data_21V
#
_chem_comp.id 21V
_chem_comp.name
"N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H25 N5 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "5,10-dideazatetrahydrofolic acid"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-08-22
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 443.453
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 21V
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4M6L
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
21V OE2 OE2 O 0 1 N N N N N N 16.871 4.847 -24.703 -6.370 4.518 0.432 OE2 21V 1
21V CD CD C 0 1 N N N N N N 17.192 3.646 -24.553 -6.777 3.334 -0.050 CD 21V 2
21V OE1 OE1 O 0 1 N N N N N N 18.313 3.205 -24.898 -7.630 3.291 -0.905 OE1 21V 3
21V CG CG C 0 1 N N N N N N 16.190 2.692 -23.933 -6.170 2.057 0.473 CG 21V 4
21V CB CB C 0 1 N N N N N N 15.480 3.322 -22.737 -6.806 0.861 -0.238 CB 21V 5
21V CA CA C 0 1 N N S N N N 16.337 3.317 -21.472 -6.189 -0.434 0.293 CA 21V 6
21V CT CT C 0 1 N N N N N N 16.436 1.915 -20.919 -6.900 -1.615 -0.317 CT 21V 7
21V O1 O1 O 0 1 N N N N N N 17.511 1.282 -21.073 -6.283 -2.414 -0.981 O1 21V 8
21V O2 O2 O 0 1 N N N N N N 15.438 1.426 -20.333 -8.218 -1.780 -0.122 O2 21V 9
21V N N N 0 1 N N N N N N 17.653 3.881 -21.721 -4.769 -0.482 -0.063 N 21V 10
21V C C C 0 1 N N N N N N 17.907 5.181 -21.854 -3.913 -1.214 0.676 C 21V 11
21V O O O 0 1 N N N N N N 17.040 6.042 -21.771 -4.319 -1.836 1.638 O 21V 12
21V C11 C11 C 0 1 Y N N N N N 19.331 5.578 -22.084 -2.480 -1.262 0.317 C11 21V 13
21V C12 C12 C 0 1 Y N N N N N 19.680 6.785 -22.710 -2.009 -0.545 -0.785 C12 21V 14
21V C13 C13 C 0 1 Y N N N N N 21.022 7.114 -22.879 -0.670 -0.593 -1.114 C13 21V 15
21V C16 C16 C 0 1 Y N N N N N 20.316 4.712 -21.638 -1.590 -2.019 1.080 C16 21V 16
21V C15 C15 C 0 1 Y N N N N N 21.650 5.047 -21.816 -0.254 -2.059 0.740 C15 21V 17
21V C14 C14 C 0 1 Y N N N N N 22.009 6.237 -22.442 0.205 -1.350 -0.356 C14 21V 18
21V C10 C10 C 0 1 N N N N N N 23.479 6.559 -22.597 1.666 -1.399 -0.723 C10 21V 19
21V C9 C9 C 0 1 N N N N N N 23.930 6.322 -24.019 2.411 -0.276 0.002 C9 21V 20
21V C6 C6 C 0 1 N N S N N N 23.775 4.842 -24.324 3.895 -0.326 -0.370 C6 21V 21
21V C7 C7 C 0 1 N N N N N N 25.151 4.188 -24.276 4.515 -1.628 0.155 C7 21V 22
21V N8 N8 N 0 1 N N N N N N 25.200 2.894 -24.947 5.923 -1.653 -0.260 N8 21V 23
21V C5 C5 C 0 1 N N N N N N 23.171 4.834 -25.706 4.624 0.856 0.270 C5 21V 24
21V C4A C4A C 0 1 N N N N N N 23.349 3.483 -26.336 6.112 0.694 0.126 C4A 21V 25
21V C4 C4 C 0 1 N N N N N N 22.494 3.158 -27.348 6.946 1.827 0.250 C4 21V 26
21V O4 O4 O 0 1 N N N N N N 21.598 3.979 -27.715 6.458 2.927 0.467 O4 21V 27
