5 H5 H 0 1 N N N N N N -46.952 93.055 116.667 -5.473 -0.563 -0.740 H5 INX 26
1S1 H6 H6 H 0 1 N N N N N N -45.951 93.665 115.305 -6.082 -1.891 0.276 H6 INX 27
1S1 H7 H7 H 0 1 N N N N N N -46.632 92.003 115.246 -5.452 -0.409 1.033 H7 INX 28
1S1 H8 H8 H 0 1 N N N N N N -43.324 90.388 114.095 -4.079 0.587 -1.218 H8 INX 29
1S1 H9 H9 H 0 1 N N N N N N -44.953 91.131 113.952 -2.335 0.941 -1.270 H9 INX 30
1S1 H10 H10 H 0 1 N N N N N N -45.106 88.738 114.540 -3.056 -0.284 -3.303 H10 INX 31
1S1 H11 H11 H 0 1 N N N N N N -44.112 89.028 116.008 -1.921 -1.259 -2.338 H11 INX 32
1S1 H12 H12 H 0 1 N N N N N N -45.742 89.771 115.865 -3.665 -1.612 -2.286 H12 INX 33
1S1 H13 H13 H 0 1 N N N N N N -42.625 92.019 117.236 -1.441 -2.153 0.242 H13 INX 34
1S1 H14 H14 H 0 1 N N N N N N -36.859 88.120 117.907 1.210 4.986 -0.412 H14 INX 35
1S1 H15 H15 H 0 1 N N N N N N -37.541 87.846 116.269 2.131 3.823 0.571 H15 INX 36
1S1 H16 H16 H 0 1 N N N N N N -36.706 89.390 116.646 2.110 3.669 -1.202 H16 INX 37
1S1 H17 H17 H 0 1 N N N N N N -40.969 92.524 112.703 4.427 1.035 -0.099 H17 INX 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1S1 N10 C12 SING Y N 1
1S1 N10 C9 DOUB Y N 2
1S1 C12 N11 DOUB Y N 3
1S1 C9 N8 SING Y N 4
1S1 N11 N8 SING Y N 5
1S1 N8 C4 SING N N 6
1S1 N21 C20 TRIP N N 7
1S1 C4 N2 DOUB Y N 8
1S1 C4 N6 SING Y N 9
1S1 C18 C19 SING N N 10
1S1 C18 C15 SING N N 11
1S1 C20 C15 SING N N 12
1S1 N2 C3 SING Y N 13
1S1 N6 C7 DOUB Y N 14
1S1 C15 N1 SING N N 15
1S1 C15 C16 SING N N 16
1S1 C17 C16 SING N N 17
1S1 C3 N1 SING N N 18
1S1 C3 N5 DOUB Y N 19
1S1 C7 N5 SING Y N 20
1S1 C7 N13 SING N N 21
1S1 C14 N13 SING N N 22
1S1 C12 H1 SING N N 23
1S1 N13 H2 SING N N 24
1S1 C16 H3 SING N N 25
1S1 C16 H4 SING N N 26
1S1 C17 H5 SING N N 27
1S1 C17 H6 SING N N 28
1S1 C17 H7 SING N N 29
1S1 C18 H8 SING N N 30
1S1 C18 H9 SING N N 31
1S1 C19 H10 SING N N 32
1S1 C19 H11 SING N N 33
1S1 C19 H12 SING N N 34
1S1 N1 H13 SING N N 35
1S1 C14 H14 SING N N 36
1S1 C14 H15 SING N N 37
1S1 C14 H16 SING N N 38
1S1 C9 H17 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1S1 SMILES ACDLabs 12.01 "N#CC(Nc1nc(nc(n1)n2ncnc2)NC)(CC)CC"
1S1 InChI InChI 1.03 InChI=1S/C12H17N9/c1-4-12(5-2,6-13)20-10-17-9(14-3)18-11(19-10)21-8-15-7-16-21/h7-8H,4-5H2,1-3H3,(H2,14,17,18,19,20)
1S1 InChIKey InChI 1.03 AQTLNSKLZWRJEV-UHFFFAOYSA-N
1S1 SMILES_CANONICAL CACTVS 3.370 "CCC(CC)(Nc1nc(NC)nc(n1)n2cncn2)C#N"
1S1 SMILES CACTVS 3.370 "CCC(CC)(Nc1nc(NC)nc(n1)n2cncn2)C#N"
1S1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC(CC)(C#N)Nc1nc(nc(n1)n2cncn2)NC"
