data_25S
#
_chem_comp.id 25S
_chem_comp.name
(R)-N-(3-(1H-indol-3-yl)-1-oxo-1-(pyridin-4-ylamino)propan-2-yl)-4-(4-(3,4-difluorophenyl)piperazin-1-yl)-2-fluorobenzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H29 F3 N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-06-23
_chem_comp.pdbx_modified_date 2014-08-15
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 598.618
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 25S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4UQH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
25S O1 O1 O 0 1 N N N N N N -4.034 50.690 -5.454 4.120 -2.271 -0.472 O1 25S 1
25S C5 C5 C 0 1 N N N N N N -4.786 51.651 -5.728 4.835 -1.298 -0.359 C5 25S 2
25S N1 N1 N 0 1 N N N N N N -6.126 51.664 -5.564 6.174 -1.446 -0.324 N1 25S 3
25S C4 C4 C 0 1 Y N N N N N -6.828 50.561 -5.232 6.735 -2.724 -0.305 C4 25S 4
25S C3 C3 C 0 1 Y N N N N N -8.095 50.423 -5.803 7.964 -2.975 -0.914 C3 25S 5
25S C2 C2 C 0 1 Y N N N N N -8.851 49.258 -5.617 8.484 -4.252 -0.873 C2 25S 6
25S N N N 0 1 Y N N N N N -8.398 48.218 -4.873 7.833 -5.228 -0.269 N 25S 7
25S C1 C1 C 0 1 Y N N N N N -7.153 48.316 -4.327 6.668 -5.031 0.319 C1 25S 8
25S C C C 0 1 Y N N N N N -6.336 49.472 -4.496 6.083 -3.782 0.327 C 25S 9
25S C6 C6 C 0 1 N N R N N N -4.199 52.921 -6.351 4.226 0.077 -0.266 C6 25S 10
25S C24 C24 C 0 1 N N N N N N -4.097 52.852 -7.874 4.730 0.938 -1.427 C24 25S 11
25S C25 C25 C 0 1 Y N N N N N -5.454 52.596 -8.444 4.219 2.346 -1.266 C25 25S 12
25S C28 C28 C 0 1 Y N N N N N -6.046 51.296 -8.797 4.833 3.410 -0.468 C28 25S 13
25S C29 C29 C 0 1 Y N N N N N -5.564 50.014 -8.763 5.974 3.486 0.333 C29 25S 14
25S C30 C30 C 0 1 Y N N N N N -6.424 49.004 -9.201 6.283 4.658 0.964 C30 25S 15
25S C31 C31 C 0 1 Y N N N N N -7.721 49.272 -9.649 5.471 5.774 0.815 C31 25S 16
25S C32 C32 C 0 1 Y N N N N N -8.242 50.557 -9.691 4.341 5.721 0.030 C32 25S 17
25S C27 C27 C 0 1 Y N N N N N -7.413 51.599 -9.282 4.007 4.538 -0.622 C27 25S 18
25S N5 N5 N 0 1 Y N N N N N -7.563 52.941 -9.204 2.973 4.173 -1.454 N5 25S 19
25S C26 C26 C 0 1 Y N N N N N -6.445 53.547 -8.711 3.119 2.866 -1.833 C26 25S 20
25S N2 N2 N 0 1 N N N N N N -4.901 54.141 -6.016 2.767 -0.029 -0.334 N2 25S 21
25S C7 C7 C 0 1 N N N N N N -4.807 54.655 -4.805 2.056 -0.278 0.784 C7 25S 22
25S O O O 0 1 N N N N N N -4.206 54.047 -3.956 2.627 -0.415 1.849 O 25S 23