21V C8A C8A C 0 1 N N N N N N 24.333 2.584 -25.922 6.685 -0.515 -0.120 C8A 21V 28
21V N1 N1 N 0 1 N N N N N N 24.450 1.387 -26.557 8.049 -0.600 -0.233 N1 21V 29
21V C2 C2 C 0 1 N N N N N N 23.601 1.089 -27.557 8.818 0.516 -0.103 C2 21V 30
21V N3 N3 N 0 1 N N N N N N 22.637 1.953 -27.944 8.276 1.691 0.131 N3 21V 31
21V NA2 NA2 N 0 1 N N N N N N 23.690 -0.111 -28.167 10.179 0.413 -0.218 NA2 21V 32
21V H1 H1 H 0 1 N N N N N N 17.592 5.321 -25.100 -6.788 5.309 0.066 H1 21V 33
21V H2 H2 H 0 1 N N N N N N 15.440 2.420 -24.690 -5.096 2.063 0.286 H2 21V 34
21V H3 H3 H 0 1 N N N N N N 16.718 1.787 -23.598 -6.352 1.982 1.545 H3 21V 35
21V H4 H4 H 0 1 N N N N N N 15.227 4.363 -22.986 -7.879 0.856 -0.052 H4 21V 36
21V H5 H5 H 0 1 N N N N N N 14.557 2.758 -22.539 -6.624 0.937 -1.311 H5 21V 37
21V H6 H6 H 0 1 N N N N N N 15.826 3.939 -20.722 -6.293 -0.468 1.377 H6 21V 38
21V H7 H7 H 0 1 N N N N N N 15.639 0.543 -20.047 -8.629 -2.552 -0.533 H7 21V 39
21V H8 H8 H 0 1 N N N N N N 18.423 3.247 -21.798 -4.445 0.014 -0.831 H8 21V 40
21V H9 H9 H 0 1 N N N N N N 18.910 7.456 -23.059 -2.691 0.047 -1.377 H9 21V 41
21V H10 H10 H 0 1 N N N N N N 21.296 8.047 -23.348 -0.305 -0.038 -1.966 H10 21V 42
21V H11 H11 H 0 1 N N N N N N 20.047 3.784 -21.156 -1.947 -2.573 1.936 H11 21V 43
21V H12 H12 H 0 1 N N N N N N 22.420 4.376 -21.464 0.435 -2.645 1.330 H12 21V 44
21V H13 H13 H 0 1 N N N N N N 24.063 5.917 -21.921 2.083 -2.362 -0.428 H13 21V 45
21V H14 H14 H 0 1 N N N N N N 23.647 7.614 -22.336 1.775 -1.271 -1.800 H14 21V 46
21V H15 H15 H 0 1 N N N N N N 24.984 6.617 -24.130 1.994 0.687 -0.294 H15 21V 47
21V H16 H16 H 0 1 N N N N N N 23.310 6.912 -24.710 2.302 -0.404 1.079 H16 21V 48
21V H17 H17 H 0 1 N N N N N N 23.097 4.367 -23.600 4.002 -0.281 -1.454 H17 21V 49
21V H18 H18 H 0 1 N N N N N N 25.433 4.045 -23.222 4.450 -1.655 1.243 H18 21V 50
21V H19 H19 H 0 1 N N N N N N 25.874 4.860 -24.761 3.989 -2.484 -0.267 H19 21V 51
21V H20 H20 H 0 1 N N N N N N 23.670 5.594 -26.326 4.313 1.780 -0.218 H20 21V 52
21V H21 H21 H 0 1 N N N N N N 22.098 5.065 -25.636 4.371 0.905 1.329 H21 21V 53
21V H24 H24 H 0 1 N N N N N N 23.048 -0.351 -28.895 10.587 -0.450 -0.391 H24 21V 54
21V H25 H25 H 0 1 N N N N N N 24.398 -0.761 -27.891 10.734 1.202 -0.127 H25 21V 55
21V H26 H26 H 0 1 N N N N N N 25.086 2.201 -24.235 6.312 -2.461 -0.628 H26 21V 56
21V H22 H22 H 0 1 N N N N N N 25.159 0.736 -26.284 8.467 -1.458 -0.405 H22 21V 57
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
21V NA2 C2 SING N N 1
21V N3 C2 DOUB N N 2
21V N3 C4 SING N N 3
21V O4 C4 DOUB N N 4
21V C2 N1 SING N N 5
21V C4 C4A SING N N 6
21V N1 C8A SING N N 7
21V C4A C8A DOUB N N 8
