data_2A5
#
_chem_comp.id 2A5
_chem_comp.name "2'-deoxy-2'-(2-hydroxyethyl)adenosine 5'-(trihydrogen diphosphate)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H19 N5 O10 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-05-02
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 455.254
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2A5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2ZNG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2A5 O2A O2A O 0 1 N N N N N N 26.744 49.364 16.273 -4.548 -2.084 0.307 O2A 2A5 1
2A5 PA PA P 0 1 N N S N N N 25.663 50.249 15.689 -3.772 -0.673 0.326 PA 2A5 2
2A5 O1A O1A O 0 1 N N N N N N 25.396 50.249 14.192 -3.649 -0.197 1.722 O1A 2A5 3
2A5 O3A O3A O 0 1 N N N N N N 25.813 51.774 16.242 -4.599 0.405 -0.537 O3A 2A5 4
2A5 PB PB P 0 1 N N N N N N 27.086 52.796 16.207 -5.890 1.321 -0.243 PB 2A5 5
2A5 O2B O2B O 0 1 N N N N N N 26.497 54.029 15.537 -5.998 2.473 -1.363 O2B 2A5 6
2A5 O1B O1B O 0 1 N N N N N N 27.409 52.963 17.675 -7.216 0.407 -0.284 O1B 2A5 7
2A5 O3B O3B O 0 1 N N N N N N 28.204 52.204 15.365 -5.760 1.942 1.093 O3B 2A5 8
2A5 "O5'" "O5'" O 0 1 N N N N N N 24.260 49.824 16.329 -2.305 -0.859 -0.310 "O5'" 2A5 9
2A5 "C5'" "C5'" C 0 1 N N N N N N 24.231 49.612 17.729 -1.294 -1.672 0.290 "C5'" 2A5 10
2A5 "C4'" "C4'" C 0 1 N N R N N N 22.901 50.065 18.308 -0.028 -1.628 -0.568 "C4'" 2A5 11
2A5 "O4'" "O4'" O 0 1 N N N N N N 22.437 51.308 17.770 0.536 -0.306 -0.539 "O4'" 2A5 12
2A5 "C1'" "C1'" C 0 1 N N R N N N 20.993 51.317 17.746 1.970 -0.458 -0.605 "C1'" 2A5 13
2A5 "C2'" "C2'" C 0 1 N N R N N N 20.521 49.872 17.942 2.246 -1.680 0.307 "C2'" 2A5 14
2A5 C01 C01 C 0 1 N N N N N N 19.595 49.835 19.147 3.553 -2.371 -0.087 C01 2A5 15
2A5 C02 C02 C 0 1 N N N N N N 18.851 48.536 19.394 3.857 -3.493 0.908 C02 2A5 16
2A5 O01 O01 O 0 1 N N N N N N 17.534 48.754 19.920 5.078 -4.138 0.540 O01 2A5 17
2A5 "C3'" "C3'" C 0 1 N N S N N N 21.813 49.046 18.045 1.028 -2.592 0.005 "C3'" 2A5 18
2A5 "O3'" "O3'" O 0 1 N N N N N N 21.898 48.060 19.084 1.375 -3.589 -0.957 "O3'" 2A5 19
2A5 N9 N9 N 0 1 Y N N N N N 20.525 51.935 16.468 2.640 0.736 -0.084 N9 2A5 20
2A5 C8 C8 C 0 1 Y N N N N N 20.954 51.581 15.235 2.113 1.640 0.790 C8 2A5 21
2A5 N7 N7 N 0 1 Y N N N N N 20.369 52.340 14.278 2.982 2.576 1.039 N7 2A5 22
2A5 C5 C5 C 0 1 Y N N N N N 19.548 53.207 14.901 4.119 2.333 0.344 C5 2A5 23
2A5 C4 C4 C 0 1 Y N N N N N 19.654 52.947 16.346 3.915 1.147 -0.381 C4 2A5 24
2A5 C6 C6 C 0 1 Y N N N N N 18.622 54.280 14.478 5.359 2.981 0.221 C6 2A5 25
2A5 N6 N6 N 0 1 N N N N N N 18.487 54.557 13.160 5.620 4.150 0.915 N6 2A5 26
