data_1YU
#
_chem_comp.id 1YU
_chem_comp.name
"(1S,3S,4S,5R)-3-{4-amino-3-fluoro-5-[(1,1,1,3,3,3-hexafluoropropan-2-yl)oxy]benzyl}-5-[(3-tert-butylbenzyl)amino]tetrahydro-2H-thiopyran-4-ol 1-oxide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H31 F7 N2 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-08-08
_chem_comp.pdbx_modified_date 2013-08-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 584.590
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1YU
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4LXM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1YU F1 F1 F 0 1 N N N N N N 27.838 8.243 20.011 -6.236 2.492 1.157 F1 1YU 1
1YU C2 C2 C 0 1 N N N N N N 28.564 9.237 19.440 -4.863 2.341 0.941 C2 1YU 2
1YU F3 F3 F 0 1 N N N N N N 27.996 9.511 18.240 -4.266 3.602 0.830 F3 1YU 3
1YU F4 F4 F 0 1 N N N N N N 28.508 10.358 20.210 -4.294 1.649 2.015 F4 1YU 4
1YU C5 C5 C 0 1 N N N N N N 30.032 8.778 19.222 -4.634 1.554 -0.352 C5 1YU 5
1YU O7 O7 O 0 1 N N N N N N 30.774 9.773 18.483 -5.243 0.266 -0.239 O7 1YU 6
1YU C8 C8 C 0 1 Y N N N N N 31.100 9.550 17.146 -4.465 -0.746 0.230 C8 1YU 7
1YU C9 C9 C 0 1 Y N N N N N 30.781 10.554 16.197 -4.955 -2.049 0.253 C9 1YU 8
1YU C10 C10 C 0 1 Y N N N N N 31.100 10.350 14.828 -4.155 -3.079 0.734 C10 1YU 9
1YU C11 C11 C 0 1 Y N N N N N 31.724 9.148 14.407 -2.877 -2.806 1.188 C11 1YU 10
1YU C13 C13 C 0 1 Y N N N N N 32.031 8.142 15.362 -2.393 -1.511 1.165 C13 1YU 11
1YU C14 C14 C 0 1 Y N N N N N 31.726 8.350 16.725 -3.182 -0.483 0.682 C14 1YU 12
1YU C16 C16 C 0 1 N N N N N N 32.676 6.805 14.955 -1.001 -1.220 1.662 C16 1YU 13
1YU C19 C19 C 0 1 N N S N N N 31.658 5.854 14.222 -0.010 -1.339 0.502 C19 1YU 14
1YU C21 C21 C 0 1 N N S N N N 32.197 4.415 13.924 1.377 -0.913 0.974 C21 1YU 15
1YU C23 C23 C 0 1 N N R N N N 31.176 3.525 13.137 2.328 -0.762 -0.209 C23 1YU 16
1YU C25 C25 C 0 1 N N N N N N 29.770 3.396 13.797 2.662 -2.139 -0.789 C25 1YU 17
1YU S28 S28 S 0 1 N N S N N N 29.047 5.030 13.959 1.136 -2.896 -1.423 S28 1YU 18
1YU C29 C29 C 0 1 N N N N N N 30.298 5.771 14.994 0.028 -2.790 0.013 C29 1YU 19
1YU O32 O32 O 0 1 N N N N N N 27.822 4.877 14.807 1.378 -4.261 -1.735 O32 1YU 20
1YU N33 N33 N 0 1 N N N N N N 31.725 2.194 12.755 3.564 -0.108 0.239 N33 1YU 21
1YU C35 C35 C 0 1 N N N N N N 31.088 1.361 11.683 4.224 0.589 -0.874 C35 1YU 22
