data_1VT
#
_chem_comp.id 1VT
_chem_comp.name N-benzyl-2-[(N-benzyl-beta-alanyl)amino]-4-phenylthiophene-3-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H27 N3 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-06-24
_chem_comp.pdbx_modified_date 2014-12-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 469.598
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1VT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4LAP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1VT C01 C01 C 0 1 Y N N N N N -2.227 6.628 7.738 -2.036 1.237 0.221 C01 1VT 1
1VT C02 C02 C 0 1 N N N N N N -1.701 6.000 8.958 -2.377 0.079 1.051 C02 1VT 2
1VT O01 O01 O 0 1 N N N N N N -1.954 6.575 10.036 -2.419 0.191 2.263 O01 1VT 3
1VT N01 N01 N 0 1 N N N N N N -1.036 4.816 8.821 -2.644 -1.109 0.474 N01 1VT 4
1VT C1 C1 C 0 1 N N N N N N -0.489 4.075 9.967 -2.985 -2.266 1.304 C1 1VT 5
1VT C03 C03 C 0 1 Y N N N N N -1.460 2.938 10.324 -3.237 -3.461 0.421 C03 1VT 6
1VT C04 C04 C 0 1 Y N N N N N -2.705 3.233 10.894 -2.193 -4.303 0.083 C04 1VT 7
1VT C05 C05 C 0 1 Y N N N N N -3.605 2.212 11.236 -2.424 -5.399 -0.727 C05 1VT 8
1VT C06 C06 C 0 1 Y N N N N N -3.261 0.894 10.976 -3.698 -5.654 -1.199 C06 1VT 9
1VT C07 C07 C 0 1 Y N N N N N -2.028 0.579 10.401 -4.741 -4.812 -0.861 C07 1VT 10
1VT C08 C08 C 0 1 Y N N N N N -1.120 1.595 10.090 -4.512 -3.720 -0.046 C08 1VT 11
1VT C09 C09 C 0 1 Y N N N N N -3.211 6.069 7.033 -0.756 1.556 -0.145 C09 1VT 12
1VT N N N 0 1 N N N N N N -3.831 4.869 7.238 0.368 0.832 0.220 N 1VT 13
1VT C10 C10 C 0 1 N N N N N N -3.875 3.782 6.414 1.588 1.229 -0.192 C10 1VT 14
1VT O O O 0 1 N N N N N N -3.299 3.774 5.296 1.703 2.219 -0.882 O 1VT 15
1VT C11 C11 C 0 1 N N N N N N -4.648 2.579 6.752 2.811 0.442 0.205 C11 1VT 16
1VT C2 C2 C 0 1 N N N N N N -3.675 1.408 6.784 4.057 1.101 -0.389 C2 1VT 17
1VT N23 N23 N 0 1 N N N N N N -4.430 0.175 7.058 5.248 0.334 -0.002 N23 1VT 18
1VT C25 C25 C 0 1 N N N N N N -5.231 -0.142 5.859 6.467 0.938 -0.557 C25 1VT 19
1VT C12 C12 C 0 1 Y N N N N N -6.421 -1.058 6.064 7.666 0.126 -0.140 C12 1VT 20
1VT C13 C13 C 0 1 Y N N N N N -6.448 -2.103 6.990 8.102 -0.919 -0.932 C13 1VT 21
1VT C14 C14 C 0 1 Y N N N N N -7.609 -2.874 7.089 9.201 -1.665 -0.549 C14 1VT 22
1VT C15 C15 C 0 1 Y N N N N N -8.716 -2.622 6.271 9.865 -1.365 0.626 C15 1VT 23
1VT C16 C16 C 0 1 Y N N N N N -8.680 -1.566 5.352 9.428 -0.319 1.418 C16 1VT 24
1VT C17 C17 C 0 1 Y N N N N N -7.529 -0.789 5.253 8.332 0.429 1.033 C17 1VT 25
