data_2ER
#
_chem_comp.id 2ER
_chem_comp.name
"[(2R,3S,4R,5R)-5-[4-AMINOCARBONYL-5-[[(Z)-[(3R,4R)-3,4-DIHYDROXY-2-OXO-5-PHOSPHONOOXY-PENTYL]IMINOMETHYL]AMINO]IMIDAZOL-1-YL]-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H25 N5 O15 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-02-03
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 577.331
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2ER
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2Y88
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2ER N1 N1 N 0 1 Y N N N N N 43.117 8.755 1.555 1.870 0.951 0.236 N1 2ER 1
2ER C2 C2 C 0 1 Y N N N N N 44.209 8.349 0.935 2.303 2.208 -0.061 C2 2ER 2
2ER N3 N3 N 0 1 Y N N N N N 44.134 8.583 -0.377 1.292 3.025 -0.068 N3 2ER 3
2ER C4 C4 C 0 1 Y N N N N N 42.940 9.124 -0.598 0.157 2.334 0.223 C4 2ER 4
2ER C5 C5 C 0 1 Y N N N N N 42.297 9.222 0.590 0.518 1.010 0.412 C5 2ER 5
2ER N6 N6 N 0 1 N N N N N N 41.074 9.714 0.930 -0.323 -0.043 0.727 N6 2ER 6
2ER C7 C7 C 0 1 N N N N N N 40.024 9.472 -0.072 0.182 -1.314 0.847 C7 2ER 7
2ER N8 N8 N 0 1 N N N N N N 38.735 9.995 0.177 -0.600 -2.294 1.162 N8 2ER 8
2ER C9 C9 C 0 1 N N N N N N 42.543 9.537 -1.956 -1.198 2.887 0.315 C9 2ER 9
2ER N9 N9 N 0 1 N N N N N N 43.481 9.269 -2.910 -1.406 4.201 0.099 N9 2ER 10
2ER O9 O9 O 0 1 N N N N N N 41.535 10.237 -2.199 -2.135 2.159 0.585 O9 2ER 11
2ER "O'1" "O'1" O 0 1 N N N N N N 47.938 6.614 4.383 8.283 1.617 -1.233 "O'1" 2ER 12
2ER "O'L" "O'L" O 0 1 N N N N N N 32.212 9.054 -2.129 -8.610 1.118 0.943 "O'L" 2ER 13
2ER "C1'" "C1'" C 0 1 N N R N N N 42.715 8.763 2.960 2.704 -0.249 0.340 "C1'" 2ER 14
2ER C1B C1B C 0 1 N N N N N N 38.578 10.831 1.363 -1.996 -2.030 1.521 C1B 2ER 15
2ER "C2''" "C2''" C 0 0 N N N N N N 37.185 10.937 2.077 -2.905 -2.628 0.478 "C2''" 2ER 16
2ER "C2'" "C2'" C 0 1 N N R N N N 42.652 7.452 3.496 2.650 -1.067 -0.976 "C2'" 2ER 17
2ER "O2'" "O2'" O 0 1 N N N N N N 41.323 6.984 3.335 1.536 -1.962 -0.975 "O2'" 2ER 18
2ER O2B O2B O 0 1 N N N N N N 37.180 11.476 3.193 -2.439 -3.278 -0.427 O2B 2ER 19
2ER "C3''" "C3''" C 0 0 N N R N N N 35.986 10.620 1.189 -4.394 -2.415 0.565 "C3''" 2ER 20
2ER "C3'" "C3'" C 0 1 N N S N N N 42.971 7.725 4.975 3.986 -1.848 -0.927 "C3'" 2ER 21
2ER "O3'" "O3'" O 0 1 N N N N N N 41.903 8.360 5.668 3.774 -3.171 -0.429 "O3'" 2ER 22