1YU C38 C38 C 0 1 Y N N N N N 30.932 2.200 10.396 5.486 1.246 -0.377 C38 1YU 23
1YU C39 C39 C 0 1 Y N N N N N 32.088 2.594 9.683 6.682 0.555 -0.405 C39 1YU 24
1YU C41 C41 C 0 1 Y N N N N N 32.034 3.377 8.498 7.840 1.158 0.051 C41 1YU 25
1YU C42 C42 C 0 1 Y N N N N N 30.734 3.750 8.053 7.800 2.452 0.535 C42 1YU 26
1YU C44 C44 C 0 1 Y N N N N N 29.558 3.367 8.744 6.604 3.144 0.562 C44 1YU 27
1YU C46 C46 C 0 1 Y N N N N N 29.654 2.589 9.920 5.447 2.543 0.101 C46 1YU 28
1YU C48 C48 C 0 1 N N N N N N 33.354 3.789 7.758 9.144 0.404 0.021 C48 1YU 29
1YU C49 C49 C 0 1 N N N N N N 34.278 2.550 7.579 10.259 1.292 0.577 C49 1YU 30
1YU C53 C53 C 0 1 N N N N N N 33.136 4.407 6.336 9.023 -0.859 0.877 C53 1YU 31
1YU C57 C57 C 0 1 N N N N N N 34.131 4.860 8.591 9.474 0.013 -1.420 C57 1YU 32
1YU O61 O61 O 0 1 N N N N N N 33.394 4.439 13.123 1.276 0.338 1.658 O61 1YU 33
1YU F63 F63 F 0 1 N N N N N N 30.806 11.291 13.935 -4.626 -4.345 0.758 F63 1YU 34
1YU N64 N64 N 0 1 N N N N N N 30.173 11.695 16.597 -6.250 -2.321 -0.207 N64 1YU 35
1YU C67 C67 C 0 1 N N N N N N 30.853 8.505 20.507 -5.255 2.311 -1.527 C67 1YU 36
1YU F68 F68 F 0 1 N N N N N N 30.187 7.659 21.334 -6.629 2.463 -1.310 F68 1YU 37
1YU F69 F69 F 0 1 N N N N N N 31.119 9.665 21.150 -4.659 3.572 -1.637 F69 1YU 38
1YU F70 F70 F 0 1 N N N N N N 32.039 7.926 20.183 -5.046 1.592 -2.708 F70 1YU 39
1YU H1 H1 H 0 1 N N N N N N 30.006 7.846 18.639 -3.563 1.436 -0.520 H1 1YU 40
1YU H2 H2 H 0 1 N N N N N N 31.965 8.998 13.365 -2.256 -3.607 1.562 H2 1YU 41
1YU H3 H3 H 0 1 N N N N N N 31.971 7.590 17.452 -2.800 0.527 0.665 H3 1YU 42
1YU H4 H4 H 0 1 N N N N N N 33.045 6.300 15.860 -0.964 -0.210 2.069 H4 1YU 43
1YU H5 H5 H 0 1 N N N N N N 33.520 7.010 14.279 -0.736 -1.936 2.441 H5 1YU 44
1YU H6 H6 H 0 1 N N N N N N 31.440 6.318 13.248 -0.329 -0.691 -0.314 H6 1YU 45
1YU H7 H7 H 0 1 N N N N N N 32.406 3.924 14.886 1.770 -1.665 1.658 H7 1YU 46
1YU H8 H8 H 0 1 N N N N N N 31.001 4.060 12.192 1.855 -0.152 -0.978 H8 1YU 47
1YU H9 H9 H 0 1 N N N N N N 29.123 2.768 13.167 3.381 -2.029 -1.601 H9 1YU 48
1YU H10 H10 H 0 1 N N N N N N 29.870 2.937 14.792 3.086 -2.771 -0.008 H10 1YU 49
1YU H11 H11 H 0 1 N N N N N N 29.980 6.784 15.280 0.400 -3.434 0.810 H11 1YU 50
1YU H12 H12 H 0 1 N N N N N N 30.430 5.159 15.899 -0.975 -3.104 -0.276 H12 1YU 51
1YU H14 H14 H 0 1 N N N N N N 31.719 1.637 13.586 4.189 -0.773 0.670 H14 1YU 52