1VT S S S 0 1 Y N N N N N -3.706 7.066 5.638 -0.729 2.961 -1.108 S 1VT 26
1VT C18 C18 C 0 1 Y N N N N N -2.507 8.297 6.094 -2.472 3.146 -1.034 C18 1VT 27
1VT C19 C19 C 0 1 Y N N N N N -1.831 7.941 7.193 -3.021 2.166 -0.307 C19 1VT 28
1VT C20 C20 C 0 1 Y N N N N N -0.772 8.820 7.795 -4.478 2.046 -0.059 C20 1VT 29
1VT C21 C21 C 0 1 Y N N N N N -1.015 10.194 7.972 -5.202 3.145 0.401 C21 1VT 30
1VT C22 C22 C 0 1 Y N N N N N -0.025 10.994 8.536 -6.557 3.027 0.631 C22 1VT 31
1VT C23 C23 C 0 1 Y N N N N N 1.210 10.446 8.886 -7.198 1.822 0.405 C23 1VT 32
1VT C24 C24 C 0 1 Y N N N N N 1.445 9.080 8.706 -6.485 0.728 -0.051 C24 1VT 33
1VT C C C 0 1 Y N N N N N 0.458 8.263 8.151 -5.130 0.836 -0.290 C 1VT 34
1VT H1 H1 H 0 1 N N N N N N -0.916 4.437 7.903 -2.611 -1.197 -0.492 H1 1VT 35
1VT H2 H2 H 0 1 N N N N N N 0.493 3.655 9.702 -2.160 -2.483 1.982 H2 1VT 36
1VT H3 H3 H 0 1 N N N N N N -0.378 4.752 10.827 -3.882 -2.047 1.883 H3 1VT 37
1VT H4 H4 H 0 1 N N N N N N -2.977 4.263 11.073 -1.198 -4.103 0.451 H4 1VT 38
1VT H5 H5 H 0 1 N N N N N N -4.553 2.450 11.696 -1.608 -6.056 -0.992 H5 1VT 39
1VT H6 H6 H 0 1 N N N N N N -3.954 0.103 11.221 -3.878 -6.510 -1.832 H6 1VT 40
1VT H7 H7 H 0 1 N N N N N N -1.776 -0.451 10.196 -5.736 -5.011 -1.230 H7 1VT 41
1VT H8 H8 H 0 1 N N N N N N -0.156 1.348 9.670 -5.328 -3.065 0.221 H8 1VT 42
1VT H9 H9 H 0 1 N N N N N N -4.317 4.775 8.107 0.277 0.040 0.773 H9 1VT 43
1VT H10 H10 H 0 1 N N N N N N -5.122 2.701 7.737 2.893 0.422 1.292 H10 1VT 44
1VT H11 H11 H 0 1 N N N N N N -5.423 2.404 5.991 2.724 -0.578 -0.171 H11 1VT 45
1VT H12 H12 H 0 1 N N N N N N -3.167 1.323 5.812 3.974 1.120 -1.476 H12 1VT 46
1VT H13 H13 H 0 1 N N N N N N -2.928 1.569 7.576 4.143 2.120 -0.013 H13 1VT 47
1VT H14 H14 H 0 1 N N N N N N -5.034 0.314 7.843 5.164 -0.632 -0.284 H14 1VT 48
1VT H16 H16 H 0 1 N N N N N N -4.563 -0.620 5.128 6.401 0.957 -1.645 H16 1VT 49
1VT H17 H17 H 0 1 N N N N N N -5.606 0.807 5.447 6.570 1.957 -0.182 H17 1VT 50
1VT H18 H18 H 0 1 N N N N N N -5.592 -2.310 7.615 7.583 -1.154 -1.850 H18 1VT 51
1VT H19 H19 H 0 1 N N N N N N -7.653 -3.678 7.809 9.542 -2.482 -1.168 H19 1VT 52
1VT H20 H20 H 0 1 N N N N N N -9.597 -3.241 6.348 10.723 -1.947 0.925 H20 1VT 53
1VT H21 H21 H 0 1 N N N N N N -9.536 -1.357 4.727 9.946 -0.085 2.336 H21 1VT 54
1VT H22 H22 H 0 1 N N N N N N -7.491 0.026 4.546 7.991 1.246 1.652 H22 1VT 55
1VT H23 H23 H 0 1 N N N N N N -2.344 9.217 5.552 -3.026 3.940 -1.512 H23 1VT 56