25S C8 C8 C 0 1 Y N N N N N -5.398 55.972 -4.428 0.588 -0.385 0.715 C8 25S 24
25S C23 C23 C 0 1 Y N N N N N -5.904 56.961 -5.399 -0.152 -0.644 1.876 C23 25S 25
25S F2 F2 F 0 1 N N N N N N -5.882 56.706 -6.701 0.477 -0.797 3.062 F2 25S 26
25S C22 C22 C 0 1 Y N N N N N -6.445 58.152 -4.959 -1.526 -0.743 1.804 C22 25S 27
25S C11 C11 C 0 1 Y N N N N N -6.506 58.429 -3.594 -2.170 -0.584 0.580 C11 25S 28
25S C10 C10 C 0 1 Y N N N N N -6.002 57.518 -2.670 -1.431 -0.328 -0.572 C10 25S 29
25S C9 C9 C 0 1 Y N N N N N -5.460 56.309 -3.080 -0.070 -0.223 -0.507 C9 25S 30
25S N3 N3 N 0 1 N N N N N N -7.025 59.626 -3.140 -3.555 -0.683 0.507 N3 25S 31
25S C21 C21 C 0 1 N N N N N N -8.244 60.129 -3.759 -4.025 -0.485 -0.871 C21 25S 32
25S C20 C20 C 0 1 N N N N N N -8.095 61.634 -3.672 -5.542 -0.680 -0.922 C20 25S 33
25S N4 N4 N 0 1 N N N N N N -8.336 61.816 -2.247 -6.187 0.271 -0.006 N4 25S 34
25S C13 C13 C 0 1 N N N N N N -7.557 61.053 -1.268 -5.717 0.072 1.372 C13 25S 35
25S C12 C12 C 0 1 N N N N N N -6.405 60.363 -2.032 -4.200 0.268 1.423 C12 25S 36
25S C14 C14 C 0 1 Y N N N N N -9.390 62.652 -1.879 -7.580 0.172 -0.079 C14 25S 37
25S C19 C19 C 0 1 Y N N N N N -10.613 62.277 -2.438 -8.378 0.989 0.711 C19 25S 38
25S C18 C18 C 0 1 Y N N N N N -11.771 62.987 -2.207 -9.754 0.889 0.638 C18 25S 39
25S C17 C17 C 0 1 Y N N N N N -11.701 64.088 -1.397 -10.339 -0.024 -0.222 C17 25S 40
25S F1 F1 F 0 1 N N N N N N -12.839 64.745 -1.194 -11.685 -0.119 -0.291 F1 25S 41
25S C16 C16 C 0 1 Y N N N N N -10.420 64.528 -0.783 -9.545 -0.841 -1.013 C16 25S 42
25S F F F 0 1 N N N N N N -10.421 65.635 0.005 -10.118 -1.731 -1.852 F 25S 43
25S C15 C15 C 0 1 Y N N N N N -9.267 63.779 -1.053 -8.167 -0.740 -0.946 C15 25S 44
25S H1 H1 H 0 1 N N N N N N -6.617 52.525 -5.694 6.748 -0.664 -0.311 H1 25S 45
25S H6 H6 H 0 1 N N N N N N -3.171 53.013 -5.970 4.513 0.538 0.679 H6 25S 46
25S H3 H3 H 0 1 N N N N N N -8.499 51.228 -6.398 8.501 -2.180 -1.411 H3 25S 47
25S H H H 0 1 N N N N N N -5.348 49.509 -4.062 5.132 -3.626 0.814 H 25S 48
25S H2 H2 H 0 1 N N N N N N -9.824 49.186 -6.080 9.435 -4.455 -1.342 H2 25S 49
25S HA HA H 0 1 N N N N N N -6.772 47.489 -3.746 6.168 -5.857 0.803 HA 25S 50
25S H241 H241 H 0 0 N N N N N N -3.709 53.806 -8.261 5.820 0.944 -1.429 H241 25S 51
25S H242 H242 H 0 0 N N N N N N -3.417 52.036 -8.161 4.367 0.525 -2.369 H242 25S 52