1YU H16 H16 H 0 1 N N N N N N 30.097 1.024 12.022 4.471 -0.128 -1.656 H16 1YU 53
1YU H17 H17 H 0 1 N N N N N N 31.722 0.486 11.475 3.553 1.348 -1.276 H17 1YU 54
1YU H18 H18 H 0 1 N N N N N N 33.054 2.286 10.055 6.713 -0.456 -0.783 H18 1YU 55
1YU H19 H19 H 0 1 N N N N N N 30.641 4.346 7.157 8.705 2.923 0.892 H19 1YU 56
1YU H20 H20 H 0 1 N N N N N N 28.590 3.669 8.373 6.573 4.155 0.940 H20 1YU 57
1YU H21 H21 H 0 1 N N N N N N 28.762 2.293 10.452 4.513 3.083 0.123 H21 1YU 58
1YU H22 H22 H 0 1 N N N N N N 34.459 2.082 8.558 10.024 1.570 1.605 H22 1YU 59
1YU H23 H23 H 0 1 N N N N N N 33.792 1.824 6.910 11.203 0.746 0.556 H23 1YU 60
1YU H24 H24 H 0 1 N N N N N N 35.236 2.867 7.142 10.346 2.191 -0.032 H24 1YU 61
1YU H25 H25 H 0 1 N N N N N N 32.485 5.290 6.415 8.229 -1.491 0.481 H25 1YU 62
1YU H26 H26 H 0 1 N N N N N N 34.107 4.704 5.913 9.967 -1.404 0.856 H26 1YU 63
1YU H27 H27 H 0 1 N N N N N N 32.663 3.661 5.681 8.788 -0.580 1.904 H27 1YU 64
1YU H28 H28 H 0 1 N N N N N N 34.312 4.476 9.606 9.561 0.912 -2.030 H28 1YU 65
1YU H29 H29 H 0 1 N N N N N N 35.093 5.076 8.104 10.418 -0.533 -1.442 H29 1YU 66
1YU H30 H30 H 0 1 N N N N N N 33.534 5.782 8.650 8.680 -0.620 -1.816 H30 1YU 67
1YU H31 H31 H 0 1 N N N N N N 34.054 4.969 13.555 2.121 0.675 1.988 H31 1YU 68
1YU H32 H32 H 0 1 N N N N N N 30.026 11.666 17.586 -6.807 -1.601 -0.543 H32 1YU 69
1YU H33 H33 H 0 1 N N N N N N 30.751 12.478 16.368 -6.590 -3.230 -0.191 H33 1YU 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1YU C53 C48 SING N N 1
1YU C49 C48 SING N N 2
1YU C48 C41 SING N N 3
1YU C48 C57 SING N N 4
1YU C42 C41 DOUB Y N 5
1YU C42 C44 SING Y N 6
1YU C41 C39 SING Y N 7
1YU C44 C46 DOUB Y N 8
1YU C39 C38 DOUB Y N 9
1YU C46 C38 SING Y N 10
1YU C38 C35 SING N N 11
1YU C35 N33 SING N N 12
1YU N33 C23 SING N N 13
1YU O61 C21 SING N N 14
1YU C23 C25 SING N N 15
1YU C23 C21 SING N N 16
1YU C25 S28 SING N N 17
1YU C21 C19 SING N N 18
1YU F63 C10 SING N N 19
1YU S28 O32 DOUB N N 20
1YU S28 C29 SING N N 21
1YU C19 C16 SING N N 22
1YU C19 C29 SING N N 23
1YU C11 C10 DOUB Y N 24
1YU C11 C13 SING Y N 25
1YU C10 C9 SING Y N 26
1YU C16 C13 SING N N 27
1YU C13 C14 DOUB Y N 28
1YU C9 N64 SING N N 29
1YU C9 C8 DOUB Y N 30
1YU C14 C8 SING Y N 31
1YU C8 O7 SING N N 32
1YU F3 C2 SING N N 33
1YU O7 C5 SING N N 34
1YU C5 C2 SING N N 35
1YU C5 C67 SING N N 36