21V C4A C5 SING N N 9
21V C8A N8 SING N N 10
21V C5 C6 SING N N 11
21V N8 C7 SING N N 12
21V OE1 CD DOUB N N 13
21V OE2 CD SING N N 14
21V CD CG SING N N 15
21V C6 C7 SING N N 16
21V C6 C9 SING N N 17
21V C9 C10 SING N N 18
21V CG CB SING N N 19
21V C13 C12 DOUB Y N 20
21V C13 C14 SING Y N 21
21V CB CA SING N N 22
21V C12 C11 SING Y N 23
21V C10 C14 SING N N 24
21V C14 C15 DOUB Y N 25
21V C11 C SING N N 26
21V C11 C16 DOUB Y N 27
21V C O DOUB N N 28
21V C N SING N N 29
21V C15 C16 SING Y N 30
21V N CA SING N N 31
21V CA CT SING N N 32
21V O1 CT DOUB N N 33
21V CT O2 SING N N 34
21V OE2 H1 SING N N 35
21V CG H2 SING N N 36
21V CG H3 SING N N 37
21V CB H4 SING N N 38
21V CB H5 SING N N 39
21V CA H6 SING N N 40
21V O2 H7 SING N N 41
21V N H8 SING N N 42
21V C12 H9 SING N N 43
21V C13 H10 SING N N 44
21V C16 H11 SING N N 45
21V C15 H12 SING N N 46
21V C10 H13 SING N N 47
21V C10 H14 SING N N 48
21V C9 H15 SING N N 49
21V C9 H16 SING N N 50
21V C6 H17 SING N N 51
21V C7 H18 SING N N 52
21V C7 H19 SING N N 53
21V C5 H20 SING N N 54
21V C5 H21 SING N N 55
21V NA2 H24 SING N N 56
21V NA2 H25 SING N N 57
21V N8 H26 SING N N 58
21V N1 H22 SING N N 59
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
21V SMILES ACDLabs 12.01 O=C(O)C(NC(=O)c1ccc(cc1)CCC3CC=2C(=O)N=C(NC=2NC3)N)CCC(=O)O
21V InChI InChI 1.03 InChI=1S/C21H25N5O6/c22-21-25-17-14(19(30)26-21)9-12(10-23-17)2-1-11-3-5-13(6-4-11)18(29)24-15(20(31)32)7-8-16(27)28/h3-6,12,15H,1-2,7-10H2,(H,24,29)(H,27,28)(H,31,32)(H4,22,23,25,26,30)/t12-,15-/m0/s1
21V InChIKey InChI 1.03 ZUQBAQVRAURMCL-WFASDCNBSA-N
21V SMILES_CANONICAL CACTVS 3.385 NC1=NC(=O)C2=C(NC[C@@H](CCc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)C2)N1
21V SMILES CACTVS 3.385 NC1=NC(=O)C2=C(NC[CH](CCc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)C2)N1
21V SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1cc(ccc1CC[C@H]2CC3=C(NC2)NC(=NC3=O)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O
21V SMILES "OpenEye OEToolkits" 1.7.6 c1cc(ccc1CCC2CC3=C(NC2)NC(=NC3=O)N)C(=O)NC(CCC(=O)O)C(=O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
21V "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-{2-[(6S)-2-amino-4-oxo-1,4,5,6,7,8-hexahydropyrido[2,3-d]pyrimidin-6-yl]ethyl}benzoyl)-L-glutamic acid"
21V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[4-[2-[(6S)-2-azanyl-4-oxidanylidene-5,6,7,8-tetrahydro-1H-pyrido[2,3-d]pyrimidin-6-yl]ethyl]phenyl]carbonylamino]pentanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
21V 'Create component' 2013-08-22 RCSB
21V 'Initial release' 2013-09-25 RCSB
21V 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 21V