1S1 SMILES "OpenEye OEToolkits" 1.7.6 "CCC(CC)(C#N)Nc1nc(nc(n1)n2cncn2)NC"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1S1 "SYSTEMATIC NAME" ACDLabs 12.01 2-ethyl-2-{[4-(methylamino)-6-(1H-1,2,4-triazol-1-yl)-1,3,5-triazin-2-yl]amino}butanenitrile
1S1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 2-ethyl-2-[[4-(methylamino)-6-(1,2,4-triazol-1-yl)-1,3,5-triazin-2-yl]amino]butanenitrile
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1S1 'Create component' 2013-05-14 RCSB
1S1 'Initial release' 2013-07-10 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1S1 C3 C 8.196 0.951 1
1S1 C4 C 10.794 0.951 2
1S1 C7 C 9.495 -1.299 3
1S1 N10 N 14.467 2.206 4
1S1 C12 C 13.717 3.505 5
1S1 N13 N 9.495 -2.799 6
1S1 C15 C 5.598 0.951 7
1S1 C16 C 6.348 -0.348 8
1S1 C17 C 7.098 -1.647 9
1S1 C18 C 4.299 0.201 10
1S1 C19 C 3.000 0.951 11
1S1 N21 N 5.598 3.549 12
1S1 C20 C 4.848 2.250 13
1S1 N1 N 6.897 1.701 14
1S1 N5 N 8.196 -0.549 15
1S1 C14 C 10.794 -3.549 16
1S1 N6 N 10.794 -0.549 17
1S1 N2 N 9.495 1.701 18
1S1 N8 N 12.093 1.701 19
1S1 N11 N 12.250 3.193 20
1S1 C9 C 13.463 1.091 21
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1S1 N10 C12 SINGLE NONE 1
1S1 N10 C9 DOUBLE NONE 2
1S1 C12 N11 DOUBLE NONE 3
1S1 C9 N8 SINGLE NONE 4
1S1 N11 N8 SINGLE NONE 5
1S1 N8 C4 SINGLE NONE 6
1S1 N21 C20 TRIPLE NONE 7
1S1 C4 N2 SINGLE NONE 8
1S1 C4 N6 DOUBLE NONE 9
1S1 C18 C19 SINGLE NONE 10
1S1 C18 C15 SINGLE NONE 11
1S1 C20 C15 SINGLE NONE 12
1S1 N2 C3 DOUBLE NONE 13
1S1 N6 C7 SINGLE NONE 14
1S1 C15 N1 SINGLE NONE 15
1S1 C15 C16 SINGLE NONE 16
1S1 C17 C16 SINGLE NONE 17
1S1 C3 N1 SINGLE NONE 18
1S1 C3 N5 SINGLE NONE 19
1S1 C7 N5 DOUBLE NONE 20
1S1 C7 N13 SINGLE NONE 21
1S1 C14 N13 SINGLE NONE 22
#
_pdbe_chem_comp_substructure.comp_id 1S1
_pdbe_chem_comp_substructure.substructure_name MurckoScaffold
_pdbe_chem_comp_substructure.id S1
_pdbe_chem_comp_substructure.substructure_type scaffold
_pdbe_chem_comp_substructure.substructure_smiles c1ncnc(-n2cncn2)n1
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/C5H4N6/c1-6-2-9-5(8-1)11-4-7-3-10-11/h1-4H
_pdbe_chem_comp_substructure.substructure_inchikeys MFVHZVXBPUICEL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1S1 C3 S1 1
1S1 C4 S1 1
1S1 C7 S1 1
1S1 N10 S1 1
1S1 C12 S1 1
1S1 N5 S1 1
1S1 N6 S1 1
1S1 N2 S1 1
1S1 N8 S1 1
1S1 N11 S1 1
1S1 C9 S1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1S1
_pdbe_chem_comp_rdkit_properties.exactmw 287.161
_pdbe_chem_comp_rdkit_properties.amw 287.331
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 21
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 146.022