1YU C2 F1 SING N N 37
1YU C2 F4 SING N N 38
1YU F70 C67 SING N N 39
1YU C67 F69 SING N N 40
1YU C67 F68 SING N N 41
1YU C5 H1 SING N N 42
1YU C11 H2 SING N N 43
1YU C14 H3 SING N N 44
1YU C16 H4 SING N N 45
1YU C16 H5 SING N N 46
1YU C19 H6 SING N N 47
1YU C21 H7 SING N N 48
1YU C23 H8 SING N N 49
1YU C25 H9 SING N N 50
1YU C25 H10 SING N N 51
1YU C29 H11 SING N N 52
1YU C29 H12 SING N N 53
1YU N33 H14 SING N N 54
1YU C35 H16 SING N N 55
1YU C35 H17 SING N N 56
1YU C39 H18 SING N N 57
1YU C42 H19 SING N N 58
1YU C44 H20 SING N N 59
1YU C46 H21 SING N N 60
1YU C49 H22 SING N N 61
1YU C49 H23 SING N N 62
1YU C49 H24 SING N N 63
1YU C53 H25 SING N N 64
1YU C53 H26 SING N N 65
1YU C53 H27 SING N N 66
1YU C57 H28 SING N N 67
1YU C57 H29 SING N N 68
1YU C57 H30 SING N N 69
1YU O61 H31 SING N N 70
1YU N64 H32 SING N N 71
1YU N64 H33 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1YU SMILES ACDLabs 12.01 O=S2CC(C(O)C(NCc1cccc(c1)C(C)(C)C)C2)Cc3cc(F)c(N)c(OC(C(F)(F)F)C(F)(F)F)c3
1YU InChI InChI 1.03 InChI=1S/C26H31F7N2O3S/c1-24(2,3)17-6-4-5-14(8-17)11-35-19-13-39(37)12-16(22(19)36)7-15-9-18(27)21(34)20(10-15)38-23(25(28,29)30)26(31,32)33/h4-6,8-10,16,19,22-23,35-36H,7,11-13,34H2,1-3H3/t16-,19+,22+,39+/m1/s1
1YU InChIKey InChI 1.03 SVZBUJIOBQPGEC-DAMLKHMOSA-N
1YU SMILES_CANONICAL CACTVS 3.385 CC(C)(C)c1cccc(CN[C@H]2C[S@@](=O)C[C@@H](Cc3cc(F)c(N)c(OC(C(F)(F)F)C(F)(F)F)c3)[C@@H]2O)c1
1YU SMILES CACTVS 3.385 CC(C)(C)c1cccc(CN[CH]2C[S](=O)C[CH](Cc3cc(F)c(N)c(OC(C(F)(F)F)C(F)(F)F)c3)[CH]2O)c1
1YU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)(C)c1cccc(c1)CN[C@H]2C[S@@](=O)C[C@H]([C@@H]2O)Cc3cc(c(c(c3)F)N)OC(C(F)(F)F)C(F)(F)F
1YU SMILES "OpenEye OEToolkits" 1.7.6 CC(C)(C)c1cccc(c1)CNC2CS(=O)CC(C2O)Cc3cc(c(c(c3)F)N)OC(C(F)(F)F)C(F)(F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1YU "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,3S,4S,5R)-3-{4-amino-3-fluoro-5-[(1,1,1,3,3,3-hexafluoropropan-2-yl)oxy]benzyl}-5-[(3-tert-butylbenzyl)amino]tetrahydro-2H-thiopyran-4-ol 1-oxide"
1YU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (1S,3S,4S,5R)-3-[[4-azanyl-3-fluoranyl-5-[1,1,1,3,3,3-hexakis(fluoranyl)propan-2-yloxy]phenyl]methyl]-5-[(3-tert-butylphenyl)methylamino]-1-oxidanylidene-thian-4-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1YU 'Create component' 2013-08-08 RCSB