2ER O3B O3B O 0 1 N N N N N N 35.627 11.980 1.132 -5.064 -3.411 -0.211 O3B 2ER 23
2ER "C4'" "C4'" C 0 1 N N R N N N 44.116 8.687 4.876 4.861 -1.038 0.048 "C4'" 2ER 24
2ER "O4'" "O4'" O 0 1 N N N N N N 43.978 9.264 3.583 4.097 0.109 0.457 "O4'" 2ER 25
2ER C4B C4B C 0 1 N N R N N N 34.906 9.764 1.849 -4.743 -1.027 0.024 C4B 2ER 26
2ER O4B O4B O 0 1 N N N N N N 35.243 8.376 1.579 -4.015 -0.036 0.752 O4B 2ER 27
2ER "C5'" "C5'" C 0 1 N N N N N N 45.348 7.741 5.038 6.143 -0.586 -0.655 "C5'" 2ER 28
2ER C5B C5B C 0 1 N N N N N N 33.562 10.081 1.204 -6.244 -0.779 0.186 C5B 2ER 29
2ER "O6'" "O6'" O 0 1 N N N N N N 46.473 8.530 5.058 7.000 0.062 0.286 "O6'" 2ER 30
2ER O6B O6B O 0 1 N N N N N N 33.586 9.662 -0.238 -6.589 0.467 -0.423 O6B 2ER 31
2ER "P7'" "P7'" P 0 1 N N N N N N 47.878 7.815 5.357 8.439 0.667 -0.109 "P7'" 2ER 32
2ER P7B P7B P 0 1 N N N N N N 32.358 10.183 -1.145 -8.091 1.047 -0.441 P7B 2ER 33
2ER "O8'" "O8'" O 0 1 N N N N N N 48.905 8.955 5.177 9.420 -0.530 -0.551 "O8'" 2ER 34
2ER O8B O8B O 0 1 N N N N N N 32.761 11.508 -1.761 -9.031 0.076 -1.317 O8B 2ER 35
2ER "O9'" "O9'" O 0 1 N N N N N N 47.735 7.254 6.733 9.066 1.434 1.160 "O9'" 2ER 36
2ER O9B O9B O 0 1 N N N N N N 31.181 10.264 -0.216 -8.089 2.520 -1.090 O9B 2ER 37
2ER H2 H2 H 0 1 N N N N N N 45.053 7.888 1.425 3.328 2.484 -0.259 H2 2ER 38
2ER HN6 HN6 H 0 1 N N N N N N 40.904 10.199 1.788 -1.270 0.117 0.862 HN6 2ER 39
2ER H7 H7 H 0 1 N N N N N N 40.232 8.911 -0.971 1.234 -1.495 0.678 H7 2ER 40
2ER HN9 HN9 H 0 1 N N N N N N 43.116 9.585 -3.786 -0.659 4.781 -0.117 HN9 2ER 41
2ER HN9A HN9A H 0 0 N N N N N N 44.370 8.836 -2.761 -2.302 4.567 0.159 HN9A 2ER 42
2ER "H1'" "H1'" H 0 1 N N N N N N 41.761 9.291 3.108 2.390 -0.861 1.185 "H1'" 2ER 43
2ER H1B H1B H 0 1 N N N N N N 39.274 10.427 2.113 -2.212 -2.477 2.491 H1B 2ER 44
2ER H1BA H1BA H 0 0 N N N N N N 38.751 11.849 0.984 -2.161 -0.954 1.572 H1BA 2ER 45
2ER "H2'" "H2'" H 0 1 N N N N N N 43.316 6.703 3.040 2.616 -0.407 -1.843 "H2'" 2ER 46
2ER "HO2'" "HO2'" H 0 0 N N N N N N 40.918 6.879 4.188 1.459 -2.496 -1.777 "HO2'" 2ER 47
2ER "H3''" "H3''" H 0 0 N N N N N N 36.152 10.040 0.269 -4.712 -2.490 1.605 "H3''" 2ER 48
2ER "H3'" "H3'" H 0 1 N N N N N N 43.169 6.795 5.528 4.444 -1.883 -1.916 "H3'" 2ER 49
2ER "HO3'" "HO3'" H 0 0 N N N N N N 42.152 8.502 6.574 3.182 -3.706 -0.974 "HO3'" 2ER 50