2A5 N1 N1 N 0 1 Y N N N N N 17.934 54.968 15.435 6.277 2.445 -0.577 N1 2A5 27
2A5 C2 C2 C 0 1 Y N N N N N 18.081 54.684 16.744 6.037 1.330 -1.243 C2 2A5 28
2A5 N3 N3 N 0 1 Y N N N N N 18.907 53.708 17.189 4.893 0.686 -1.153 N3 2A5 29
2A5 HO2A HO2A H 0 0 N N N N N N 27.396 49.179 15.607 -4.665 -2.456 -0.578 HO2A 2A5 30
2A5 HO2B HO2B H 0 0 N N N N N N 26.374 54.713 16.184 -6.755 3.063 -1.248 HO2B 2A5 31
2A5 HO1B HO1B H 0 0 N N N N N N 28.351 52.998 17.790 -7.365 -0.032 -1.132 HO1B 2A5 32
2A5 "H5'" "H5'" H 0 1 N N N N N N 24.367 48.540 17.934 -1.070 -1.296 1.288 "H5'" 2A5 33
2A5 "H5'A" "H5'A" H 0 0 N N N N N N 25.039 50.195 18.195 -1.649 -2.700 0.361 "H5'A" 2A5 34
2A5 "H4'" "H4'" H 0 1 N N N N N N 23.095 50.184 19.384 -0.266 -1.907 -1.594 "H4'" 2A5 35
2A5 "H1'" "H1'" H 0 1 N N N N N N 20.562 51.926 18.554 2.288 -0.662 -1.628 "H1'" 2A5 36
2A5 "H2'" "H2'" H 0 1 N N N N N N 19.919 49.447 17.125 2.264 -1.387 1.356 "H2'" 2A5 37
2A5 H01 H01 H 0 1 N N N N N N 20.212 50.029 20.036 3.455 -2.790 -1.089 H01 2A5 38
2A5 H01A H01A H 0 0 N N N N N N 18.817 50.585 18.942 4.366 -1.645 -0.075 H01A 2A5 39
2A5 H02 H02 H 0 1 N N N N N N 18.761 47.997 18.439 3.955 -3.074 1.909 H02 2A5 40
2A5 H02A H02A H 0 0 N N N N N N 19.420 47.957 20.136 3.045 -4.219 0.896 H02A 2A5 41
2A5 HO01 HO01 H 0 0 N N N N N N 17.575 48.802 20.868 5.333 -4.862 1.128 HO01 2A5 42
2A5 "H3'" "H3'" H 0 1 N N N N N N 21.883 48.461 17.116 0.663 -3.056 0.922 "H3'" 2A5 43
2A5 "HO3'" "HO3'" H 0 0 N N N N N N 21.917 47.193 18.697 0.650 -4.188 -1.183 "HO3'" 2A5 44
2A5 H8 H8 H 0 1 N N N N N N 21.669 50.796 15.039 1.120 1.588 1.212 H8 2A5 45
2A5 HN6 HN6 H 0 1 N N N N N N 18.454 55.548 13.029 4.942 4.531 1.495 HN6 2A5 46
2A5 HN6A HN6A H 0 0 N N N N N N 19.266 54.181 12.659 6.480 4.587 0.822 HN6A 2A5 47
2A5 H2 H2 H 0 1 N N N N N N 17.518 55.257 17.466 6.811 0.929 -1.881 H2 2A5 48
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2A5 PA O2A SING N N 1
2A5 O2A HO2A SING N N 2
2A5 O1A PA DOUB N N 3
2A5 PA O3A SING N N 4
2A5 PA "O5'" SING N N 5
2A5 PB O3A SING N N 6
2A5 O3B PB DOUB N N 7
2A5 O2B PB SING N N 8
2A5 PB O1B SING N N 9
2A5 O2B HO2B SING N N 10
2A5 O1B HO1B SING N N 11
2A5 "O5'" "C5'" SING N N 12
2A5 "C5'" "C4'" SING N N 13
2A5 "C5'" "H5'" SING N N 14
2A5 "C5'" "H5'A" SING N N 15
2A5 "O4'" "C4'" SING N N 16
2A5 "C3'" "C4'" SING N N 17
2A5 "C4'" "H4'" SING N N 18
2A5 "C1'" "O4'" SING N N 19
2A5 N9 "C1'" SING N N 20
2A5 "C1'" "C2'" SING N N 21
2A5 "C1'" "H1'" SING N N 22
2A5 "C2'" "C3'" SING N N 23
2A5 "C2'" C01 SING N N 24
2A5 "C2'" "H2'" SING N N 25
2A5 C01 C02 SING N N 26
2A5 C01 H01 SING N N 27
2A5 C01 H01A SING N N 28