1YU 'Initial release' 2013-08-28 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
1YU F1 F 9.203 7.125 1
1YU C2 C 7.702 7.125 2
1YU F3 F 7.702 8.625 3
1YU F4 F 6.202 7.125 4
1YU C5 C 7.702 5.625 5
1YU O7 O 6.404 4.875 6
1YU C8 C 6.404 3.375 7
1YU C9 C 5.104 2.625 8
1YU C10 C 5.104 1.125 9
1YU C11 C 6.404 0.375 10
1YU C13 C 7.702 1.125 11
1YU C14 C 7.702 2.625 12
1YU C16 C 9.002 0.375 13
1YU C19 C 9.002 -1.125 14
1YU C21 C 10.301 -1.875 15
1YU C23 C 10.301 -3.375 16
1YU C25 C 9.002 -4.125 17
1YU S28 S 7.702 -3.375 18
1YU C29 C 7.702 -1.875 19
1YU O32 O 6.404 -4.125 20
1YU N33 N 11.600 -4.125 21
1YU C35 C 11.600 -5.625 22
1YU C38 C 12.899 -6.375 23
1YU C39 C 14.198 -5.625 24
1YU C41 C 15.497 -6.375 25
1YU C42 C 15.497 -7.875 26
1YU C44 C 14.198 -8.625 27
1YU C46 C 12.899 -7.875 28
1YU C48 C 16.796 -5.625 29
1YU C49 C 17.546 -6.924 30
1YU C53 C 18.095 -4.875 31
1YU C57 C 16.046 -4.326 32
1YU O61 O 11.600 -1.125 33
1YU F63 F 3.805 0.375 34
1YU N64 N 3.805 3.375 35
1YU C67 C 9.002 4.875 36
1YU F68 F 8.252 3.576 37
1YU F69 F 9.752 6.174 38
1YU F70 F 10.301 4.125 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
1YU C53 C48 SINGLE NONE 1
1YU C49 C48 SINGLE NONE 2
1YU C48 C41 SINGLE NONE 3
1YU C48 C57 SINGLE NONE 4
1YU C42 C41 SINGLE NONE 5
1YU C42 C44 DOUBLE NONE 6
1YU C41 C39 DOUBLE NONE 7
1YU C44 C46 SINGLE NONE 8
1YU C39 C38 SINGLE NONE 9
1YU C46 C38 DOUBLE NONE 10
1YU C38 C35 SINGLE NONE 11
1YU C35 N33 SINGLE NONE 12
1YU C23 N33 SINGLE BEGINWEDGE 13
1YU C21 O61 SINGLE BEGINDASH 14
1YU C23 C25 SINGLE NONE 15
1YU C23 C21 SINGLE NONE 16
1YU S28 C25 SINGLE BEGINWEDGE 17
1YU C21 C19 SINGLE NONE 18
1YU F63 C10 SINGLE NONE 19
1YU S28 O32 DOUBLE NONE 20
1YU S28 C29 SINGLE NONE 21
1YU C19 C16 SINGLE BEGINWEDGE 22
1YU C19 C29 SINGLE NONE 23
1YU C11 C10 DOUBLE NONE 24
1YU C11 C13 SINGLE NONE 25
1YU C10 C9 SINGLE NONE 26
1YU C16 C13 SINGLE NONE 27
1YU C13 C14 DOUBLE NONE 28
1YU C9 N64 SINGLE NONE 29
1YU C9 C8 DOUBLE NONE 30
1YU C14 C8 SINGLE NONE 31
1YU C8 O7 SINGLE NONE 32
1YU F3 C2 SINGLE NONE 33
1YU O7 C5 SINGLE NONE 34
1YU C5 C2 SINGLE NONE 35
1YU C5 C67 SINGLE NONE 36
1YU C2 F1 SINGLE NONE 37
1YU C2 F4 SINGLE NONE 38
1YU F70 C67 SINGLE NONE 39
1YU C67 F69 SINGLE NONE 40
1YU C67 F68 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