25S HB HB H 0 1 N N N N N N -5.461 54.598 -6.707 2.312 0.080 -1.184 HB 25S 53
25S H26 H26 H 0 1 N N N N N N -6.340 54.610 -8.550 2.447 2.332 -2.488 H26 25S 54
25S H29 H29 H 0 1 N N N N N N -4.566 49.794 -8.414 6.610 2.622 0.454 H29 25S 55
25S H30 H30 H 0 1 N N N N N N -6.075 47.982 -9.193 7.166 4.716 1.584 H30 25S 56
25S H31 H31 H 0 1 N N N N N N -8.340 48.449 -9.974 5.728 6.694 1.320 H31 25S 57
25S H32 H32 H 0 1 N N N N N N -9.251 50.742 -10.028 3.716 6.595 -0.080 H32 25S 58
25S H5 H5 H 0 1 N N N N N N -8.393 53.429 -9.475 2.251 4.757 -1.734 H5 25S 59
25S H9 H9 H 0 1 N N N N N N -5.080 55.619 -2.341 0.498 -0.019 -1.403 H9 25S 60
25S H22 H22 H 0 1 N N N N N N -6.821 58.870 -5.673 -2.102 -0.942 2.695 H22 25S 61
25S H10 H10 H 0 1 N N N N N N -6.034 57.756 -1.617 -1.935 -0.206 -1.519 H10 25S 62
25S H211 H211 H 0 0 N N N N N N -8.316 59.802 -4.807 -3.777 0.525 -1.197 H211 25S 63
25S H212 H212 H 0 0 N N N N N N -9.133 59.790 -3.207 -3.543 -1.209 -1.527 H212 25S 64
25S H121 H121 H 0 0 N N N N N N -5.869 59.670 -1.367 -3.845 0.092 2.439 H121 25S 65
25S H122 H122 H 0 0 N N N N N N -5.703 61.115 -2.421 -3.954 1.286 1.123 H122 25S 66
25S H201 H201 H 0 0 N N N N N N -7.087 61.964 -3.963 -5.898 -0.504 -1.937 H201 25S 67
25S H202 H202 H 0 0 N N N N N N -8.844 62.157 -4.285 -5.788 -1.698 -0.621 H202 25S 68
25S H131 H131 H 0 0 N N N N N N -7.149 61.729 -0.503 -6.199 0.797 2.029 H131 25S 69
25S H132 H132 H 0 0 N N N N N N -8.195 60.297 -0.787 -5.965 -0.937 1.699 H132 25S 70
25S H19 H19 H 0 1 N N N N N N -10.653 61.403 -3.071 -7.923 1.701 1.383 H19 25S 71
25S H15 H15 H 0 1 N N N N N N -8.311 64.061 -0.637 -7.548 -1.373 -1.565 H15 25S 72
25S H18 H18 H 0 1 N N N N N N -12.707 62.683 -2.652 -10.374 1.525 1.253 H18 25S 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
25S O1 C5 DOUB N N 1
25S C5 N1 SING N N 2
25S C5 C6 SING N N 3
25S N1 C4 SING N N 4
25S C4 C3 DOUB Y N 5
25S C4 C SING Y N 6
25S C3 C2 SING Y N 7
25S C2 N DOUB Y N 8
25S N C1 SING Y N 9
25S C1 C DOUB Y N 10
25S C6 C24 SING N N 11
25S C6 N2 SING N N 12
25S C24 C25 SING N N 13
25S C25 C28 SING Y N 14
25S C25 C26 DOUB Y N 15
25S C28 C29 SING Y N 16
25S C28 C27 DOUB Y N 17
25S C29 C30 DOUB Y N 18
25S C30 C31 SING Y N 19
25S C31 C32 DOUB Y N 20
25S C32 C27 SING Y N 21
25S C27 N5 SING Y N 22
25S N5 C26 SING Y N 23
25S N2 C7 SING N N 24
25S C7 O DOUB N N 25
25S C7 C8 SING N N 26