_pdbx_chem_comp_synonyms.name "5,10-dideazatetrahydrofolic acid"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id 21V
_pdbe_chem_comp_drugbank_details.drugbank_id DB04322
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name LY249543
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id 21V
_pdbe_chem_comp_synonyms.name '5,10-dideazatetrahydrofolic acid'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 21V
_pdbe_chem_comp_drugbank_classification.drugbank_id DB04322
_pdbe_chem_comp_drugbank_classification.parent 'Glutamic acid and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as glutamic acid and derivatives. These are compounds containing glutamic acid or a derivative thereof resulting from reaction of glutamic acid at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id 21V
_pdbe_chem_comp_drugbank_targets.drugbank_id DB04322
_pdbe_chem_comp_drugbank_targets.name 'C-1-tetrahydrofolate synthase, cytoplasmic'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P11586
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
21V OE2 O 6.423 4.931 1
21V CD C 5.121 4.187 2
21V OE1 O 3.825 4.942 3
21V CG C 5.115 2.687 4
21V CB C 6.411 1.932 5
21V CA C 6.405 0.431 6
21V CT C 5.103 -0.313 7
21V O1 O 3.807 0.442 8
21V O2 O 5.098 -1.813 9
21V N N 7.701 -0.323 10
21V C C 9.003 0.422 11
21V O O 9.009 1.921 12
21V C11 C 10.300 -0.334 13
21V C12 C 11.601 0.412 14
21V C13 C 12.897 -0.343 15
21V C16 C 10.294 -1.833 16
21V C15 C 11.590 -2.588 17
21V C14 C 12.892 -1.843 18
21V C10 C 14.188 -2.598 19
21V C9 C 15.490 -1.853 20
21V C6 C 16.786 -2.608 21
21V C7 C 16.786 -4.171 22
21V N8 N 18.145 -4.942 23
21V C5 C 18.145 -1.838 24
21V C4A C 19.486 -2.640 25
21V C4 C 20.785 -1.890 26
21V O4 O 20.785 -0.390 27
21V C8A C 19.486 -4.140 28
21V N1 N 20.785 -4.890 29
21V C2 C 22.084 -4.140 30
21V N3 N 22.084 -2.640 31
21V NA2 N 23.383 -4.890 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
21V NA2 C2 SINGLE NONE 1
21V N3 C2 DOUBLE NONE 2
21V N3 C4 SINGLE NONE 3
21V O4 C4 DOUBLE NONE 4
21V C2 N1 SINGLE NONE 5
21V C4 C4A SINGLE NONE 6
21V N1 C8A SINGLE NONE 7
21V C4A C8A DOUBLE NONE 8
21V C4A C5 SINGLE NONE 9
21V C8A N8 SINGLE NONE 10
21V C5 C6 SINGLE NONE 11
21V N8 C7 SINGLE NONE 12
21V OE1 CD DOUBLE NONE 13
21V OE2 CD SINGLE NONE 14
21V CD CG SINGLE NONE 15
21V C6 C7 SINGLE NONE 16
21V C6 C9 SINGLE BEGINWEDGE 17
21V C9 C10 SINGLE NONE 18
21V CG CB SINGLE NONE 19
21V C13 C12 SINGLE NONE 20
21V C13 C14 DOUBLE NONE 21
21V CA CB SINGLE BEGINDASH 22
21V C12 C11 DOUBLE NONE 23
21V C10 C14 SINGLE NONE 24
21V C14 C15 SINGLE NONE 25
21V C11 C SINGLE NONE 26
21V C11 C16 SINGLE NONE 27