2A5 C02 O01 SING N N 29
2A5 C02 H02 SING N N 30
2A5 C02 H02A SING N N 31
2A5 O01 HO01 SING N N 32
2A5 "C3'" "O3'" SING N N 33
2A5 "C3'" "H3'" SING N N 34
2A5 "O3'" "HO3'" SING N N 35
2A5 C8 N9 SING Y N 36
2A5 C4 N9 SING Y N 37
2A5 N7 C8 DOUB Y N 38
2A5 C8 H8 SING N N 39
2A5 N7 C5 SING Y N 40
2A5 C6 C5 DOUB Y N 41
2A5 C5 C4 SING Y N 42
2A5 C4 N3 DOUB Y N 43
2A5 N6 C6 SING N N 44
2A5 C6 N1 SING Y N 45
2A5 N6 HN6 SING N N 46
2A5 N6 HN6A SING N N 47
2A5 N1 C2 DOUB Y N 48
2A5 C2 N3 SING Y N 49
2A5 C2 H2 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2A5 SMILES ACDLabs 10.04 O=P(O)(OP(=O)(O)O)OCC3OC(n2cnc1c(ncnc12)N)C(C3O)CCO
2A5 SMILES_CANONICAL CACTVS 3.341 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3CCO
2A5 SMILES CACTVS 3.341 Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3CCO
2A5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)CCO)N
2A5 SMILES "OpenEye OEToolkits" 1.5.0 c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)CCO)N
2A5 InChI InChI 1.03 InChI=1S/C12H19N5O10P2/c13-10-8-11(15-4-14-10)17(5-16-8)12-6(1-2-18)9(19)7(26-12)3-25-29(23,24)27-28(20,21)22/h4-7,9,12,18-19H,1-3H2,(H,23,24)(H2,13,14,15)(H2,20,21,22)/t6-,7-,9+,12-/m1/s1
2A5 InChIKey InChI 1.03 RHTGRZKDKXTTPI-PNFUHCLESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2A5 "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-2'-(2-hydroxyethyl)adenosine 5'-(trihydrogen diphosphate)"
2A5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3-hydroxy-4-(2-hydroxyethyl)oxolan-2-yl]methyl phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2A5 'Create component' 2008-05-02 PDBJ
2A5 'Modify aromatic_flag' 2011-06-04 RCSB
2A5 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2A5 O2A O 8.998 4.960 1
2A5 PA P 7.571 4.499 2
2A5 O1A O 6.144 4.038 3
2A5 O3A O 7.110 5.926 4
2A5 PB P 5.643 6.241 5
2A5 O2B O 5.958 7.708 6
2A5 O1B O 5.329 4.774 7
2A5 O3B O 4.177 6.556 8
2A5 "O5'" O 8.032 3.072 9
2A5 "C5'" C 7.027 1.959 10
2A5 "C4'" C 7.487 0.531 11
2A5 "O4'" O 6.604 -0.680 12
2A5 "C1'" C 7.483 -1.896 13
2A5 "C2'" C 8.911 -1.435 14
2A5 C01 C 10.123 -2.318 15
2A5 C02 C 11.494 -1.711 16
2A5 O01 O 12.706 -2.594 17
2A5 "C3'" C 8.913 0.065 18
2A5 "O3'" O 10.129 0.945 19
2A5 N9 N 7.018 -3.321 20
2A5 C8 C 7.893 -4.529 21
2A5 N7 N 7.018 -5.736 22
2A5 C5 C 5.598 -5.279 23
2A5 C4 C 5.598 -3.779 24
2A5 C6 C 4.299 -6.029 25
2A5 N6 N 4.299 -7.529 26
2A5 N1 N 3.000 -5.279 27
2A5 C2 C 3.000 -3.779 28
2A5 N3 N 4.299 -3.029 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2A5 PA O2A SINGLE BEGINDASH 1
2A5 O1A PA DOUBLE NONE 2
2A5 PA O3A SINGLE NONE 3
2A5 PA "O5'" SINGLE NONE 4