25S C8 C23 SING Y N 27
25S C8 C9 DOUB Y N 28
25S C23 F2 SING N N 29
25S C23 C22 DOUB Y N 30
25S C22 C11 SING Y N 31
25S C11 C10 DOUB Y N 32
25S C11 N3 SING N N 33
25S C10 C9 SING Y N 34
25S N3 C21 SING N N 35
25S N3 C12 SING N N 36
25S C21 C20 SING N N 37
25S C20 N4 SING N N 38
25S N4 C13 SING N N 39
25S N4 C14 SING N N 40
25S C13 C12 SING N N 41
25S C14 C19 SING Y N 42
25S C14 C15 DOUB Y N 43
25S C19 C18 DOUB Y N 44
25S C18 C17 SING Y N 45
25S C17 F1 SING N N 46
25S C17 C16 DOUB Y N 47
25S C16 F SING N N 48
25S C16 C15 SING Y N 49
25S N1 H1 SING N N 50
25S C6 H6 SING N N 51
25S C3 H3 SING N N 52
25S C H SING N N 53
25S C2 H2 SING N N 54
25S C1 HA SING N N 55
25S C24 H241 SING N N 56
25S C24 H242 SING N N 57
25S N2 HB SING N N 58
25S C26 H26 SING N N 59
25S C29 H29 SING N N 60
25S C30 H30 SING N N 61
25S C31 H31 SING N N 62
25S C32 H32 SING N N 63
25S N5 H5 SING N N 64
25S C9 H9 SING N N 65
25S C22 H22 SING N N 66
25S C10 H10 SING N N 67
25S C21 H211 SING N N 68
25S C21 H212 SING N N 69
25S C12 H121 SING N N 70
25S C12 H122 SING N N 71
25S C20 H201 SING N N 72
25S C20 H202 SING N N 73
25S C13 H131 SING N N 74
25S C13 H132 SING N N 75
25S C19 H19 SING N N 76
25S C15 H15 SING N N 77
25S C18 H18 SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
25S SMILES ACDLabs 12.01 O=C(Nc1ccncc1)C(NC(=O)c4ccc(N3CCN(c2cc(F)c(F)cc2)CC3)cc4F)Cc6c5ccccc5nc6
25S InChI InChI 1.03 InChI=1S/C33H29F3N6O2/c34-27-8-6-24(19-29(27)36)42-15-13-41(14-16-42)23-5-7-26(28(35)18-23)32(43)40-31(33(44)39-22-9-11-37-12-10-22)17-21-20-38-30-4-2-1-3-25(21)30/h1-12,18-20,31,38H,13-17H2,(H,40,43)(H,37,39,44)/t31-/m1/s1
25S InChIKey InChI 1.03 UJJHTUJDTNONGY-WJOKGBTCSA-N
25S SMILES_CANONICAL CACTVS 3.385 Fc1ccc(cc1F)N2CCN(CC2)c3ccc(C(=O)N[C@H](Cc4c[nH]c5ccccc45)C(=O)Nc6ccncc6)c(F)c3
25S SMILES CACTVS 3.385 Fc1ccc(cc1F)N2CCN(CC2)c3ccc(C(=O)N[CH](Cc4c[nH]c5ccccc45)C(=O)Nc6ccncc6)c(F)c3
25S SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)c(c[nH]2)C[C@H](C(=O)Nc3ccncc3)NC(=O)c4ccc(cc4F)N5CCN(CC5)c6ccc(c(c6)F)F
25S SMILES "OpenEye OEToolkits" 1.7.6 c1ccc2c(c1)c(c[nH]2)CC(C(=O)Nc3ccncc3)NC(=O)c4ccc(cc4F)N5CCN(CC5)c6ccc(c(c6)F)F
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
25S "SYSTEMATIC NAME" ACDLabs 12.01 Nalpha-{4-[4-(3,4-difluorophenyl)piperazin-1-yl]-2-fluorobenzoyl}-N-pyridin-4-yl-D-tryptophanamide
