data_2EL
#
_chem_comp.id 2EL
_chem_comp.name
;(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[2-(2-hydroxyethoxy)ethyl]sulfanyl}methyl)pyrrolidin-3-
ol
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H25 N5 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms DIETGLYCOL-THIO-DADME-IMMUCILLIN-A
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-05-09
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 367.466
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2EL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4F2P
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2EL OAY OAY O 0 1 N N N N N N -4.470 -7.900 17.587 -9.321 -0.986 -1.702 OAY 2EL 1
2EL CAX CAX C 0 1 N N N N N N -3.088 -7.614 17.553 -9.447 -0.874 -0.283 CAX 2EL 2
2EL CAW CAW C 0 1 N N N N N N -3.017 -6.195 17.037 -8.128 -1.276 0.380 CAW 2EL 3
2EL OAV OAV O 0 1 N N N N N N -2.748 -5.344 18.182 -7.108 -0.344 0.016 OAV 2EL 4
2EL CAU CAU C 0 1 N N N N N N -3.023 -3.981 17.887 -5.829 -0.630 0.585 CAU 2EL 5
2EL CAI CAI C 0 1 N N N N N N -4.471 -3.842 18.223 -4.821 0.427 0.130 CAI 2EL 6
2EL SAH SAH S 0 1 N N N N N N -5.055 -2.149 17.777 -3.197 0.064 0.853 SAH 2EL 7
2EL CAG CAG C 0 1 N N N N N N -4.891 -1.295 19.363 -2.155 1.403 0.209 CAG 2EL 8
2EL CAF CAF C 0 1 N N S N N N -6.085 -1.698 20.309 -0.729 1.237 0.737 CAF 2EL 9
2EL CAE CAE C 0 1 N N N N N N -5.896 -1.027 21.645 -0.086 -0.040 0.153 CAE 2EL 10
2EL CAB CAB C 0 1 N N R N N N -7.489 -1.237 19.855 0.163 2.395 0.243 CAB 2EL 11
2EL OAA OAA O 0 1 N N N N N N -8.577 -1.968 20.450 0.736 3.088 1.354 OAA 2EL 12
2EL CAC CAC C 0 1 N N N N N N -7.541 0.246 20.348 1.269 1.720 -0.597 CAC 2EL 13
2EL NAD NAD N 0 1 N N N N N N -6.945 0.052 21.710 1.334 0.328 -0.082 NAD 2EL 14
2EL CAJ CAJ C 0 1 N N N N N N -6.541 1.260 22.488 1.954 -0.569 -1.065 CAJ 2EL 15
2EL CAK CAK C 0 1 Y N N N N N -5.248 2.002 22.085 3.442 -0.327 -1.097 CAK 2EL 16
2EL CAN CAN C 0 1 Y N N N N N -4.100 2.023 22.796 4.114 0.406 -2.004 CAN 2EL 17
2EL NAO NAO N 0 1 Y N N N N N -3.223 2.818 22.156 5.446 0.399 -1.710 NAO 2EL 18
2EL C5 C5 C 0 1 Y N N N N N -3.852 3.341 21.059 5.671 -0.356 -0.583 C5 2EL 19
2EL C6 C6 C 0 1 Y N N N N N -5.116 2.844 21.033 4.424 -0.838 -0.147 C6 2EL 20
2EL N1 N1 N 0 1 Y N N N N N -6.037 3.177 20.061 4.369 -1.607 0.944 N1 2EL 21
2EL C2 C2 C 0 1 Y N N N N N -5.557 4.031 19.066 5.467 -1.909 1.602 C2 2EL 22
2EL N3 N3 N 0 1 Y N N N N N -4.276 4.532 19.089 6.658 -1.477 1.227 N3 2EL 23
2EL C4 C4 C 0 1 Y N N N N N -3.440 4.219 20.082 6.807 -0.703 0.156 C4 2EL 24