2ER HO3B HO3B H 0 0 N N N N N N 35.546 12.324 2.014 -4.828 -3.402 -1.149 HO3B 2ER 51
2ER "H4'" "H4'" H 0 1 N N N N N N 44.187 9.512 5.600 5.111 -1.648 0.917 "H4'" 2ER 52
2ER H4B H4B H 0 1 N N N N N N 34.847 9.958 2.930 -4.477 -0.971 -1.031 H4B 2ER 53
2ER HO4B HO4B H 0 0 N N N N N N 35.317 8.244 0.641 -4.147 -0.074 1.709 HO4B 2ER 54
2ER "H5'" "H5'" H 0 1 N N N N N N 45.268 7.171 5.976 6.653 -1.454 -1.073 "H5'" 2ER 55
2ER "H5'A" "H5'A" H 0 0 N N N N N N 45.395 7.021 4.208 5.891 0.108 -1.457 "H5'A" 2ER 56
2ER H5B H5B H 0 1 N N N N N N 32.765 9.536 1.731 -6.799 -1.585 -0.294 H5B 2ER 57
2ER H5BA H5BA H 0 0 N N N N N N 33.371 11.162 1.268 -6.494 -0.747 1.247 H5BA 2ER 58
2ER "HO8'" "HO8'" H 0 0 N N N N N N 49.116 9.329 6.025 9.569 -1.192 0.138 "HO8'" 2ER 59
2ER HO8B HO8B H 0 0 N N N N N N 32.845 12.163 -1.078 -8.750 -0.018 -2.237 HO8B 2ER 60
2ER "HO9'" "HO9'" H 0 0 N N N N N N 47.705 6.306 6.687 9.934 1.825 0.993 "HO9'" 2ER 61
2ER HO9B HO9B H 0 0 N N N N N N 31.487 10.281 0.683 -8.963 2.932 -1.133 HO9B 2ER 62
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2ER C5 N1 SING Y N 1
2ER C2 N1 SING Y N 2
2ER N1 "C1'" SING N N 3
2ER N3 C2 DOUB Y N 4
2ER C2 H2 SING N N 5
2ER C4 N3 SING Y N 6
2ER C9 C4 SING N N 7
2ER C4 C5 DOUB Y N 8
2ER C5 N6 SING N N 9
2ER C7 N6 SING N N 10
2ER N6 HN6 SING N N 11
2ER C7 N8 DOUB N N 12
2ER C7 H7 SING N N 13
2ER N8 C1B SING N N 14
2ER N9 C9 SING N N 15
2ER O9 C9 DOUB N N 16
2ER N9 HN9 SING N N 17
2ER N9 HN9A SING N N 18
2ER "O'1" "P7'" DOUB N N 19
2ER "O'L" P7B DOUB N N 20
2ER "C1'" "C2'" SING N N 21
2ER "C1'" "O4'" SING N N 22
2ER "C1'" "H1'" SING N N 23
2ER C1B "C2''" SING N N 24
2ER C1B H1B SING N N 25
2ER C1B H1BA SING N N 26
2ER "C3''" "C2''" SING N N 27
2ER "C2''" O2B DOUB N N 28
2ER "O2'" "C2'" SING N N 29
2ER "C2'" "C3'" SING N N 30
2ER "C2'" "H2'" SING N N 31
2ER "O2'" "HO2'" SING N N 32
2ER O3B "C3''" SING N N 33
2ER "C3''" C4B SING N N 34
2ER "C3''" "H3''" SING N N 35
2ER "C4'" "C3'" SING N N 36
2ER "C3'" "O3'" SING N N 37
2ER "C3'" "H3'" SING N N 38
2ER "O3'" "HO3'" SING N N 39
2ER O3B HO3B SING N N 40
2ER "O4'" "C4'" SING N N 41
2ER "C4'" "C5'" SING N N 42
2ER "C4'" "H4'" SING N N 43
2ER C5B C4B SING N N 44
2ER O4B C4B SING N N 45
2ER C4B H4B SING N N 46
2ER O4B HO4B SING N N 47
2ER "C5'" "O6'" SING N N 48
2ER "C5'" "H5'" SING N N 49
2ER "C5'" "H5'A" SING N N 50