25S "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 4-[4-[3,4-bis(fluoranyl)phenyl]piperazin-1-yl]-2-fluoranyl-N-[(2R)-3-(1H-indol-3-yl)-1-oxidanylidene-1-(pyridin-4-ylamino)propan-2-yl]benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
25S 'Create component' 2014-06-23 EBI
25S 'Initial release' 2014-08-20 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
25S O1 O 9.487 -8.426 1
25S C5 C 9.953 -7.000 2
25S N1 N 11.421 -6.691 3
25S C4 C 12.422 -7.807 4
25S C3 C 13.890 -7.498 5
25S C2 C 14.892 -8.614 6
25S N N 14.426 -10.040 7
25S C1 C 12.958 -10.349 8
25S C C 11.957 -9.233 9
25S C6 C 8.951 -5.883 10
25S C24 C 7.483 -6.193 11
25S C25 C 7.018 -7.619 12
25S C28 C 5.598 -8.075 13
25S C29 C 4.299 -7.325 14
25S C30 C 3.000 -8.075 15
25S C31 C 3.000 -9.575 16
25S C32 C 4.299 -10.325 17
25S C27 C 5.598 -9.575 18
25S N5 N 7.018 -10.033 19
25S C26 C 7.893 -8.825 20
25S N2 N 9.417 -4.457 21
25S C7 C 8.415 -3.341 22
25S O O 6.948 -3.650 23
25S C8 C 8.881 -1.915 24
25S C23 C 7.880 -0.799 25
25S F2 F 6.412 -1.108 26
25S C22 C 8.345 0.627 27
25S C11 C 9.813 0.936 28
25S C10 C 10.815 -0.180 29
25S C9 C 10.349 -1.606 30
25S N3 N 10.279 2.362 31
25S C21 C 9.278 3.478 32
25S C20 C 9.744 4.904 33
25S N4 N 11.211 5.213 34
25S C13 C 12.213 4.097 35
25S C12 C 11.747 2.671 36
25S C14 C 11.677 6.639 37
25S C19 C 13.145 6.949 38
25S C18 C 13.611 8.374 39
25S C17 C 12.609 9.491 40
25S F1 F 13.075 10.917 41
25S C16 C 11.142 9.181 42
25S F F 10.140 10.298 43
25S C15 C 10.675 7.756 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
25S O1 C5 DOUBLE NONE 1
25S C5 N1 SINGLE NONE 2
25S C5 C6 SINGLE NONE 3
25S N1 C4 SINGLE NONE 4
25S C4 C3 DOUBLE NONE 5
25S C4 C SINGLE NONE 6
25S C3 C2 SINGLE NONE 7
25S C2 N DOUBLE NONE 8
25S N C1 SINGLE NONE 9
25S C1 C DOUBLE NONE 10
25S C6 C24 SINGLE BEGINWEDGE 11
25S C6 N2 SINGLE NONE 12
25S C24 C25 SINGLE NONE 13
25S C25 C28 SINGLE NONE 14
25S C25 C26 DOUBLE NONE 15
25S C28 C29 DOUBLE NONE 16
25S C28 C27 SINGLE NONE 17
25S C29 C30 SINGLE NONE 18
25S C30 C31 DOUBLE NONE 19
25S C31 C32 SINGLE NONE 20
25S C32 C27 DOUBLE NONE 21
25S C27 N5 SINGLE NONE 22
25S N5 C26 SINGLE NONE 23
25S N2 C7 SINGLE NONE 24
25S C7 O DOUBLE NONE 25
25S C7 C8 SINGLE NONE 26
25S C8 C23 DOUBLE NONE 27
25S C8 C9 SINGLE NONE 28
25S C23 F2 SINGLE NONE 29
25S C23 C22 SINGLE NONE 30
25S C22 C11 DOUBLE NONE 31
25S C11 C10 SINGLE NONE 32
25S C11 N3 SINGLE NONE 33
25S C10 C9 DOUBLE NONE 34
