data_21B
#
_chem_comp.id 21B
_chem_comp.name Nortriptyline
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H21 N"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N-methylpropan-1-amine
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-08-14
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 263.377
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 21B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4M48
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
21B C16 C16 C 0 1 N N N N N N -43.098 -1.590 52.125 5.116 2.334 -1.111 C16 21B 1
21B N N N 0 1 N N N N N N -43.098 -2.738 53.001 4.354 1.444 -0.225 N 21B 2
21B C15 C15 C 0 1 N N N N N N -42.972 -2.555 54.431 2.936 1.826 -0.187 C15 21B 3
21B C14 C14 C 0 1 N N N N N N -41.612 -3.009 54.961 2.177 0.879 0.744 C14 21B 4
21B C13 C13 C 0 1 N N N N N N -40.607 -1.909 54.723 0.722 1.271 0.782 C13 21B 5
21B C4 C4 C 0 1 N N N N N N -39.407 -1.754 55.316 -0.223 0.359 0.528 C4 21B 6
21B C3 C3 C 0 1 Y N N N N N -38.627 -0.564 54.875 0.161 -1.063 0.390 C3 21B 7
21B C17 C17 C 0 1 Y N N N N N -39.042 0.731 55.165 1.070 -1.552 1.342 C17 21B 8
21B C18 C18 C 0 1 Y N N N N N -38.271 1.795 54.712 1.466 -2.869 1.327 C18 21B 9
21B C C C 0 1 Y N N N N N -37.111 1.554 53.975 0.953 -3.719 0.363 C 21B 10
21B C5 C5 C 0 1 Y N N N N N -38.794 -2.652 56.360 -1.632 0.793 0.396 C5 21B 11
21B C10 C10 C 0 1 Y N N N N N -39.541 -2.977 57.489 -2.310 1.389 1.456 C10 21B 12
21B C9 C9 C 0 1 Y N N N N N -39.020 -3.788 58.492 -3.623 1.782 1.274 C9 21B 13
21B C8 C8 C 0 1 Y N N N N N -37.724 -4.273 58.393 -4.242 1.581 0.053 C8 21B 14
21B C7 C7 C 0 1 Y N N N N N -36.966 -3.937 57.280 -3.561 0.985 -0.994 C7 21B 15
21B C6 C6 C 0 1 Y N N N N N -37.482 -3.134 56.265 -2.246 0.586 -0.814 C6 21B 16
21B C11 C11 C 0 1 N N N N N N -36.519 -2.862 55.124 -1.503 -0.079 -1.932 C11 21B 17
21B C12 C12 C 0 1 N N N N N N -37.127 -2.243 53.876 -1.289 -1.551 -1.710 C12 21B 18
21B C2 C2 C 0 1 Y N N N N N -37.486 -0.804 54.147 -0.338 -1.902 -0.586 C2 21B 19
21B C1 C1 C 0 1 Y N N N N N -36.710 0.252 53.686 0.067 -3.241 -0.575 C1 21B 20
21B H1 H1 H 0 1 N N N N N N -43.202 -1.924 51.082 6.162 2.029 -1.120 H1 21B 21
21B H2 H2 H 0 1 N N N N N N -43.939 -0.931 52.385 4.711 2.274 -2.121 H2 21B 22
21B H3 H3 H 0 1 N N N N N N -42.152 -1.040 52.241 5.040 3.360 -0.749 H3 21B 23
21B H4 H4 H 0 1 N N N N N N -43.961 -3.220 52.846 4.462 0.480 -0.501 H4 21B 24
21B H6 H6 H 0 1 N N N N N N -43.103 -1.488 54.663 2.845 2.848 0.181 H6 21B 25
21B H7 H7 H 0 1 N N N N N N -43.759 -3.138 54.932 2.516 1.763 -1.191 H7 21B 26
21B H8 H8 H 0 1 N N N N N N -41.685 -3.216 56.039 2.269 -0.143 0.376 H8 21B 27
21B H9 H9 H 0 1 N N N N N N -41.295 -3.920 54.433 2.597 0.942 1.748 H9 21B 28
21B H10 H10 H 0 1 N N N N N N -40.881 -1.160 53.994 0.443 2.288 1.014 H10 21B 29
21B H11 H11 H 0 1 N N N N N N -39.945 0.907 55.731 1.463 -0.886 2.095 H11 21B 30
21B H12 H12 H 0 1 N N N N N N -38.570 2.809 54.931 2.171 -3.236 2.059 H12 21B 31
21B H13 H13 H 0 1 N N N N N N -36.518 2.386 53.625 1.247 -4.758 0.347 H13 21B 32
21B H14 H14 H 0 1 N N N N N N -40.545 -2.592 57.588 -1.818 1.541 2.405 H14 21B 33
21B H15 H15 H 0 1 N N N N N N -39.626 -4.041 59.350 -4.166 2.245 2.085 H15 21B 34
21B H16 H16 H 0 1 N N N N N N -37.312 -4.901 59.169 -5.267 1.892 -0.085 H16 21B 35
21B H17 H17 H 0 1 N N N N N N -35.954 -4.306 57.199 -4.051 0.832 -1.944 H17 21B 36
21B H18 H18 H 0 1 N N N N N N -36.059 -3.819 54.836 -2.065 0.058 -2.856 H18 21B 37
21B H19 H19 H 0 1 N N N N N N -35.741 -2.178 55.495 -0.531 0.402 -2.040 H19 21B 38
21B H20 H20 H 0 1 N N N N N N -38.033 -2.800 53.596 -2.256 -2.007 -1.496 H20 21B 39
21B H21 H21 H 0 1 N N N N N N -36.399 -2.290 53.053 -0.906 -1.986 -2.633 H21 21B 40