21V C O DOUBLE NONE 28
21V C N SINGLE NONE 29
21V C15 C16 DOUBLE NONE 30
21V N CA SINGLE NONE 31
21V CA CT SINGLE NONE 32
21V O1 CT DOUBLE NONE 33
21V CT O2 SINGLE NONE 34
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
21V MurckoScaffold S1 scaffold 'O=c1nc[nH]c2c1C[C@H](CCc1ccccc1)CN2' InChI=1S/C15H17N3O/c19-15-13-8-12(9-16-14(13)17-10-18-15)7-6-11-4-2-1-3-5-11/h1-5,10,12H,6-9H2,(H2,16,17,18,19)/t12-/m0/s1 GBFDGBIFHKYKQT-LBPRGKRZSA-N
21V amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
21V peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
21V phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
21V pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
21V Z1139192314 F5 fragment 'O=c1[nH]cnc2c1CCCN2' InChI=1S/C7H9N3O/c11-7-5-2-1-3-8-6(5)9-4-10-7/h4H,1-3H2,(H2,8,9,10,11) YJIRCOHLVHBXAK-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
21V C11 S1 1
21V C12 S1 1
21V C13 S1 1
21V C16 S1 1
21V C15 S1 1
21V C14 S1 1
21V C10 S1 1
21V C9 S1 1
21V C6 S1 1
21V C7 S1 1
21V N8 S1 1
21V C5 S1 1
21V C4A S1 1
21V C4 S1 1
21V O4 S1 1
21V C8A S1 1
21V N1 S1 1
21V C2 S1 1
21V N3 S1 1
21V N F1 1
21V C F1 1
21V O F1 1
21V C11 F1 1
21V O1 F2 1
21V CT F2 1
21V CA F2 1
21V N F2 1
21V C11 F3 1
21V C12 F3 1
21V C13 F3 1
21V C14 F3 1
21V C15 F3 1
21V C16 F3 1
21V C4A F4 1
21V C4 F4 1
21V N3 F4 1
21V C2 F4 1
21V N1 F4 1
21V C8A F4 1
21V O4 F5 1
21V C4 F5 1
21V N3 F5 1
21V C2 F5 1
21V N1 F5 1
21V C8A F5 1
21V N8 F5 1
21V C7 F5 1
21V C6 F5 1
21V C5 F5 1
21V C4A F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 21V
_pdbe_chem_comp_rdkit_properties.exactmw 443.180
_pdbe_chem_comp_rdkit_properties.amw 443.460
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 57
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.381
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 218.198
_pdbe_chem_comp_rdkit_properties.tpsa 187.500
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.591
_pdbe_chem_comp_rdkit_properties.CrippenMR 113.139
_pdbe_chem_comp_rdkit_properties.chi0v 15.186
_pdbe_chem_comp_rdkit_properties.chi1v 7.987
_pdbe_chem_comp_rdkit_properties.chi2v 3.210
_pdbe_chem_comp_rdkit_properties.chi3v 3.210
_pdbe_chem_comp_rdkit_properties.chi4v 1.929
_pdbe_chem_comp_rdkit_properties.chi0n 40.186
_pdbe_chem_comp_rdkit_properties.chi1n 20.040
_pdbe_chem_comp_rdkit_properties.chi2n 3.210
_pdbe_chem_comp_rdkit_properties.chi3n 3.210
_pdbe_chem_comp_rdkit_properties.chi4n 1.929
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.890
_pdbe_chem_comp_rdkit_properties.kappa1 6.802
_pdbe_chem_comp_rdkit_properties.kappa2 9.945
_pdbe_chem_comp_rdkit_properties.kappa3 5.836
_pdbe_chem_comp_rdkit_properties.Phi 2.114