2EL NAR NAR N 0 1 N N N N N N -2.203 4.721 20.091 8.062 -0.258 -0.226 NAR 2EL 25
2EL H1 H1 H 0 1 N N N N N N -4.603 -8.785 17.904 -10.121 -0.746 -2.189 H1 2EL 26
2EL H2 H2 H 0 1 N N N N N N -2.563 -8.303 16.875 -9.686 0.157 -0.020 H2 2EL 27
2EL H3 H3 H 0 1 N N N N N N -2.650 -7.686 18.559 -10.244 -1.532 0.064 H3 2EL 28
2EL H4 H4 H 0 1 N N N N N N -2.208 -6.101 16.297 -8.251 -1.276 1.463 H4 2EL 29
2EL H5 H5 H 0 1 N N N N N N -3.973 -5.913 16.572 -7.844 -2.274 0.046 H5 2EL 30
2EL H6 H6 H 0 1 N N N N N N -2.409 -3.312 18.507 -5.904 -0.616 1.672 H6 2EL 31
2EL H7 H7 H 0 1 N N N N N N -2.843 -3.764 16.824 -5.497 -1.614 0.256 H7 2EL 32
2EL H8 H8 H 0 1 N N N N N N -4.613 -4.005 19.301 -4.746 0.414 -0.957 H8 2EL 33
2EL H9 H9 H 0 1 N N N N N N -5.050 -4.589 17.660 -5.153 1.412 0.459 H9 2EL 34
2EL H10 H10 H 0 1 N N N N N N -3.939 -1.579 19.835 -2.147 1.365 -0.880 H10 2EL 35
2EL H11 H11 H 0 1 N N N N N N -4.907 -0.208 19.196 -2.554 2.363 0.537 H11 2EL 36
2EL H12 H12 H 0 1 N N N N N N -6.085 -2.790 20.437 -0.730 1.196 1.826 H12 2EL 37
2EL H13 H13 H 0 1 N N N N N N -6.039 -1.750 22.461 -0.153 -0.860 0.869 H13 2EL 38
2EL H14 H14 H 0 1 N N N N N N -4.890 -0.589 21.715 -0.568 -0.314 -0.785 H14 2EL 39
2EL H15 H15 H 0 1 N N N N N N -7.549 -1.260 18.757 -0.416 3.082 -0.375 H15 2EL 40
2EL H16 H16 H 0 1 N N N N N N -9.402 -1.629 20.124 1.307 3.827 1.104 H16 2EL 41
2EL H17 H17 H 0 1 N N N N N N -6.931 0.912 19.720 0.999 1.722 -1.653 H17 2EL 42
2EL H18 H18 H 0 1 N N N N N N -8.571 0.630 20.398 2.222 2.226 -0.446 H18 2EL 43
2EL H20 H20 H 0 1 N N N N N N -7.366 1.984 22.414 1.761 -1.604 -0.786 H20 2EL 44
2EL H21 H21 H 0 1 N N N N N N -6.421 0.946 23.535 1.534 -0.374 -2.052 H21 2EL 45
2EL H22 H22 H 0 1 N N N N N N -3.917 1.493 23.719 3.666 0.923 -2.839 H22 2EL 46
2EL H23 H23 H 0 1 N N N N N N -2.279 2.995 22.433 6.132 0.857 -2.221 H23 2EL 47
2EL H24 H24 H 0 1 N N N N N N -6.212 4.307 18.253 5.393 -2.535 2.479 H24 2EL 48
2EL H25 H25 H 0 1 N N N N N N -2.074 5.304 19.289 8.844 -0.509 0.291 H25 2EL 49
2EL H26 H26 H 0 1 N N N N N N -2.069 5.262 20.921 8.160 0.306 -1.009 H26 2EL 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2EL CAW CAX SING N N 1
2EL CAW OAV SING N N 2
2EL CAX OAY SING N N 3
2EL SAH CAI SING N N 4
2EL SAH CAG SING N N 5
2EL CAU OAV SING N N 6
2EL CAU CAI SING N N 7
2EL C2 N3 DOUB Y N 8
2EL C2 N1 SING Y N 9
2EL N3 C4 SING Y N 10
2EL CAG CAF SING N N 11
2EL CAB CAF SING N N 12
2EL CAB CAC SING N N 13
2EL CAB OAA SING N N 14
2EL N1 C6 DOUB Y N 15
2EL C4 NAR SING N N 16
2EL C4 C5 DOUB Y N 17
2EL CAF CAE SING N N 18
2EL CAC NAD SING N N 19