2A5 PB O3A SINGLE NONE 5
2A5 O3B PB DOUBLE NONE 6
2A5 O2B PB SINGLE NONE 7
2A5 PB O1B SINGLE NONE 8
2A5 "O5'" "C5'" SINGLE NONE 9
2A5 "C4'" "C5'" SINGLE BEGINDASH 10
2A5 "O4'" "C4'" SINGLE NONE 11
2A5 "C3'" "C4'" SINGLE NONE 12
2A5 "C1'" "O4'" SINGLE NONE 13
2A5 "C1'" N9 SINGLE BEGINDASH 14
2A5 "C1'" "C2'" SINGLE NONE 15
2A5 "C2'" "C3'" SINGLE NONE 16
2A5 "C2'" C01 SINGLE BEGINWEDGE 17
2A5 C01 C02 SINGLE NONE 18
2A5 C02 O01 SINGLE NONE 19
2A5 "C3'" "O3'" SINGLE BEGINWEDGE 20
2A5 C8 N9 SINGLE NONE 21
2A5 C4 N9 SINGLE NONE 22
2A5 N7 C8 DOUBLE NONE 23
2A5 N7 C5 SINGLE NONE 24
2A5 C6 C5 SINGLE NONE 25
2A5 C5 C4 DOUBLE NONE 26
2A5 C4 N3 SINGLE NONE 27
2A5 N6 C6 SINGLE NONE 28
2A5 C6 N1 DOUBLE NONE 29
2A5 N1 C2 SINGLE NONE 30
2A5 C2 N3 DOUBLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2A5 MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
2A5 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
2A5 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
2A5 phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
2A5 purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
2A5 pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2A5 "C4'" S1 1
2A5 "O4'" S1 1
2A5 "C1'" S1 1
2A5 "C2'" S1 1
2A5 "C3'" S1 1
2A5 N9 S1 1
2A5 C8 S1 1
2A5 N7 S1 1
2A5 C5 S1 1
2A5 C4 S1 1
2A5 C6 S1 1
2A5 N1 S1 1
2A5 C2 S1 1
2A5 N3 S1 1
2A5 N1 F1 1
2A5 C6 F1 1
2A5 C5 F1 1
2A5 C4 F1 1
2A5 N3 F1 1
2A5 C2 F1 1
2A5 N9 F1 1
2A5 C8 F1 1
2A5 N7 F1 1
2A5 N6 F1 1
2A5 C5 F2 1
2A5 C4 F2 1
2A5 N9 F2 1
2A5 C8 F2 1
2A5 N7 F2 1
2A5 O2A F3 1
2A5 PA F3 1
2A5 O1A F3 1
2A5 O3A F3 1
2A5 "O5'" F3 1
2A5 O3A F3 2
2A5 PB F3 2
2A5 O3B F3 2
2A5 O2B F3 2
2A5 O1B F3 2
2A5 N7 F4 1
2A5 C8 F4 1
2A5 N9 F4 1
2A5 C4 F4 1
2A5 C5 F4 1
2A5 C6 F4 1
2A5 N1 F4 1
2A5 C2 F4 1
2A5 N3 F4 1
2A5 C5 F5 1
2A5 C6 F5 1
2A5 N1 F5 1
2A5 C2 F5 1
2A5 N3 F5 1
2A5 C4 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2A5
_pdbe_chem_comp_rdkit_properties.exactmw 455.061
_pdbe_chem_comp_rdkit_properties.amw 455.257
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 15
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 48
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 17
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.583
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 189.735
_pdbe_chem_comp_rdkit_properties.tpsa 232.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.917
_pdbe_chem_comp_rdkit_properties.CrippenMR 90.721
_pdbe_chem_comp_rdkit_properties.chi0v 15.002
_pdbe_chem_comp_rdkit_properties.chi1v 9.638
_pdbe_chem_comp_rdkit_properties.chi2v 4.799
_pdbe_chem_comp_rdkit_properties.chi3v 4.799