25S N3 C21 SINGLE NONE 35
25S N3 C12 SINGLE NONE 36
25S C21 C20 SINGLE NONE 37
25S C20 N4 SINGLE NONE 38
25S N4 C13 SINGLE NONE 39
25S N4 C14 SINGLE NONE 40
25S C13 C12 SINGLE NONE 41
25S C14 C19 DOUBLE NONE 42
25S C14 C15 SINGLE NONE 43
25S C19 C18 SINGLE NONE 44
25S C18 C17 DOUBLE NONE 45
25S C17 F1 SINGLE NONE 46
25S C17 C16 SINGLE NONE 47
25S C16 F SINGLE NONE 48
25S C16 C15 DOUBLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
25S MurckoScaffold S1 scaffold 'O=C(N[C@H](Cc1c[nH]c2ccccc12)C(=O)Nc1ccncc1)c1ccc(N2CCN(c3ccccc3)CC2)cc1' InChI=1S/C33H32N6O2/c40-32(24-10-12-28(13-11-24)39-20-18-38(19-21-39)27-6-2-1-3-7-27)37-31(33(41)36-26-14-16-34-17-15-26)22-25-23-35-30-9-5-4-8-29(25)30/h1-17,23,31,35H,18-22H2,(H,37,40)(H,34,36,41)/t31-/m1/s1 UZWYPDSNPWYQKS-WJOKGBTCSA-N
25S amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
25S indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
25S peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
25S phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
25S piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
25S pyridine F6 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
25S pyrrole F7 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
25S Z2856434894 F8 fragment CC(C)NCc1ccc(N(C)C)cc1 InChI=1S/C12H20N2/c1-10(2)13-9-11-5-7-12(8-6-11)14(3)4/h5-8,10,13H,9H2,1-4H3 NZXPKDJRJFKEIC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
25S O1 S1 1
25S C5 S1 1
25S N1 S1 1
25S C4 S1 1
25S C3 S1 1
25S C2 S1 1
25S N S1 1
25S C1 S1 1
25S C S1 1
25S C6 S1 1
25S C24 S1 1
25S C25 S1 1
25S C28 S1 1
25S C29 S1 1
25S C30 S1 1
25S C31 S1 1
25S C32 S1 1
25S C27 S1 1
25S N5 S1 1
25S C26 S1 1
25S N2 S1 1
25S C7 S1 1
25S O S1 1
25S C8 S1 1
25S C23 S1 1
25S C22 S1 1
25S C11 S1 1
25S C10 S1 1
25S C9 S1 1
25S N3 S1 1
25S C21 S1 1
25S C20 S1 1
25S N4 S1 1
25S C13 S1 1
25S C12 S1 1
25S C14 S1 1
25S C19 S1 1
25S C18 S1 1
25S C17 S1 1
25S C16 S1 1
25S C15 S1 1
25S N1 F1 1
25S C5 F1 1
25S O1 F1 1
25S C6 F1 1
25S N2 F1 2
25S C7 F1 2
25S O F1 2
25S C8 F1 2
25S C27 F2 1
25S C28 F2 1
25S C25 F2 1
25S C26 F2 1
25S N5 F2 1
25S C29 F2 1
25S C30 F2 1
25S C31 F2 1
25S C32 F2 1
25S O1 F3 1
25S C5 F3 1
25S C6 F3 1
25S N2 F3 1
25S C28 F4 1
25S C29 F4 1
25S C30 F4 1
25S C31 F4 1
25S C32 F4 1
25S C27 F4 1
25S C8 F4 2
25S C23 F4 2
25S C22 F4 2
25S C11 F4 2
25S C10 F4 2
25S C9 F4 2