_pdbe_chem_comp_rdkit_properties.tpsa 117.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.037
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.530
_pdbe_chem_comp_rdkit_properties.chi0v 10.025
_pdbe_chem_comp_rdkit_properties.chi1v 5.028
_pdbe_chem_comp_rdkit_properties.chi2v 2.020
_pdbe_chem_comp_rdkit_properties.chi3v 2.020
_pdbe_chem_comp_rdkit_properties.chi4v 1.105
_pdbe_chem_comp_rdkit_properties.chi0n 27.025
_pdbe_chem_comp_rdkit_properties.chi1n 13.422
_pdbe_chem_comp_rdkit_properties.chi2n 2.020
_pdbe_chem_comp_rdkit_properties.chi3n 2.020
_pdbe_chem_comp_rdkit_properties.chi4n 1.105
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.760
_pdbe_chem_comp_rdkit_properties.kappa1 4.128
_pdbe_chem_comp_rdkit_properties.kappa2 6.128
_pdbe_chem_comp_rdkit_properties.kappa3 3.049
_pdbe_chem_comp_rdkit_properties.Phi 1.204
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1S1 UniChem ChEMBL CHEMBL2402509
1S1 UniChem PDBe 1S1
1S1 UniChem ZINC ZINC000095921183
1S1 UniChem PubChem 71598545
1S1 UniChem BindingDb 50437204
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1S1 C3 -0.521 -0.491 0.001 ETKDGv3 1
1S1 C4 -0.942 1.792 -0.504 ETKDGv3 2
1S1 C7 -2.527 0.131 -1.110 ETKDGv3 3
1S1 N10 -0.445 5.367 -0.705 ETKDGv3 4
1S1 C12 0.721 4.864 -0.040 ETKDGv3 5
1S1 N13 -3.781 -0.201 -1.714 ETKDGv3 6
1S1 C15 1.631 -1.367 1.135 ETKDGv3 7
1S1 C16 2.632 -0.886 0.046 ETKDGv3 8
1S1 C17 2.682 -1.779 -1.197 ETKDGv3 9
1S1 C18 2.127 -2.705 1.759 ETKDGv3 10
1S1 C19 1.290 -3.191 2.950 ETKDGv3 11
1S1 N21 1.541 0.468 3.026 ETKDGv3 12
1S1 C20 1.581 -0.338 2.197 ETKDGv3 13
1S1 N1 0.286 -1.547 0.552 ETKDGv3 14
1S1 N5 -1.782 -0.810 -0.607 ETKDGv3 15
1S1 C14 -4.647 0.819 -2.290 ETKDGv3 16
1S1 N6 -2.082 1.496 -1.055 ETKDGv3 17
1S1 N2 -0.127 0.748 0.049 ETKDGv3 18
1S1 N8 -0.498 3.148 -0.448 ETKDGv3 19
1S1 N11 0.702 3.579 0.115 ETKDGv3 20
1S1 C9 -1.150 4.308 -0.932 ETKDGv3 21
1S1 H1 1.536 5.488 0.300 ETKDGv3 22
1S1 H2 -4.086 -1.200 -1.744 ETKDGv3 23
1S1 H3 2.370 0.142 -0.286 ETKDGv3 24
1S1 H4 3.656 -0.825 0.477 ETKDGv3 25
1S1 H5 3.089 -2.781 -0.951 ETKDGv3 26
1S1 H6 3.353 -1.317 -1.952 ETKDGv3 27
1S1 H7 1.675 -1.887 -1.651 ETKDGv3 28
1S1 H8 2.110 -3.507 0.991 ETKDGv3 29
1S1 H9 3.181 -2.596 2.100 ETKDGv3 30
1S1 H10 0.221 -3.297 2.672 ETKDGv3 31
1S1 H11 1.663 -4.184 3.281 ETKDGv3 32
1S1 H12 1.378 -2.490 3.807 ETKDGv3 33
1S1 H13 -0.107 -2.512 0.476 ETKDGv3 34
1S1 H14 -4.940 1.550 -1.507 ETKDGv3 35
1S1 H15 -5.564 0.347 -2.702 ETKDGv3 36
1S1 H16 -4.115 1.346 -3.110 ETKDGv3 37
1S1 H17 -2.111 4.320 -1.429 ETKDGv3 38
#