2EL C6 C5 SING Y N 20
2EL C6 CAK SING Y N 21
2EL C5 NAO SING Y N 22
2EL CAE NAD SING N N 23
2EL NAD CAJ SING N N 24
2EL CAK CAJ SING N N 25
2EL CAK CAN DOUB Y N 26
2EL NAO CAN SING Y N 27
2EL OAY H1 SING N N 28
2EL CAX H2 SING N N 29
2EL CAX H3 SING N N 30
2EL CAW H4 SING N N 31
2EL CAW H5 SING N N 32
2EL CAU H6 SING N N 33
2EL CAU H7 SING N N 34
2EL CAI H8 SING N N 35
2EL CAI H9 SING N N 36
2EL CAG H10 SING N N 37
2EL CAG H11 SING N N 38
2EL CAF H12 SING N N 39
2EL CAE H13 SING N N 40
2EL CAE H14 SING N N 41
2EL CAB H15 SING N N 42
2EL OAA H16 SING N N 43
2EL CAC H17 SING N N 44
2EL CAC H18 SING N N 45
2EL CAJ H20 SING N N 46
2EL CAJ H21 SING N N 47
2EL CAN H22 SING N N 48
2EL NAO H23 SING N N 49
2EL C2 H24 SING N N 50
2EL NAR H25 SING N N 51
2EL NAR H26 SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2EL SMILES ACDLabs 12.01 OCCOCCSCC3CN(Cc2cnc1c2ncnc1N)CC3O
2EL InChI InChI 1.03 InChI=1S/C16H25N5O3S/c17-16-15-14(19-10-20-16)11(5-18-15)6-21-7-12(13(23)8-21)9-25-4-3-24-2-1-22/h5,10,12-13,18,22-23H,1-4,6-9H2,(H2,17,19,20)/t12-,13+/m1/s1
2EL InChIKey InChI 1.03 OXNZLFLPEGTARO-OLZOCXBDSA-N
2EL SMILES_CANONICAL CACTVS 3.370 Nc1ncnc2c(CN3C[C@H](O)[C@@H](CSCCOCCO)C3)c[nH]c12
2EL SMILES CACTVS 3.370 Nc1ncnc2c(CN3C[CH](O)[CH](CSCCOCCO)C3)c[nH]c12
2EL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1c(c2c([nH]1)c(ncn2)N)CN3C[C@@H]([C@H](C3)O)CSCCOCCO
2EL SMILES "OpenEye OEToolkits" 1.7.6 c1c(c2c([nH]1)c(ncn2)N)CN3CC(C(C3)O)CSCCOCCO
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2EL "SYSTEMATIC NAME" ACDLabs 12.01 (3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[2-(2-hydroxyethoxy)ethyl]sulfanyl}methyl)pyrrolidin-3-ol
2EL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (3R,4S)-1-[(4-azanyl-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[2-(2-hydroxyethyloxy)ethylsulfanylmethyl]pyrrolidin-3-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2EL 'Create component' 2013-04-25 RCSB
2EL 'Modify synonyms' 2013-04-25 RCSB
2EL 'Initial release' 2013-05-01 RCSB
2EL 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 2EL
_pdbx_chem_comp_synonyms.name DIETGLYCOL-THIO-DADME-IMMUCILLIN-A
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 2EL
_pdbe_chem_comp_synonyms.name DIETGLYCOL-THIO-DADME-IMMUCILLIN-A
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2EL OAY O 21.702 2.410 1
2EL CAX C 20.487 1.531 2
2EL CAW C 19.117 2.143 3
2EL OAV O 17.902 1.264 4
2EL CAU C 16.533 1.876 5
2EL CAI C 15.318 0.997 6
2EL SAH S 13.949 1.609 7
2EL CAG C 12.734 0.729 8
2EL CAF C 11.364 1.342 9