2ER O6B C5B SING N N 51
2ER C5B H5B SING N N 52
2ER C5B H5BA SING N N 53
2ER "O6'" "P7'" SING N N 54
2ER P7B O6B SING N N 55
2ER "O8'" "P7'" SING N N 56
2ER "P7'" "O9'" SING N N 57
2ER O8B P7B SING N N 58
2ER P7B O9B SING N N 59
2ER "O8'" "HO8'" SING N N 60
2ER O8B HO8B SING N N 61
2ER "O9'" "HO9'" SING N N 62
2ER O9B HO9B SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2ER SMILES_CANONICAL CACTVS 3.352 NC(=O)c1ncn([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)c1NC=NCC(=O)[C@H](O)[C@H](O)CO[P](O)(O)=O
2ER SMILES CACTVS 3.352 NC(=O)c1ncn([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)c1NC=NCC(=O)[CH](O)[CH](O)CO[P](O)(O)=O
2ER SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 c1nc(c(n1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N\C=N/CC(=O)[C@@H]([C@@H](COP(=O)(O)O)O)O)C(=O)N
2ER SMILES "OpenEye OEToolkits" 1.6.1 c1nc(c(n1C2C(C(C(O2)COP(=O)(O)O)O)O)NC=NCC(=O)C(C(COP(=O)(O)O)O)O)C(=O)N
2ER InChI InChI 1.03 InChI=1S/C15H25N5O15P2/c16-13(26)9-14(18-4-17-1-6(21)10(23)7(22)2-33-36(27,28)29)20(5-19-9)15-12(25)11(24)8(35-15)3-34-37(30,31)32/h4-5,7-8,10-12,15,22-25H,1-3H2,(H2,16,26)(H,17,18)(H2,27,28,29)(H2,30,31,32)/t7-,8-,10+,11-,12-,15-/m1/s1
2ER InChIKey InChI 1.03 BLKFNHOCHNCLII-GHVQHMAVSA-N
#
_pdbx_chem_comp_identifier.comp_id 2ER
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.6.1
_pdbx_chem_comp_identifier.identifier
"[(2R,3S,4R,5R)-5-[4-aminocarbonyl-5-[[(Z)-[(3R,4R)-3,4-dihydroxy-2-oxo-5-phosphonooxy-pentyl]iminomethyl]amino]imidazol-1-yl]-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2ER 'Create component' 2011-02-03 EBI
2ER 'Modify aromatic_flag' 2011-06-04 RCSB
2ER 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2ER N1 N 6.331 0.824 1
2ER C2 C 5.118 1.706 2
2ER N3 N 5.581 3.132 3
2ER C4 C 7.081 3.132 4
2ER C5 C 7.545 1.706 5
2ER N6 N 8.971 1.242 6
2ER C7 C 10.086 2.246 7
2ER N8 N 11.513 1.782 8
2ER C9 C 7.963 4.346 9
2ER N9 N 9.455 4.189 10
2ER O9 O 7.353 5.716 11
2ER "O'1" O 11.218 -6.468 12
2ER "O'L" O 21.366 5.410 13
2ER "C1'" C 6.331 -0.676 14
2ER C1B C 12.627 2.786 15
2ER "C2''" C 14.054 2.322 16
2ER "C2'" C 5.118 -1.558 17
2ER "O2'" O 3.691 -1.094 18
2ER O2B O 14.366 0.855 19
2ER "C3''" C 15.169 3.326 20
2ER "C3'" C 5.581 -2.985 21
2ER "O3'" O 4.699 -4.198 22
2ER O3B O 14.857 4.793 23
2ER "C4'" C 7.081 -2.985 24
2ER "O4'" O 7.545 -1.558 25