21B H22 H22 H 0 1 N N N N N N -35.813 0.067 53.114 -0.325 -3.916 -1.321 H22 21B 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
21B C16 N SING N N 1
21B N C15 SING N N 2
21B C1 C DOUB Y N 3
21B C1 C2 SING Y N 4
21B C12 C2 SING N N 5
21B C12 C11 SING N N 6
21B C C18 SING Y N 7
21B C2 C3 DOUB Y N 8
21B C15 C14 SING N N 9
21B C18 C17 DOUB Y N 10
21B C13 C14 SING N N 11
21B C13 C4 DOUB N N 12
21B C3 C17 SING Y N 13
21B C3 C4 SING N N 14
21B C11 C6 SING N N 15
21B C4 C5 SING N N 16
21B C6 C5 DOUB Y N 17
21B C6 C7 SING Y N 18
21B C5 C10 SING Y N 19
21B C7 C8 DOUB Y N 20
21B C10 C9 DOUB Y N 21
21B C8 C9 SING Y N 22
21B C16 H1 SING N N 23
21B C16 H2 SING N N 24
21B C16 H3 SING N N 25
21B N H4 SING N N 26
21B C15 H6 SING N N 27
21B C15 H7 SING N N 28
21B C14 H8 SING N N 29
21B C14 H9 SING N N 30
21B C13 H10 SING N N 31
21B C17 H11 SING N N 32
21B C18 H12 SING N N 33
21B C H13 SING N N 34
21B C10 H14 SING N N 35
21B C9 H15 SING N N 36
21B C8 H16 SING N N 37
21B C7 H17 SING N N 38
21B C11 H18 SING N N 39
21B C11 H19 SING N N 40
21B C12 H20 SING N N 41
21B C12 H21 SING N N 42
21B C1 H22 SING N N 43
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
21B SMILES ACDLabs 12.01 c3cc2c(/C(c1c(cccc1)CC2)=C/CCNC)cc3
21B InChI InChI 1.03 InChI=1S/C19H21N/c1-20-14-6-11-19-17-9-4-2-7-15(17)12-13-16-8-3-5-10-18(16)19/h2-5,7-11,20H,6,12-14H2,1H3
21B InChIKey InChI 1.03 PHVGLTMQBUFIQQ-UHFFFAOYSA-N
21B SMILES_CANONICAL CACTVS 3.385 CNCCC=C1c2ccccc2CCc3ccccc13
21B SMILES CACTVS 3.385 CNCCC=C1c2ccccc2CCc3ccccc13
21B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CNCCC=C1c2ccccc2CCc3c1cccc3
21B SMILES "OpenEye OEToolkits" 1.7.6 CNCCC=C1c2ccccc2CCc3c1cccc3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
21B "SYSTEMATIC NAME" ACDLabs 12.01 3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N-methylpropan-1-amine
21B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-(5,6-dihydrodibenzo[1,2-a:1',2'-e][7]annulen-11-ylidene)-N-methyl-propan-1-amine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
21B 'Create component' 2013-08-14 RCSB
21B 'Initial release' 2013-09-18 RCSB
21B 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 21B
_pdbx_chem_comp_synonyms.name 3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N-methylpropan-1-amine
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 21B
_pdbe_chem_comp_drugbank_details.drugbank_id DB00540
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Nortriptyline
_pdbe_chem_comp_drugbank_details.description
'Nortriptyline hydrochloride, the active metabolite of [amitriptyline], is a tricyclic antidepressant (TCA).[L11878] It is used in the treatment of major depression and is also used off-label for chronic pain and other conditions.[L11881]'
_pdbe_chem_comp_drugbank_details.cas_number 72-69-5
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'Though prescribing information does not identify a specific mechanism of action for nortriptyline[L11878], is believed that nortriptyline either inhibits the reuptake of the neurotransmitter serotonin at the neuronal membrane or acts at the level of the beta-adrenergic receptors. It displays a more selective reuptake inhibition for noradrenaline, which may explain increased symptom improvement after nortriptyline therapy.[T28] Tricyclic antidepressants do not inhibit monoamine oxidase nor do they affect dopamine reuptake.[L11878] As with other tricyclics, nortriptyline displays affinity for other receptors including mACh receptors, histamine receptors, 5-HT receptors, in addition to other receptors.[A18198,A4909,T28]'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
21B '3-(10,11-dihydro-5H-dibenzo[a,d][7]annulen-5-ylidene)-N-methylpropan-1-amine' wwPDB ?