1VT H24 H24 H 0 1 N N N N N N -1.960 10.624 7.674 -4.703 4.086 0.578 H24 1VT 57
1VT H25 H25 H 0 1 N N N N N N -0.214 12.044 8.704 -7.119 3.878 0.987 H25 1VT 58
1VT H26 H26 H 0 1 N N N N N N 1.984 11.078 9.296 -8.259 1.735 0.586 H26 1VT 59
1VT H27 H27 H 0 1 N N N N N N 2.394 8.655 8.997 -6.990 -0.210 -0.225 H27 1VT 60
1VT H28 H28 H 0 1 N N N N N N 0.644 7.210 7.998 -4.575 -0.018 -0.651 H28 1VT 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1VT C17 C16 DOUB Y N 1
1VT C17 C12 SING Y N 2
1VT O C10 DOUB N N 3
1VT C16 C15 SING Y N 4
1VT S C18 SING Y N 5
1VT S C09 SING Y N 6
1VT C25 C12 SING N N 7
1VT C25 N23 SING N N 8
1VT C12 C13 DOUB Y N 9
1VT C18 C19 DOUB Y N 10
1VT C15 C14 DOUB Y N 11
1VT C10 C11 SING N N 12
1VT C10 N SING N N 13
1VT C11 C2 SING N N 14
1VT C2 N23 SING N N 15
1VT C13 C14 SING Y N 16
1VT C09 N SING N N 17
1VT C09 C01 DOUB Y N 18
1VT C19 C01 SING Y N 19
1VT C19 C20 SING N N 20
1VT C01 C02 SING N N 21
1VT C20 C21 DOUB Y N 22
1VT C20 C SING Y N 23
1VT C21 C22 SING Y N 24
1VT C C24 DOUB Y N 25
1VT C22 C23 DOUB Y N 26
1VT C24 C23 SING Y N 27
1VT N01 C02 SING N N 28
1VT N01 C1 SING N N 29
1VT C02 O01 DOUB N N 30
1VT C1 C03 SING N N 31
1VT C08 C03 DOUB Y N 32
1VT C08 C07 SING Y N 33
1VT C03 C04 SING Y N 34
1VT C07 C06 DOUB Y N 35
1VT C04 C05 DOUB Y N 36
1VT C06 C05 SING Y N 37
1VT N01 H1 SING N N 38
1VT C1 H2 SING N N 39
1VT C1 H3 SING N N 40
1VT C04 H4 SING N N 41
1VT C05 H5 SING N N 42
1VT C06 H6 SING N N 43
1VT C07 H7 SING N N 44
1VT C08 H8 SING N N 45
1VT N H9 SING N N 46
1VT C11 H10 SING N N 47
1VT C11 H11 SING N N 48
1VT C2 H12 SING N N 49
1VT C2 H13 SING N N 50
1VT N23 H14 SING N N 51
1VT C25 H16 SING N N 52
1VT C25 H17 SING N N 53
1VT C13 H18 SING N N 54
1VT C14 H19 SING N N 55
1VT C15 H20 SING N N 56
1VT C16 H21 SING N N 57
1VT C17 H22 SING N N 58
1VT C18 H23 SING N N 59
1VT C21 H24 SING N N 60
1VT C22 H25 SING N N 61
1VT C23 H26 SING N N 62
1VT C24 H27 SING N N 63
1VT C H28 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1VT SMILES ACDLabs 12.01 O=C(Nc2scc(c1ccccc1)c2C(=O)NCc3ccccc3)CCNCc4ccccc4
1VT InChI InChI 1.03 InChI=1S/C28H27N3O2S/c32-25(16-17-29-18-21-10-4-1-5-11-21)31-28-26(24(20-34-28)23-14-8-3-9-15-23)27(33)30-19-22-12-6-2-7-13-22/h1-15,20,29H,16-19H2,(H,30,33)(H,31,32)
1VT InChIKey InChI 1.03 WYXRECOQBJBCCU-UHFFFAOYSA-N
1VT SMILES_CANONICAL CACTVS 3.385 O=C(CCNCc1ccccc1)Nc2scc(c3ccccc3)c2C(=O)NCc4ccccc4
1VT SMILES CACTVS 3.385 O=C(CCNCc1ccccc1)Nc2scc(c3ccccc3)c2C(=O)NCc4ccccc4
1VT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)CNCCC(=O)Nc2c(c(cs2)c3ccccc3)C(=O)NCc4ccccc4