2ER C4B C 16.595 2.862 26
2ER O4B O 16.907 1.395 27
2ER "C5'" C 7.963 -4.198 28
2ER C5B C 17.710 3.866 29
2ER "O6'" O 9.455 -4.041 30
2ER O6B O 19.137 3.403 31
2ER "P7'" P 10.336 -5.255 32
2ER P7B P 20.251 4.406 33
2ER "O8'" O 11.550 -4.373 34
2ER O8B O 21.255 3.292 35
2ER "O9'" O 9.123 -6.136 36
2ER O9B O 19.248 5.521 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2ER C5 N1 SINGLE NONE 1
2ER C2 N1 SINGLE NONE 2
2ER "C1'" N1 SINGLE BEGINDASH 3
2ER N3 C2 DOUBLE NONE 4
2ER C4 N3 SINGLE NONE 5
2ER C9 C4 SINGLE NONE 6
2ER C4 C5 DOUBLE NONE 7
2ER C5 N6 SINGLE NONE 8
2ER C7 N6 SINGLE ENDDOWNRIGHT 9
2ER C7 N8 DOUBLE NONE 10
2ER N8 C1B SINGLE ENDDOWNRIGHT 11
2ER N9 C9 SINGLE NONE 12
2ER O9 C9 DOUBLE NONE 13
2ER "O'1" "P7'" DOUBLE NONE 14
2ER "O'L" P7B DOUBLE NONE 15
2ER "C1'" "C2'" SINGLE NONE 16
2ER "C1'" "O4'" SINGLE NONE 17
2ER C1B "C2''" SINGLE NONE 18
2ER "C3''" "C2''" SINGLE NONE 19
2ER "C2''" O2B DOUBLE NONE 20
2ER "C2'" "O2'" SINGLE BEGINWEDGE 21
2ER "C2'" "C3'" SINGLE NONE 22
2ER "C3''" O3B SINGLE BEGINDASH 23
2ER "C3''" C4B SINGLE NONE 24
2ER "C4'" "C3'" SINGLE NONE 25
2ER "C3'" "O3'" SINGLE BEGINWEDGE 26
2ER "O4'" "C4'" SINGLE NONE 27
2ER "C4'" "C5'" SINGLE BEGINDASH 28
2ER C5B C4B SINGLE NONE 29
2ER C4B O4B SINGLE BEGINWEDGE 30
2ER "C5'" "O6'" SINGLE NONE 31
2ER O6B C5B SINGLE NONE 32
2ER "O6'" "P7'" SINGLE NONE 33
2ER P7B O6B SINGLE NONE 34
2ER "O8'" "P7'" SINGLE NONE 35
2ER "P7'" "O9'" SINGLE NONE 36
2ER O8B P7B SINGLE NONE 37
2ER P7B O9B SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2ER MurckoScaffold S1 scaffold 'c1cn([C@H]2CCCO2)cn1' InChI=1S/C7H10N2O/c1-2-7(10-5-1)9-4-3-8-6-9/h3-4,6-7H,1-2,5H2/t7-/m1/s1 JZCIGFQDEMYNPA-SSDOTTSWSA-N
2ER amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
2ER imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
2ER peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
2ER phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
2ER ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2ER N1 S1 1
2ER C2 S1 1
2ER N3 S1 1
2ER C4 S1 1
2ER C5 S1 1
2ER "C1'" S1 1
2ER "C2'" S1 1
2ER "C3'" S1 1
2ER "C4'" S1 1
2ER "O4'" S1 1
2ER N9 F1 1
2ER C9 F1 1
2ER O9 F1 1
2ER C4 F1 1
2ER C4 F2 1
2ER C5 F2 1
2ER N1 F2 1
2ER C2 F2 1
2ER N3 F2 1
2ER O2B F3 1
2ER "C2''" F3 1
2ER C1B F3 1
2ER N8 F3 1
2ER "O6'" F4 1
2ER "P7'" F4 1