21B '10,11-dihydro-N-methyl-5H-dibenzo[a,d]cycloheptene-Δ5,γ-propylamine' DrugBank ?
21B '3-(10,11-dihydro-5H-dibenzo[a,d]cyclohepten-5-ylidene)-N-methyl-1-propanamine' DrugBank ?
21B Demethylamitriptyline DrugBank ?
21B Desmethylamitriptyline DrugBank ?
21B Nortriptyline DrugBank ?
21B Nortriptylinum DrugBank ?
21B Allegron DrugBank 'International brand'
21B Ateben DrugBank 'International brand'
21B Avantyl DrugBank 'International brand'
21B Noritren DrugBank 'International brand'
21B Norpress DrugBank 'International brand'
21B Nortrilen DrugBank 'International brand'
21B Psychostyl DrugBank 'International brand'
21B Sensaval DrugBank 'International brand'
21B Sensoval DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id 21B
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00540
_pdbe_chem_comp_drugbank_classification.parent Dibenzocycloheptenes
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Dibenzocycloheptenes
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as dibenzocycloheptenes. These are compounds containing a dibenzocycloheptene moiety, which consists of two benzene rings connected by a cycloheptene ring.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
21B DB00540 'Sodium-dependent noradrenaline transporter' Humans P23975 yes 1
21B DB00540 'Sodium-dependent serotonin transporter' Humans P31645 yes 2
21B DB00540 '5-hydroxytryptamine receptor 2A' Humans P28223 yes 3
21B DB00540 '5-hydroxytryptamine receptor 1A' Humans P08908 unknown 4
21B DB00540 'Histamine H1 receptor' Humans P35367 no 5
21B DB00540 'Alpha-1A adrenergic receptor' Humans P35348 no 6
21B DB00540 'Alpha-1D adrenergic receptor' Humans P25100 no 7
21B DB00540 '5-hydroxytryptamine receptor 2C' Humans P28335 unknown 8
21B DB00540 'Alpha-1B adrenergic receptor' Humans P35368 unknown 9
21B DB00540 'Alpha-2A adrenergic receptor' Humans P08913 unknown 10
21B DB00540 'Alpha-2B adrenergic receptor' Humans P18089 unknown 11
21B DB00540 'Alpha-2C adrenergic receptor' Humans P18825 unknown 12
21B DB00540 'Beta-1 adrenergic receptor' Humans P08588 unknown 13
21B DB00540 'Beta-2 adrenergic receptor' Humans P07550 unknown 14
21B DB00540 'Beta-3 adrenergic receptor' Humans P13945 unknown 15
21B DB00540 'D(2) dopamine receptor' Humans P14416 unknown 16
21B DB00540 'Membrane-associated progesterone receptor component 1' Humans O00264 unknown 17
21B DB00540 'Sigma non-opioid intracellular receptor 1' Humans Q99720 unknown 18
21B DB00540 '5-hydroxytryptamine receptor 2C' Rat P08909 unknown 19
21B DB00540 'Muscarinic acetylcholine receptor M1' Humans P11229 unknown 20
21B DB00540 'Muscarinic acetylcholine receptor M2' Humans P08172 unknown 21
21B DB00540 'Muscarinic acetylcholine receptor M3' Humans P20309 unknown 22
21B DB00540 'Muscarinic acetylcholine receptor M4' Humans P08173 unknown 23
21B DB00540 'Muscarinic acetylcholine receptor M5' Humans P08912 unknown 24