1VT SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)CNCCC(=O)Nc2c(c(cs2)c3ccccc3)C(=O)NCc4ccccc4
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1VT "SYSTEMATIC NAME" ACDLabs 12.01 N-benzyl-2-[(N-benzyl-beta-alanyl)amino]-4-phenylthiophene-3-carboxamide
1VT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4-phenyl-N-(phenylmethyl)-2-[3-[(phenylmethyl)amino]propanoylamino]thiophene-3-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1VT 'Create component' 2013-06-24 RCSB
1VT 'Initial release' 2014-12-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1VT C01 C 10.624 -3.797 1
1VT C02 C 9.197 -4.261 2
1VT O01 O 8.885 -5.728 3
1VT N01 N 8.083 -3.257 4
1VT C1 C 6.656 -3.720 5
1VT C03 C 5.541 -2.716 6
1VT C04 C 5.853 -1.249 7
1VT C05 C 4.739 -0.246 8
1VT C06 C 3.312 -0.709 9
1VT C07 C 3.000 -2.176 10
1VT C08 C 4.115 -3.180 11
1VT C09 C 11.087 -2.370 12
1VT N N 10.206 -1.157 13
1VT C10 C 10.816 0.214 14
1VT O O 12.308 0.370 15
1VT C11 C 9.934 1.427 16
1VT C2 C 10.544 2.797 17
1VT N23 N 9.662 4.011 18
1VT C25 C 10.273 5.381 19
1VT C12 C 9.391 6.595 20
1VT C13 C 7.899 6.438 21
1VT C14 C 7.018 7.652 22
1VT C15 C 7.628 9.022 23
1VT C16 C 9.119 9.178 24
1VT C17 C 10.001 7.965 25
1VT S S 12.587 -2.370 26
1VT C18 C 13.051 -3.797 27
1VT C19 C 11.837 -4.678 28
1VT C20 C 11.837 -6.178 29
1VT C21 C 13.136 -6.928 30
1VT C22 C 13.136 -8.428 31
1VT C23 C 11.837 -9.178 32
1VT C24 C 10.538 -8.428 33
1VT C C 10.538 -6.928 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1VT C17 C16 DOUBLE NONE 1
1VT C17 C12 SINGLE NONE 2
1VT O C10 DOUBLE NONE 3
1VT C16 C15 SINGLE NONE 4
1VT S C18 SINGLE NONE 5
1VT S C09 SINGLE NONE 6
1VT C25 C12 SINGLE NONE 7
1VT C25 N23 SINGLE NONE 8
1VT C12 C13 DOUBLE NONE 9
1VT C18 C19 DOUBLE NONE 10
1VT C15 C14 DOUBLE NONE 11
1VT C10 C11 SINGLE NONE 12
1VT C10 N SINGLE NONE 13
1VT C11 C2 SINGLE NONE 14
1VT C2 N23 SINGLE NONE 15
1VT C13 C14 SINGLE NONE 16
1VT C09 N SINGLE NONE 17
1VT C09 C01 DOUBLE NONE 18
1VT C19 C01 SINGLE NONE 19
1VT C19 C20 SINGLE NONE 20
1VT C01 C02 SINGLE NONE 21
1VT C20 C21 DOUBLE NONE 22
1VT C20 C SINGLE NONE 23
1VT C21 C22 SINGLE NONE 24
1VT C C24 DOUBLE NONE 25
1VT C22 C23 DOUBLE NONE 26
1VT C24 C23 SINGLE NONE 27
1VT N01 C02 SINGLE NONE 28
1VT N01 C1 SINGLE NONE 29
1VT C02 O01 DOUBLE NONE 30
1VT C1 C03 SINGLE NONE 31
1VT C08 C03 SINGLE NONE 32
1VT C08 C07 DOUBLE NONE 33
1VT C03 C04 DOUBLE NONE 34
1VT C07 C06 SINGLE NONE 35