1YU MurckoScaffold S1 scaffold 'O=[S@]1C[C@@H](Cc2ccccc2)C[C@@H](NCc2ccccc2)C1' InChI=1S/C19H23NOS/c21-22-14-18(11-16-7-3-1-4-8-16)12-19(15-22)20-13-17-9-5-2-6-10-17/h1-10,18-20H,11-15H2/t18-,19+,22-/m0/s1 WBBXJRCQZBDDQG-JQVVWYNYSA-N
1YU phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
1YU C8 S1 1
1YU C9 S1 1
1YU C10 S1 1
1YU C11 S1 1
1YU C13 S1 1
1YU C14 S1 1
1YU C16 S1 1
1YU C19 S1 1
1YU C21 S1 1
1YU C23 S1 1
1YU C25 S1 1
1YU S28 S1 1
1YU C29 S1 1
1YU O32 S1 1
1YU N33 S1 1
1YU C35 S1 1
1YU C38 S1 1
1YU C39 S1 1
1YU C41 S1 1
1YU C42 S1 1
1YU C44 S1 1
1YU C46 S1 1
1YU C8 F1 1
1YU C9 F1 1
1YU C10 F1 1
1YU C11 F1 1
1YU C13 F1 1
1YU C14 F1 1
1YU C38 F1 2
1YU C39 F1 2
1YU C41 F1 2
1YU C42 F1 2
1YU C44 F1 2
1YU C46 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 1YU
_pdbe_chem_comp_rdkit_properties.exactmw 584.194
_pdbe_chem_comp_rdkit_properties.amw 584.598
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.538
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 267.737
_pdbe_chem_comp_rdkit_properties.tpsa 84.580
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.011
_pdbe_chem_comp_rdkit_properties.CrippenMR 131.953
_pdbe_chem_comp_rdkit_properties.chi0v 18.990
_pdbe_chem_comp_rdkit_properties.chi1v 10.581
_pdbe_chem_comp_rdkit_properties.chi2v 4.739
_pdbe_chem_comp_rdkit_properties.chi3v 4.739
_pdbe_chem_comp_rdkit_properties.chi4v 3.079
_pdbe_chem_comp_rdkit_properties.chi0n 49.173
_pdbe_chem_comp_rdkit_properties.chi1n 24.681
_pdbe_chem_comp_rdkit_properties.chi2n 3.971
_pdbe_chem_comp_rdkit_properties.chi3n 3.971
_pdbe_chem_comp_rdkit_properties.chi4n 2.384
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.380
_pdbe_chem_comp_rdkit_properties.kappa1 9.586
_pdbe_chem_comp_rdkit_properties.kappa2 11.618
_pdbe_chem_comp_rdkit_properties.kappa3 8.073
_pdbe_chem_comp_rdkit_properties.Phi 2.856
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
1YU UniChem ChEMBL CHEMBL2425609
1YU UniChem PDBe 1YU
1YU UniChem ZINC ZINC000059049521
1YU UniChem PubChem 71664592
1YU UniChem BindingDb 50440424
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
1YU F1 5.824 3.714 2.289 ETKDGv3 1
1YU C2 5.889 2.857 1.205 ETKDGv3 2
1YU F3 6.419 3.537 0.123 ETKDGv3 3
1YU F4 4.601 2.468 0.887 ETKDGv3 4
1YU C5 6.752 1.624 1.543 ETKDGv3 5
1YU O7 6.834 0.755 0.409 ETKDGv3 6
1YU C8 5.861 -0.172 -0.006 ETKDGv3 7
1YU C9 6.029 -0.808 -1.184 ETKDGv3 8
1YU C10 5.015 -1.786 -1.649 ETKDGv3 9