_pdbe_chem_comp_rdkit_properties.chi4v 3.205
_pdbe_chem_comp_rdkit_properties.chi0n 32.213
_pdbe_chem_comp_rdkit_properties.chi1n 15.653
_pdbe_chem_comp_rdkit_properties.chi2n 2.884
_pdbe_chem_comp_rdkit_properties.chi3n 2.884
_pdbe_chem_comp_rdkit_properties.chi4n 1.898
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.510
_pdbe_chem_comp_rdkit_properties.kappa1 8.204
_pdbe_chem_comp_rdkit_properties.kappa2 8.317
_pdbe_chem_comp_rdkit_properties.kappa3 4.979
_pdbe_chem_comp_rdkit_properties.Phi 2.353
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2A5 UniChem PDBe 2A5
2A5 UniChem ZINC ZINC000058632958
2A5 UniChem 'PubChem TPHARMA' 87553442
2A5 UniChem PubChem 44626338
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2A5 O2A 4.996 -0.571 1.633 ETKDGv3 1
2A5 PA 4.507 -0.324 0.029 ETKDGv3 2
2A5 O1A 5.695 -0.524 -0.885 ETKDGv3 3
2A5 O3A 3.861 1.240 -0.177 ETKDGv3 4
2A5 PB 5.086 2.370 0.175 ETKDGv3 5
2A5 O2B 6.392 2.187 -0.886 ETKDGv3 6
2A5 O1B 4.454 3.927 -0.014 ETKDGv3 7
2A5 O3B 5.568 2.211 1.601 ETKDGv3 8
2A5 "O5'" 3.321 -1.474 -0.394 ETKDGv3 9
2A5 "C5'" 2.234 -1.343 0.493 ETKDGv3 10
2A5 "C4'" 1.074 -2.226 0.014 ETKDGv3 11
2A5 "O4'" 0.053 -2.214 0.991 ETKDGv3 12
2A5 "C1'" -1.097 -1.632 0.417 ETKDGv3 13
2A5 "C2'" -0.695 -0.924 -0.877 ETKDGv3 14
2A5 C01 -1.848 -0.828 -1.901 ETKDGv3 15
2A5 C02 -1.421 -0.094 -3.178 ETKDGv3 16
2A5 O01 -2.507 0.015 -4.058 ETKDGv3 17
2A5 "C3'" 0.498 -1.741 -1.321 ETKDGv3 18
2A5 "O3'" 0.094 -2.844 -2.093 ETKDGv3 19
2A5 N9 -1.701 -0.701 1.369 ETKDGv3 20
2A5 C8 -1.051 0.384 2.048 ETKDGv3 21
2A5 N7 -1.870 1.303 2.472 ETKDGv3 22
2A5 C5 -3.152 0.841 2.060 ETKDGv3 23
2A5 C4 -3.053 -0.291 1.421 ETKDGv3 24
2A5 C6 -4.453 1.515 2.144 ETKDGv3 25
2A5 N6 -4.603 2.762 2.822 ETKDGv3 26
2A5 N1 -5.479 0.941 1.572 ETKDGv3 27
2A5 C2 -5.342 -0.319 0.868 ETKDGv3 28
2A5 N3 -4.179 -0.911 0.787 ETKDGv3 29
2A5 HO2A 4.295 -0.140 2.185 ETKDGv3 30
2A5 HO2B 6.004 2.324 -1.787 ETKDGv3 31
2A5 HO1B 3.649 3.945 0.564 ETKDGv3 32
2A5 "H5'" 2.532 -1.687 1.508 ETKDGv3 33
2A5 "H5'A" 1.875 -0.290 0.555 ETKDGv3 34
2A5 "H4'" 1.454 -3.267 -0.086 ETKDGv3 35
2A5 "H1'" -1.819 -2.451 0.200 ETKDGv3 36
2A5 "H2'" -0.343 0.106 -0.639 ETKDGv3 37
2A5 H01 -2.685 -0.261 -1.441 ETKDGv3 38
2A5 H01A -2.231 -1.838 -2.162 ETKDGv3 39
2A5 H02 -1.023 0.916 -2.929 ETKDGv3 40
2A5 H02A -0.616 -0.664 -3.687 ETKDGv3 41
2A5 HO01 -3.085 0.742 -3.707 ETKDGv3 42
2A5 "H3'" 1.208 -1.105 -1.901 ETKDGv3 43
2A5 "HO3'" 0.913 -3.201 -2.526 ETKDGv3 44
2A5 H8 0.021 0.453 2.176 ETKDGv3 45
2A5 HN6 -5.536 3.229 2.869 ETKDGv3 46
2A5 HN6A -3.785 3.221 3.279 ETKDGv3 47
2A5 H2 -6.207 -0.768 0.399 ETKDGv3 48
#