1VT C04 C05 SINGLE NONE 36
1VT C06 C05 DOUBLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1VT MurckoScaffold S1 scaffold O=C(CCNCc1ccccc1)Nc1scc(-c2ccccc2)c1C(=O)NCc1ccccc1 InChI=1S/C28H27N3O2S/c32-25(16-17-29-18-21-10-4-1-5-11-21)31-28-26(24(20-34-28)23-14-8-3-9-15-23)27(33)30-19-22-12-6-2-7-13-22/h1-15,20,29H,16-19H2,(H,30,33)(H,31,32) WYXRECOQBJBCCU-UHFFFAOYSA-N
1VT amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
1VT phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
1VT thiophen F3 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1VT C01 S1 1
1VT C02 S1 1
1VT O01 S1 1
1VT N01 S1 1
1VT C1 S1 1
1VT C03 S1 1
1VT C04 S1 1
1VT C05 S1 1
1VT C06 S1 1
1VT C07 S1 1
1VT C08 S1 1
1VT C09 S1 1
1VT N S1 1
1VT C10 S1 1
1VT O S1 1
1VT C11 S1 1
1VT C2 S1 1
1VT N23 S1 1
1VT C25 S1 1
1VT C12 S1 1
1VT C13 S1 1
1VT C14 S1 1
1VT C15 S1 1
1VT C16 S1 1
1VT C17 S1 1
1VT S S1 1
1VT C18 S1 1
1VT C19 S1 1
1VT C20 S1 1
1VT C21 S1 1
1VT C22 S1 1
1VT C23 S1 1
1VT C24 S1 1
1VT C S1 1
1VT N01 F1 1
1VT C02 F1 1
1VT O01 F1 1
1VT C01 F1 1
1VT N F1 2
1VT C10 F1 2
1VT O F1 2
1VT C11 F1 2
1VT C03 F2 1
1VT C08 F2 1
1VT C07 F2 1
1VT C06 F2 1
1VT C05 F2 1
1VT C04 F2 1
1VT C12 F2 2
1VT C17 F2 2
1VT C16 F2 2
1VT C15 F2 2
1VT C14 F2 2
1VT C13 F2 2
1VT C20 F2 3
1VT C21 F2 3
1VT C22 F2 3
1VT C23 F2 3
1VT C24 F2 3
1VT C F2 3
1VT C09 F3 1
1VT C01 F3 1
1VT C19 F3 1
1VT C18 F3 1
1VT S F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 1VT
_pdbe_chem_comp_rdkit_properties.exactmw 469.182
_pdbe_chem_comp_rdkit_properties.amw 469.610
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 241.514
_pdbe_chem_comp_rdkit_properties.tpsa 70.230
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.539
_pdbe_chem_comp_rdkit_properties.CrippenMR 135.819
_pdbe_chem_comp_rdkit_properties.chi0v 17.383
_pdbe_chem_comp_rdkit_properties.chi1v 9.725
_pdbe_chem_comp_rdkit_properties.chi2v 4.331
_pdbe_chem_comp_rdkit_properties.chi3v 4.331
_pdbe_chem_comp_rdkit_properties.chi4v 3.014
_pdbe_chem_comp_rdkit_properties.chi0n 43.566
_pdbe_chem_comp_rdkit_properties.chi1n 22.250
_pdbe_chem_comp_rdkit_properties.chi2n 3.536
_pdbe_chem_comp_rdkit_properties.chi3n 3.536
_pdbe_chem_comp_rdkit_properties.chi4n 2.191
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.740
_pdbe_chem_comp_rdkit_properties.kappa1 7.134
_pdbe_chem_comp_rdkit_properties.kappa2 11.929
_pdbe_chem_comp_rdkit_properties.kappa3 6.405
_pdbe_chem_comp_rdkit_properties.Phi 2.503