1YU C11 3.936 -2.046 -0.905 ETKDGv3 10
1YU C13 3.742 -1.366 0.394 ETKDGv3 11
1YU C14 4.657 -0.479 0.819 ETKDGv3 12
1YU C16 2.501 -1.650 1.205 ETKDGv3 13
1YU C19 1.245 -0.952 0.623 ETKDGv3 14
1YU C21 -0.034 -1.410 1.385 ETKDGv3 15
1YU C23 -1.336 -0.824 0.766 ETKDGv3 16
1YU C25 -1.366 0.705 0.859 ETKDGv3 17
1YU S28 0.002 1.406 -0.072 ETKDGv3 18
1YU C29 1.412 0.582 0.684 ETKDGv3 19
1YU O32 0.097 2.836 0.444 ETKDGv3 20
1YU N33 -2.544 -1.340 1.448 ETKDGv3 21
1YU C35 -3.239 -2.380 0.677 ETKDGv3 22
1YU C38 -3.956 -1.772 -0.503 ETKDGv3 23
1YU C39 -4.878 -0.630 -0.291 ETKDGv3 24
1YU C41 -5.509 -0.030 -1.327 ETKDGv3 25
1YU C42 -5.271 -0.580 -2.698 ETKDGv3 26
1YU C44 -4.453 -1.622 -2.885 ETKDGv3 27
1YU C46 -3.765 -2.245 -1.743 ETKDGv3 28
1YU C48 -6.425 1.184 -1.072 ETKDGv3 29
1YU C49 -5.607 2.324 -0.425 ETKDGv3 30
1YU C53 -7.578 0.778 -0.127 ETKDGv3 31
1YU C57 -7.054 1.736 -2.372 ETKDGv3 32
1YU O61 -0.122 -2.814 1.340 ETKDGv3 33
1YU F63 5.175 -2.422 -2.837 ETKDGv3 34
1YU N64 7.177 -0.545 -2.003 ETKDGv3 35
1YU C67 8.181 2.013 1.955 ETKDGv3 36
1YU F68 8.903 0.867 2.238 ETKDGv3 37
1YU F69 8.818 2.693 0.932 ETKDGv3 38
1YU F70 8.163 2.807 3.088 ETKDGv3 39
1YU H1 6.310 1.088 2.409 ETKDGv3 40
1YU H2 3.201 -2.759 -1.256 ETKDGv3 41
1YU H3 4.500 0.021 1.764 ETKDGv3 42
1YU H4 2.642 -1.346 2.266 ETKDGv3 43
1YU H5 2.357 -2.751 1.208 ETKDGv3 44
1YU H6 1.143 -1.254 -0.443 ETKDGv3 45
1YU H7 0.038 -1.057 2.443 ETKDGv3 46
1YU H8 -1.351 -1.086 -0.318 ETKDGv3 47
1YU H9 -1.300 1.026 1.921 ETKDGv3 48
1YU H10 -2.317 1.090 0.432 ETKDGv3 49
1YU H11 1.514 0.916 1.740 ETKDGv3 50
1YU H12 2.315 0.901 0.124 ETKDGv3 51
1YU H14 -2.311 -1.719 2.396 ETKDGv3 52
1YU H16 -2.527 -3.176 0.364 ETKDGv3 53
1YU H17 -4.002 -2.863 1.325 ETKDGv3 54
1YU H18 -5.017 -0.275 0.721 ETKDGv3 55
1YU H19 -5.749 -0.157 -3.569 ETKDGv3 56
1YU H20 -4.291 -2.010 -3.883 ETKDGv3 57
1YU H21 -3.097 -3.078 -1.924 ETKDGv3 58
1YU H22 -5.212 2.030 0.570 ETKDGv3 59
1YU H23 -6.237 3.228 -0.280 ETKDGv3 60
1YU H24 -4.746 2.597 -1.074 ETKDGv3 61
1YU H25 -8.150 -0.072 -0.559 ETKDGv3 62
1YU H26 -7.201 0.474 0.871 ETKDGv3 63
1YU H27 -8.278 1.628 0.027 ETKDGv3 64
1YU H28 -7.684 0.964 -2.866 ETKDGv3 65
1YU H29 -7.707 2.609 -2.154 ETKDGv3 66
1YU H30 -6.268 2.077 -3.079 ETKDGv3 67
1YU H31 0.111 -3.158 2.243 ETKDGv3 68
1YU H32 7.302 -1.037 -2.915 ETKDGv3 69
1YU H33 7.913 0.138 -1.718 ETKDGv3 70
#