25S C14 F4 3
25S C19 F4 3
25S C18 F4 3
25S C17 F4 3
25S C16 F4 3
25S C15 F4 3
25S N3 F5 1
25S C21 F5 1
25S C20 F5 1
25S N4 F5 1
25S C13 F5 1
25S C12 F5 1
25S C2 F6 1
25S C3 F6 1
25S C4 F6 1
25S C F6 1
25S C1 F6 1
25S N F6 1
25S C27 F7 1
25S C28 F7 1
25S C25 F7 1
25S C26 F7 1
25S N5 F7 1
25S C5 F8 1
25S C6 F8 1
25S C24 F8 1
25S N2 F8 1
25S C7 F8 1
25S C8 F8 1
25S C23 F8 1
25S C22 F8 1
25S C11 F8 1
25S C10 F8 1
25S C9 F8 1
25S N3 F8 1
25S C21 F8 1
25S C12 F8 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 25S
_pdbe_chem_comp_rdkit_properties.exactmw 598.230
_pdbe_chem_comp_rdkit_properties.amw 598.629
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 73
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.182
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 291.984
_pdbe_chem_comp_rdkit_properties.tpsa 93.360
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.607
_pdbe_chem_comp_rdkit_properties.CrippenMR 158.098
_pdbe_chem_comp_rdkit_properties.chi0v 21.134
_pdbe_chem_comp_rdkit_properties.chi1v 11.606
_pdbe_chem_comp_rdkit_properties.chi2v 5.204
_pdbe_chem_comp_rdkit_properties.chi3v 5.204
_pdbe_chem_comp_rdkit_properties.chi4v 3.249
_pdbe_chem_comp_rdkit_properties.chi0n 50.134
_pdbe_chem_comp_rdkit_properties.chi1n 25.947
_pdbe_chem_comp_rdkit_properties.chi2n 5.204
_pdbe_chem_comp_rdkit_properties.chi3n 5.204
_pdbe_chem_comp_rdkit_properties.chi4n 3.249
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -5.320
_pdbe_chem_comp_rdkit_properties.kappa1 10.396
_pdbe_chem_comp_rdkit_properties.kappa2 12.502
_pdbe_chem_comp_rdkit_properties.kappa3 6.215
_pdbe_chem_comp_rdkit_properties.Phi 2.954
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
25S UniChem ChEMBL CHEMBL3337540
25S UniChem PDBe 25S
25S UniChem ZINC ZINC000098208094
25S UniChem SureChEMBL SCHEMBL16609022
25S UniChem PubChem 76936801
25S UniChem Nikkaji J3.330.352A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
25S O1 -6.451 -1.670 -0.129 ETKDGv3 1
25S C5 -5.355 -1.969 -0.678 ETKDGv3 2
25S N1 -4.766 -3.259 -0.445 ETKDGv3 3
25S C4 -5.071 -4.095 0.684 ETKDGv3 4
25S C3 -5.407 -3.578 1.880 ETKDGv3 5
25S C2 -5.673 -4.483 3.015 ETKDGv3 6
25S N -5.564 -5.771 2.864 ETKDGv3 7
25S C1 -5.184 -6.351 1.605 ETKDGv3 8
25S C -4.939 -5.564 0.550 ETKDGv3 9
25S C6 -4.725 -1.030 -1.684 ETKDGv3 10
25S C24 -5.298 0.409 -1.665 ETKDGv3 11