2EL CAE C 10.064 0.594 10
2EL CAB C 11.055 2.809 11
2EL OAA O 12.061 3.922 12
2EL CAC C 9.564 2.969 13
2EL NAD N 8.951 1.600 14
2EL CAJ C 7.483 1.290 15
2EL CAK C 7.018 -0.136 16
2EL CAN C 7.893 -1.343 17
2EL NAO N 7.018 -2.550 18
2EL C5 C 5.598 -2.092 19
2EL C6 C 5.598 -0.593 20
2EL N1 N 4.299 0.158 21
2EL C2 C 3.000 -0.593 22
2EL N3 N 3.000 -2.092 23
2EL C4 C 4.299 -2.842 24
2EL NAR N 4.299 -4.343 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2EL CAW CAX SINGLE NONE 1
2EL CAW OAV SINGLE NONE 2
2EL CAX OAY SINGLE NONE 3
2EL SAH CAI SINGLE NONE 4
2EL SAH CAG SINGLE NONE 5
2EL CAU OAV SINGLE NONE 6
2EL CAU CAI SINGLE NONE 7
2EL C2 N3 DOUBLE NONE 8
2EL C2 N1 SINGLE NONE 9
2EL N3 C4 SINGLE NONE 10
2EL CAF CAG SINGLE BEGINWEDGE 11
2EL CAB CAF SINGLE NONE 12
2EL CAB CAC SINGLE NONE 13
2EL CAB OAA SINGLE BEGINDASH 14
2EL N1 C6 DOUBLE NONE 15
2EL C4 NAR SINGLE NONE 16
2EL C4 C5 DOUBLE NONE 17
2EL CAF CAE SINGLE NONE 18
2EL CAC NAD SINGLE NONE 19
2EL C6 C5 SINGLE NONE 20
2EL C6 CAK SINGLE NONE 21
2EL C5 NAO SINGLE NONE 22
2EL CAE NAD SINGLE NONE 23
2EL NAD CAJ SINGLE NONE 24
2EL CAK CAJ SINGLE NONE 25
2EL CAK CAN DOUBLE NONE 26
2EL NAO CAN SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2EL MurckoScaffold S1 scaffold 'c1ncc2[nH]cc(CN3CCCC3)c2n1' InChI=1S/C11H14N4/c1-2-4-15(3-1)7-9-5-13-10-6-12-8-14-11(9)10/h5-6,8,13H,1-4,7H2 LSNHIITUIUUQQV-UHFFFAOYSA-N
2EL pyrimidine F1 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
2EL pyrrole F2 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2EL CAF S1 1
2EL CAE S1 1
2EL CAB S1 1
2EL CAC S1 1
2EL NAD S1 1
2EL CAJ S1 1
2EL CAK S1 1
2EL CAN S1 1
2EL NAO S1 1
2EL C5 S1 1
2EL C6 S1 1
2EL N1 S1 1
2EL C2 S1 1
2EL N3 S1 1
2EL C4 S1 1
2EL C5 F1 1
2EL C4 F1 1
2EL N3 F1 1
2EL C2 F1 1
2EL N1 F1 1
2EL C6 F1 1
2EL CAN F2 1
2EL CAK F2 1
2EL C6 F2 1
2EL C5 F2 1
2EL NAO F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2EL
_pdbe_chem_comp_rdkit_properties.exactmw 367.168
_pdbe_chem_comp_rdkit_properties.amw 367.475
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.625
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 185.802
_pdbe_chem_comp_rdkit_properties.tpsa 120.520
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.789
_pdbe_chem_comp_rdkit_properties.CrippenMR 95.009
_pdbe_chem_comp_rdkit_properties.chi0v 12.686
_pdbe_chem_comp_rdkit_properties.chi1v 7.027
_pdbe_chem_comp_rdkit_properties.chi2v 3.039
_pdbe_chem_comp_rdkit_properties.chi3v 3.039
_pdbe_chem_comp_rdkit_properties.chi4v 1.978
_pdbe_chem_comp_rdkit_properties.chi0n 36.869