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
21B C16 C 4.726 -4.643 1
21B N N 4.726 -3.143 2
21B C15 C 6.025 -2.393 3
21B C14 C 6.026 -0.893 4
21B C13 C 7.324 -0.143 5
21B C4 C 7.324 1.357 6
21B C3 C 5.973 2.008 7
21B C17 C 4.844 0.928 8
21B C18 C 3.348 1.377 9
21B C C 3.000 2.900 10
21B C5 C 8.676 2.008 11
21B C10 C 9.805 0.928 12
21B C9 C 11.301 1.377 13
21B C8 C 11.649 2.900 14
21B C7 C 10.495 3.954 15
21B C6 C 9.010 3.470 16
21B C11 C 8.075 4.643 17
21B C12 C 6.574 4.643 18
21B C2 C 5.639 3.470 19
21B C1 C 4.154 3.954 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
21B C16 N SINGLE NONE 1
21B N C15 SINGLE NONE 2
21B C1 C DOUBLE NONE 3
21B C1 C2 SINGLE NONE 4
21B C12 C2 SINGLE NONE 5
21B C12 C11 SINGLE NONE 6
21B C C18 SINGLE NONE 7
21B C2 C3 DOUBLE NONE 8
21B C15 C14 SINGLE NONE 9
21B C18 C17 DOUBLE NONE 10
21B C13 C14 SINGLE NONE 11
21B C13 C4 DOUBLE NONE 12
21B C3 C17 SINGLE NONE 13
21B C3 C4 SINGLE NONE 14
21B C11 C6 SINGLE NONE 15
21B C4 C5 SINGLE NONE 16
21B C6 C5 DOUBLE NONE 17
21B C6 C7 SINGLE NONE 18
21B C5 C10 SINGLE NONE 19
21B C7 C8 DOUBLE NONE 20
21B C10 C9 DOUBLE NONE 21
21B C8 C9 SINGLE NONE 22
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
21B MurckoScaffold S1 scaffold C=C1c2ccccc2CCc2ccccc21 InChI=1S/C16H14/c1-12-15-8-4-2-6-13(15)10-11-14-7-3-5-9-16(12)14/h2-9H,1,10-11H2 SRTMGQXUCMILBQ-UHFFFAOYSA-N
21B phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
21B C13 S1 1
21B C4 S1 1
21B C3 S1 1
21B C17 S1 1
21B C18 S1 1
21B C S1 1
21B C5 S1 1
21B C10 S1 1
21B C9 S1 1
21B C8 S1 1
21B C7 S1 1
21B C6 S1 1
21B C11 S1 1
21B C12 S1 1
21B C2 S1 1
21B C1 S1 1
21B C3 F1 1
21B C2 F1 1
21B C1 F1 1
21B C F1 1
21B C18 F1 1
21B C17 F1 1
21B C5 F1 2
21B C6 F1 2
21B C7 F1 2
21B C8 F1 2
21B C9 F1 2
21B C10 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id 21B
_pdbe_chem_comp_rdkit_properties.exactmw 263.167
_pdbe_chem_comp_rdkit_properties.amw 263.384
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 41
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.263
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 150.460
_pdbe_chem_comp_rdkit_properties.tpsa 12.030
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.608
_pdbe_chem_comp_rdkit_properties.CrippenMR 84.851
_pdbe_chem_comp_rdkit_properties.chi0v 9.947
_pdbe_chem_comp_rdkit_properties.chi1v 5.447
_pdbe_chem_comp_rdkit_properties.chi2v 2.487
_pdbe_chem_comp_rdkit_properties.chi3v 2.487
_pdbe_chem_comp_rdkit_properties.chi4v 1.681
_pdbe_chem_comp_rdkit_properties.chi0n 30.947
_pdbe_chem_comp_rdkit_properties.chi1n 15.894
_pdbe_chem_comp_rdkit_properties.chi2n 2.487
_pdbe_chem_comp_rdkit_properties.chi3n 2.487
_pdbe_chem_comp_rdkit_properties.chi4n 1.681
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.860
_pdbe_chem_comp_rdkit_properties.kappa1 3.149
_pdbe_chem_comp_rdkit_properties.kappa2 6.062
_pdbe_chem_comp_rdkit_properties.kappa3 2.543