2ER "O'1" F4 1
2ER "O8'" F4 1
2ER "O9'" F4 1
2ER O6B F4 2
2ER P7B F4 2
2ER "O'L" F4 2
2ER O8B F4 2
2ER O9B F4 2
2ER "C2'" F5 1
2ER "C3'" F5 1
2ER "C4'" F5 1
2ER "O4'" F5 1
2ER "C1'" F5 1
2ER "C5'" F5 1
2ER "O6'" F5 1
2ER "O3'" F5 1
2ER "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2ER
_pdbe_chem_comp_rdkit_properties.exactmw 577.082
_pdbe_chem_comp_rdkit_properties.amw 577.333
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 20
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 11
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 18
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 62
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 22
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.600
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 242.337
_pdbe_chem_comp_rdkit_properties.tpsa 326.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP -4.884
_pdbe_chem_comp_rdkit_properties.CrippenMR 115.573
_pdbe_chem_comp_rdkit_properties.chi0v 18.543
_pdbe_chem_comp_rdkit_properties.chi1v 11.159
_pdbe_chem_comp_rdkit_properties.chi2v 3.802
_pdbe_chem_comp_rdkit_properties.chi3v 3.802
_pdbe_chem_comp_rdkit_properties.chi4v 2.228
_pdbe_chem_comp_rdkit_properties.chi0n 41.754
_pdbe_chem_comp_rdkit_properties.chi1n 19.846
_pdbe_chem_comp_rdkit_properties.chi2n 3.173
_pdbe_chem_comp_rdkit_properties.chi3n 3.173
_pdbe_chem_comp_rdkit_properties.chi4n 1.838
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.160
_pdbe_chem_comp_rdkit_properties.kappa1 10.779
_pdbe_chem_comp_rdkit_properties.kappa2 12.590
_pdbe_chem_comp_rdkit_properties.kappa3 8.971
_pdbe_chem_comp_rdkit_properties.Phi 3.668
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2ER UniChem PDBe 2ER
2ER UniChem 'KEGG LIGAND' C04916
2ER UniChem ChEBI 27735
2ER UniChem ZINC ZINC000004096591
2ER UniChem HMDB HMDB0012278
2ER UniChem PubChem 193735
2ER UniChem ACTor 36244-86-7
2ER UniChem 'EPA CompTox Dashboard' DTXSID60189789
2ER UniChem MetaboLights MTBLC27735
2ER UniChem BRENDA 102295
2ER UniChem BRENDA 194875
2ER UniChem BRENDA 195751
2ER UniChem BRENDA 228322
2ER UniChem BRENDA 229074
2ER UniChem BRENDA 94157
2ER UniChem Nikkaji J2.760.456K
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2ER N1 -1.981 -1.897 0.557 ETKDGv3 1
2ER C2 -2.821 -1.992 -0.591 ETKDGv3 2
2ER N3 -2.532 -3.002 -1.348 ETKDGv3 3