25S C25 -4.851 1.226 -0.483 ETKDGv3 12
25S C28 -3.650 2.057 -0.407 ETKDGv3 13
25S C29 -2.684 2.326 -1.289 ETKDGv3 14
25S C30 -1.555 3.183 -0.833 ETKDGv3 15
25S C31 -1.525 3.657 0.433 ETKDGv3 16
25S C32 -2.620 3.330 1.386 ETKDGv3 17
25S C27 -3.618 2.566 0.938 ETKDGv3 18
25S N5 -4.745 2.089 1.653 ETKDGv3 19
25S C26 -5.454 1.269 0.715 ETKDGv3 20
25S N2 -3.257 -1.017 -1.590 ETKDGv3 21
25S C7 -2.511 -0.952 -0.356 ETKDGv3 22
25S O -3.108 -1.020 0.752 ETKDGv3 23
25S C8 -1.051 -0.721 -0.363 ETKDGv3 24
25S C23 -0.242 -1.279 -1.286 ETKDGv3 25
25S F2 -0.721 -2.150 -2.209 ETKDGv3 26
25S C22 1.208 -0.989 -1.275 ETKDGv3 27
25S C11 1.737 -0.178 -0.342 ETKDGv3 28
25S C10 0.850 0.418 0.684 ETKDGv3 29
25S C9 -0.461 0.155 0.679 ETKDGv3 30
25S N3 3.147 0.114 -0.330 ETKDGv3 31
25S C21 3.935 -0.111 0.887 ETKDGv3 32
25S C20 4.901 1.052 1.100 ETKDGv3 33
25S N4 5.639 1.321 -0.139 ETKDGv3 34
25S C13 4.864 1.536 -1.368 ETKDGv3 35
25S C12 3.873 0.388 -1.577 ETKDGv3 36
25S C14 7.043 1.640 -0.086 ETKDGv3 37
25S C19 7.519 2.763 -0.655 ETKDGv3 38
25S C18 8.961 3.081 -0.587 ETKDGv3 39
25S C17 9.803 2.252 0.042 ETKDGv3 40
25S F1 11.125 2.545 0.104 ETKDGv3 41
25S C16 9.291 1.015 0.667 ETKDGv3 42
25S F 10.146 0.171 1.295 ETKDGv3 43
25S C15 7.985 0.724 0.606 ETKDGv3 44
25S H1 -4.114 -3.635 -1.170 ETKDGv3 45
25S H6 -4.989 -1.451 -2.680 ETKDGv3 46
25S H3 -5.458 -2.509 2.039 ETKDGv3 47
25S H -4.651 -6.003 -0.397 ETKDGv3 48
25S H2 -5.955 -4.076 3.977 ETKDGv3 49
25S HA -5.095 -7.425 1.514 ETKDGv3 50
25S H241 -6.408 0.378 -1.700 ETKDGv3 51
25S H242 -4.975 0.929 -2.592 ETKDGv3 52
25S HB -2.746 -0.832 -2.482 ETKDGv3 53
25S H26 -6.363 0.739 0.963 ETKDGv3 54
25S H29 -2.705 1.920 -2.292 ETKDGv3 55
25S H30 -0.751 3.417 -1.519 ETKDGv3 56
25S H31 -0.697 4.273 0.759 ETKDGv3 57
25S H32 -2.602 3.690 2.406 ETKDGv3 58
25S H5 -4.986 2.262 2.654 ETKDGv3 59
25S H9 -1.095 0.609 1.431 ETKDGv3 60
25S H22 1.839 -1.454 -2.022 ETKDGv3 61
25S H10 1.258 1.083 1.434 ETKDGv3 62
25S H211 4.512 -1.055 0.777 ETKDGv3 63
25S H212 3.283 -0.214 1.781 ETKDGv3 64
25S H121 4.421 -0.527 -1.890 ETKDGv3 65
25S H122 3.168 0.672 -2.389 ETKDGv3 66
25S H201 4.328 1.961 1.386 ETKDGv3 67
25S H202 5.589 0.807 1.938 ETKDGv3 68
25S H131 5.535 1.589 -2.253 ETKDGv3 69
25S H132 4.311 2.497 -1.288 ETKDGv3 70
25S H19 6.854 3.456 -1.154 ETKDGv3 71
25S H15 7.619 -0.192 1.053 ETKDGv3 72
25S H18 9.332 3.989 -1.046 ETKDGv3 73
#