_pdbe_chem_comp_rdkit_properties.Phi 0.954
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
21B UniChem ChEMBL CHEMBL445
21B UniChem DrugBank DB00540
21B UniChem PDBe 21B
21B UniChem 'Guide to Pharmacology' 2404
21B UniChem 'KEGG LIGAND' C07274
21B UniChem ChEBI 7640
21B UniChem ZINC ZINC000001530741
21B UniChem fdasrs BL03SY4LXB
21B UniChem SureChEMBL SCHEMBL34527
21B UniChem PharmGKB PA450657
21B UniChem HMDB HMDB0014680
21B UniChem 'PubChem TPHARMA' 14799043
21B UniChem NMRShiftDB 60027264
21B UniChem LINCS LSM-4039
21B UniChem ACTor 72-69-5
21B UniChem Nikkaji J5.253A
21B UniChem BindingDb 112777
21B UniChem DrugCentral 1971
21B UniChem MetaboLights MTBLC7640
21B UniChem BRENDA 11504
21B UniChem BRENDA 145062
21B UniChem BRENDA 145976
21B UniChem BRENDA 75635
21B UniChem ChemicalBook CB1317147
21B UniChem DailyMed NORTRIPTYLINE
21B UniChem ClinicalTrials AVENTYL
21B UniChem ClinicalTrials NORTRILEN
21B UniChem ClinicalTrials NORTRIPTYLINE
21B UniChem ClinicalTrials 'NORTRIPTYLINE HYDROCHLORIDE'
21B UniChem ClinicalTrials PAMELOR
21B UniChem rxnorm NORTRIPTYLINE
21B UniChem rxnorm 'NORTRIPTYLINE HYDROCHLORIDE'
21B UniChem rxnorm PAMELOR
21B UniChem 'Probes And Drugs' PD009970
21B UniChem 'EPA CompTox Dashboard' DTXSID9023384
21B UniChem PubChem 4543
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
21B C16 5.482 -0.085 1.777 ETKDGv3 1
21B N 4.341 0.561 1.126 ETKDGv3 2
21B C15 3.296 -0.427 0.834 ETKDGv3 3
21B C14 2.064 0.273 0.255 ETKDGv3 4
21B C13 0.957 -0.711 -0.030 ETKDGv3 5
21B C4 -0.284 -0.342 -0.407 ETKDGv3 6
21B C3 -1.340 -1.377 -0.581 ETKDGv3 7
21B C17 -0.976 -2.593 -1.365 ETKDGv3 8
21B C18 -1.861 -3.570 -1.572 ETKDGv3 9
21B C -3.222 -3.456 -1.032 ETKDGv3 10
21B C5 -0.629 1.084 -0.591 ETKDGv3 11
21B C10 -0.023 1.858 -1.703 ETKDGv3 12
21B C9 -0.333 3.148 -1.873 ETKDGv3 13
21B C8 -1.287 3.806 -0.959 ETKDGv3 14
21B C7 -1.845 3.112 0.040 ETKDGv3 15
21B C6 -1.501 1.682 0.241 ETKDGv3 16
21B C11 -2.177 0.886 1.321 ETKDGv3 17
21B C12 -3.178 -0.090 0.701 ETKDGv3 18
21B C2 -2.608 -1.272 -0.075 ETKDGv3 19
21B C1 -3.575 -2.374 -0.334 ETKDGv3 20
21B H1 5.177 -0.514 2.755 ETKDGv3 21
21B H2 6.274 0.671 1.966 ETKDGv3 22
21B H3 5.907 -0.886 1.132 ETKDGv3 23
21B H4 4.682 0.953 0.216 ETKDGv3 24
21B H6 3.672 -1.179 0.103 ETKDGv3 25
21B H7 3.000 -0.951 1.771 ETKDGv3 26
21B H8 1.705 1.030 0.986 ETKDGv3 27
21B H9 2.351 0.787 -0.686 ETKDGv3 28
21B H10 1.161 -1.763 0.140 ETKDGv3 29
21B H11 0.014 -2.688 -1.793 ETKDGv3 30
21B H12 -1.582 -4.443 -2.148 ETKDGv3 31
21B H13 -3.939 -4.247 -1.209 ETKDGv3 32
21B H14 0.663 1.377 -2.389 ETKDGv3 33
21B H15 0.108 3.710 -2.687 ETKDGv3 34
21B H16 -1.539 4.848 -1.104 ETKDGv3 35
21B H17 -2.552 3.600 0.699 ETKDGv3 36
21B H18 -1.430 0.339 1.937 ETKDGv3 37
21B H19 -2.721 1.570 2.008 ETKDGv3 38
21B H20 -3.797 -0.491 1.534 ETKDGv3 39
21B H21 -3.869 0.469 0.032 ETKDGv3 40
21B H22 -4.587 -2.305 0.047 ETKDGv3 41
#