2ER C4 -1.427 -3.656 -0.721 ETKDGv3 4
2ER C5 -1.081 -2.983 0.377 ETKDGv3 5
2ER N6 -0.036 -3.309 1.307 ETKDGv3 6
2ER C7 1.285 -3.739 0.942 ETKDGv3 7
2ER N8 2.002 -3.141 0.036 ETKDGv3 8
2ER C9 -0.871 -4.928 -1.222 ETKDGv3 9
2ER N9 -1.109 -5.330 -2.571 ETKDGv3 10
2ER O9 -0.221 -5.689 -0.459 ETKDGv3 11
2ER "O'1" -7.309 2.744 1.918 ETKDGv3 12
2ER "O'L" 6.236 4.455 -2.205 ETKDGv3 13
2ER "C1'" -1.791 -0.715 1.398 ETKDGv3 14
2ER C1B 1.593 -1.979 -0.746 ETKDGv3 15
2ER "C2''" 2.782 -1.421 -1.473 ETKDGv3 16
2ER "C2'" -1.142 0.428 0.597 ETKDGv3 17
2ER "O2'" -0.040 0.978 1.282 ETKDGv3 18
2ER O2B 3.354 -2.114 -2.302 ETKDGv3 19
2ER "C3''" 3.273 -0.014 -1.210 ETKDGv3 20
2ER "C3'" -2.275 1.415 0.432 ETKDGv3 21
2ER "O3'" -1.850 2.758 0.406 ETKDGv3 22
2ER O3B 3.296 0.699 -2.420 ETKDGv3 23
2ER "C4'" -3.191 1.079 1.610 ETKDGv3 24
2ER "O4'" -3.048 -0.294 1.893 ETKDGv3 25
2ER C4B 4.685 -0.042 -0.585 ETKDGv3 26
2ER O4B 4.657 -0.831 0.578 ETKDGv3 27
2ER "C5'" -4.660 1.391 1.309 ETKDGv3 28
2ER C5B 5.174 1.370 -0.221 ETKDGv3 29
2ER "O6'" -4.808 2.772 1.072 ETKDGv3 30
2ER O6B 5.402 2.115 -1.394 ETKDGv3 31
2ER "P7'" -6.447 3.085 0.722 ETKDGv3 32
2ER P7B 5.801 3.717 -0.960 ETKDGv3 33
2ER "O8'" -6.626 4.729 0.362 ETKDGv3 34
2ER O8B 4.443 4.501 -0.317 ETKDGv3 35
2ER "O9'" -6.944 2.172 -0.614 ETKDGv3 36
2ER O9B 7.080 3.737 0.153 ETKDGv3 37
2ER H2 -3.609 -1.288 -0.823 ETKDGv3 38
2ER HN6 -0.271 -3.288 2.324 ETKDGv3 39
2ER H7 1.743 -4.534 1.515 ETKDGv3 40
2ER HN9 -0.737 -6.241 -2.921 ETKDGv3 41
2ER HN9A -1.641 -4.719 -3.229 ETKDGv3 42
2ER "H1'" -1.154 -0.991 2.266 ETKDGv3 43
2ER H1B 0.829 -2.272 -1.494 ETKDGv3 44
2ER H1BA 1.167 -1.214 -0.067 ETKDGv3 45
2ER "H2'" -0.796 0.088 -0.404 ETKDGv3 46
2ER "HO2'" -0.330 1.214 2.202 ETKDGv3 47
2ER "H3''" 2.590 0.500 -0.493 ETKDGv3 48
2ER "H3'" -2.795 1.192 -0.527 ETKDGv3 49
2ER "HO3'" -1.561 3.022 1.317 ETKDGv3 50
2ER HO3B 2.354 0.922 -2.639 ETKDGv3 51
2ER "H4'" -2.888 1.648 2.518 ETKDGv3 52
2ER H4B 5.394 -0.487 -1.325 ETKDGv3 53
2ER HO4B 5.591 -1.117 0.756 ETKDGv3 54
2ER "H5'" -4.978 0.794 0.423 ETKDGv3 55
2ER "H5'A" -5.263 1.081 2.193 ETKDGv3 56
2ER H5B 4.411 1.853 0.431 ETKDGv3 57
2ER H5BA 6.126 1.268 0.348 ETKDGv3 58
2ER "HO8'" -6.242 5.202 1.142 ETKDGv3 59
2ER HO8B 4.420 4.248 0.640 ETKDGv3 60
2ER "HO9'" -7.874 2.462 -0.787 ETKDGv3 61
2ER HO9B 6.662 3.589 1.038 ETKDGv3 62
#