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1VT UniChem PDBe 1VT
1VT UniChem ZINC ZINC000263621206
1VT UniChem PubChem 133053944
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1VT C01 -0.865 -2.723 0.274 ETKDGv3 1
1VT C02 -1.725 -1.798 1.035 ETKDGv3 2
1VT O01 -1.540 -1.654 2.274 ETKDGv3 3
1VT N01 -2.748 -1.049 0.365 ETKDGv3 4
1VT C1 -3.444 0.061 1.010 ETKDGv3 5
1VT C03 -2.494 1.211 1.214 ETKDGv3 6
1VT C04 -2.030 1.519 2.439 ETKDGv3 7
1VT C05 -1.056 2.618 2.611 ETKDGv3 8
1VT C06 -0.627 3.307 1.547 ETKDGv3 9
1VT C07 -1.125 2.969 0.198 ETKDGv3 10
1VT C08 -2.008 1.975 0.038 ETKDGv3 11
1VT C09 0.475 -2.659 0.304 ETKDGv3 12
1VT N 1.231 -1.660 1.013 ETKDGv3 13
1VT C10 2.661 -1.672 1.130 ETKDGv3 14
1VT O 3.325 -2.701 0.831 ETKDGv3 15
1VT C11 3.384 -0.442 1.596 ETKDGv3 16
1VT C2 3.575 0.550 0.447 ETKDGv3 17
1VT N23 2.279 1.104 0.028 ETKDGv3 18
1VT C25 2.359 1.770 -1.281 ETKDGv3 19
1VT C12 3.215 3.013 -1.236 ETKDGv3 20
1VT C13 4.488 2.990 -1.672 ETKDGv3 21
1VT C14 5.325 4.206 -1.592 ETKDGv3 22
1VT C15 4.821 5.335 -1.079 ETKDGv3 23
1VT C16 3.427 5.367 -0.592 ETKDGv3 24
1VT C17 2.665 4.268 -0.666 ETKDGv3 25
1VT S 1.154 -3.821 -0.863 ETKDGv3 26
1VT C18 -0.449 -4.393 -1.364 ETKDGv3 27
1VT C19 -1.397 -3.745 -0.682 ETKDGv3 28
1VT C20 -2.834 -4.061 -0.854 ETKDGv3 29
1VT C21 -3.647 -4.192 0.212 ETKDGv3 30
1VT C22 -5.078 -4.508 0.026 ETKDGv3 31
1VT C23 -5.574 -4.677 -1.205 ETKDGv3 32
1VT C24 -4.690 -4.548 -2.381 ETKDGv3 33
1VT C -3.393 -4.260 -2.217 ETKDGv3 34
1VT H1 -2.930 -1.224 -0.649 ETKDGv3 35
1VT H2 -4.279 0.399 0.359 ETKDGv3 36
1VT H3 -3.892 -0.282 1.968 ETKDGv3 37
1VT H4 -2.353 0.964 3.311 ETKDGv3 38
1VT H5 -0.690 2.861 3.599 ETKDGv3 39
1VT H6 0.086 4.111 1.674 ETKDGv3 40
1VT H7 -0.773 3.524 -0.661 ETKDGv3 41
1VT H8 -2.364 1.728 -0.954 ETKDGv3 42
1VT H9 0.727 -0.841 1.420 ETKDGv3 43
1VT H10 4.381 -0.729 1.996 ETKDGv3 44
1VT H11 2.819 0.038 2.424 ETKDGv3 45
1VT H12 4.243 1.370 0.794 ETKDGv3 46
1VT H13 4.077 0.028 -0.399 ETKDGv3 47
1VT H14 1.956 1.795 0.746 ETKDGv3 48
1VT H16 2.726 1.056 -2.052 ETKDGv3 49
1VT H17 1.332 2.056 -1.594 ETKDGv3 50
1VT H18 4.918 2.083 -2.078 ETKDGv3 51
1VT H19 6.347 4.180 -1.948 ETKDGv3 52
1VT H20 5.433 6.226 -1.019 ETKDGv3 53
1VT H21 3.023 6.281 -0.177 ETKDGv3 54
1VT H22 1.645 4.300 -0.308 ETKDGv3 55
1VT H23 -0.628 -5.179 -2.087 ETKDGv3 56
1VT H24 -3.265 -4.086 1.219 ETKDGv3 57
1VT H25 -5.724 -4.605 0.889 ETKDGv3 58
1VT H26 -6.622 -4.909 -1.342 ETKDGv3 59
1VT H27 -5.095 -4.685 -3.375 ETKDGv3 60
1VT H28 -2.757 -4.158 -3.087 ETKDGv3 61
#