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
21V UniChem DrugBank DB04322
21V UniChem PDBe 21V
21V UniChem PDBe L24
21V UniChem ZINC ZINC000001637602
21V UniChem 'PubChem TPHARMA' 14832926
21V UniChem 'PubChem TPHARMA' 16222704
21V UniChem PubChem 135409836
21V UniChem Nikkaji J528.987D
21V UniChem BRENDA 50403
21V UniChem MedChemExpress HY-117058
21V UniChem 'Probes And Drugs' PD059320
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
21V OE2 7.872 -3.101 -1.082 ETKDGv3 1
21V CD 6.639 -2.579 -0.706 ETKDGv3 2
21V OE1 5.748 -3.340 -0.241 ETKDGv3 3
21V CG 6.389 -1.108 -0.809 ETKDGv3 4
21V CB 6.844 -0.398 0.475 ETKDGv3 5
21V CA 6.559 1.119 0.475 ETKDGv3 6
21V CT 7.410 1.835 -0.542 ETKDGv3 7
21V O1 8.509 2.343 -0.191 ETKDGv3 8
21V O2 7.017 1.902 -1.876 ETKDGv3 9
21V N 5.131 1.387 0.258 ETKDGv3 10
21V C 4.140 1.089 1.256 ETKDGv3 11
21V O 4.499 0.864 2.444 ETKDGv3 12
21V C11 2.697 1.060 0.921 ETKDGv3 13
21V C12 2.272 0.815 -0.334 ETKDGv3 14
21V C13 0.827 0.772 -0.641 ETKDGv3 15
21V C16 1.690 1.261 1.994 ETKDGv3 16
21V C15 0.382 1.224 1.714 ETKDGv3 17
21V C14 -0.081 0.981 0.328 ETKDGv3 18
21V C10 -1.555 0.899 0.033 ETKDGv3 19
21V C9 -2.054 -0.546 0.209 ETKDGv3 20
21V C6 -3.564 -0.757 -0.048 ETKDGv3 21
21V C7 -3.993 -0.406 -1.481 ETKDGv3 22
21V N8 -5.413 -0.702 -1.654 ETKDGv3 23
21V C5 -4.463 -0.011 0.958 ETKDGv3 24
21V C4A -5.929 -0.248 0.667 ETKDGv3 25
21V C4 -6.944 -0.073 1.728 ETKDGv3 26
21V O4 -6.603 0.241 2.899 ETKDGv3 27
21V C8A -6.354 -0.538 -0.579 ETKDGv3 28
21V N1 -7.757 -0.718 -0.832 ETKDGv3 29
21V C2 -8.721 -0.564 0.221 ETKDGv3 30
21V N3 -8.331 -0.259 1.422 ETKDGv3 31
21V NA2 -10.111 -0.743 -0.048 ETKDGv3 32
21V H1 8.063 -4.092 -1.003 ETKDGv3 33
21V H2 5.305 -0.935 -0.982 ETKDGv3 34
21V H3 6.948 -0.715 -1.683 ETKDGv3 35
21V H4 6.326 -0.857 1.346 ETKDGv3 36
21V H5 7.935 -0.562 0.621 ETKDGv3 37
21V H6 6.840 1.517 1.475 ETKDGv3 38
21V H7 7.595 2.367 -2.566 ETKDGv3 39
21V H8 4.822 1.832 -0.636 ETKDGv3 40
21V H9 2.969 0.615 -1.136 ETKDGv3 41
21V H10 0.512 0.561 -1.656 ETKDGv3 42
21V H11 2.008 1.445 3.013 ETKDGv3 43
21V H12 -0.340 1.371 2.508 ETKDGv3 44
21V H13 -2.093 1.581 0.722 ETKDGv3 45
21V H14 -1.743 1.252 -1.003 ETKDGv3 46
21V H15 -1.823 -0.884 1.243 ETKDGv3 47
21V H16 -1.486 -1.207 -0.483 ETKDGv3 48
21V H17 -3.752 -1.846 0.091 ETKDGv3 49
21V H18 -3.400 -0.997 -2.212 ETKDGv3 50
21V H19 -3.835 0.674 -1.685 ETKDGv3 51
21V H20 -4.221 -0.358 1.985 ETKDGv3 52
21V H21 -4.285 1.083 0.906 ETKDGv3 53
21V H24 -10.437 -0.988 -1.010 ETKDGv3 54
21V H25 -10.818 -0.632 0.713 ETKDGv3 55
21V H26 -5.759 -0.969 -2.602 ETKDGv3 56
21V H22 -8.081 -0.959 -1.795 ETKDGv3 57
#