_pdbe_chem_comp_rdkit_properties.chi1n 18.369
_pdbe_chem_comp_rdkit_properties.chi2n 2.547
_pdbe_chem_comp_rdkit_properties.chi3n 2.547
_pdbe_chem_comp_rdkit_properties.chi4n 1.604
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.390
_pdbe_chem_comp_rdkit_properties.kappa1 4.712
_pdbe_chem_comp_rdkit_properties.kappa2 8.815
_pdbe_chem_comp_rdkit_properties.kappa3 4.617
_pdbe_chem_comp_rdkit_properties.Phi 1.661
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2EL UniChem PDBe 2EL
2EL UniChem ZINC ZINC000095920643
2EL UniChem PubChem 71305039
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2EL OAY -5.723 -2.278 1.364 ETKDGv3 1
2EL CAX -4.890 -1.738 2.355 ETKDGv3 2
2EL CAW -4.069 -0.582 1.792 ETKDGv3 3
2EL OAV -4.930 0.480 1.434 ETKDGv3 4
2EL CAU -4.214 1.491 0.752 ETKDGv3 5
2EL CAI -4.375 1.321 -0.758 ETKDGv3 6
2EL SAH -3.452 2.636 -1.638 ETKDGv3 7
2EL CAG -2.236 1.554 -2.478 ETKDGv3 8
2EL CAF -1.151 1.051 -1.507 ETKDGv3 9
2EL CAE -0.182 0.094 -2.181 ETKDGv3 10
2EL CAB -0.246 2.160 -0.973 ETKDGv3 11
2EL OAA -0.692 2.590 0.287 ETKDGv3 12
2EL CAC 1.146 1.524 -0.878 ETKDGv3 13
2EL NAD 1.049 0.146 -1.389 ETKDGv3 14
2EL CAJ 2.222 -0.256 -2.186 ETKDGv3 15
2EL CAK 3.414 -0.438 -1.296 ETKDGv3 16
2EL CAN 4.456 0.402 -1.184 ETKDGv3 17
2EL NAO 5.393 -0.017 -0.178 ETKDGv3 18
2EL C5 4.832 -1.207 0.357 ETKDGv3 19
2EL C6 3.607 -1.492 -0.314 ETKDGv3 20
2EL N1 2.853 -2.502 -0.005 ETKDGv3 21
2EL C2 3.303 -3.375 1.057 ETKDGv3 22
2EL N3 4.429 -3.133 1.687 ETKDGv3 23
2EL C4 5.255 -1.996 1.347 ETKDGv3 24
2EL NAR 6.467 -1.743 2.058 ETKDGv3 25
2EL H1 -6.514 -1.682 1.300 ETKDGv3 26
2EL H2 -4.200 -2.533 2.708 ETKDGv3 27
2EL H3 -5.489 -1.394 3.229 ETKDGv3 28
2EL H4 -3.357 -0.244 2.579 ETKDGv3 29
2EL H5 -3.492 -0.955 0.914 ETKDGv3 30
2EL H6 -4.648 2.471 1.042 ETKDGv3 31
2EL H7 -3.134 1.533 1.028 ETKDGv3 32
2EL H8 -4.045 0.307 -1.062 ETKDGv3 33
2EL H9 -5.449 1.416 -1.021 ETKDGv3 34
2EL H10 -1.768 2.136 -3.300 ETKDGv3 35
2EL H11 -2.760 0.693 -2.946 ETKDGv3 36
2EL H12 -1.624 0.510 -0.658 ETKDGv3 37
2EL H13 0.006 0.416 -3.233 ETKDGv3 38
2EL H14 -0.591 -0.939 -2.183 ETKDGv3 39
2EL H15 -0.215 3.018 -1.686 ETKDGv3 40
2EL H16 -0.196 3.425 0.491 ETKDGv3 41
2EL H17 1.499 1.491 0.176 ETKDGv3 42
2EL H18 1.867 2.141 -1.462 ETKDGv3 43
2EL H20 2.021 -1.231 -2.681 ETKDGv3 44
2EL H21 2.442 0.486 -2.987 ETKDGv3 45
2EL H22 4.573 1.309 -1.762 ETKDGv3 46
2EL H23 6.263 0.478 0.117 ETKDGv3 47
2EL H24 2.706 -4.232 1.335 ETKDGv3 48
2EL H25 7.079 -0.930 1.827 ETKDGv3 49
2EL H26 6.759 -2.383 2.829 ETKDGv3 50
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