data_2HP
#
_chem_comp.id 2HP
_chem_comp.name "DIHYDROGENPHOSPHATE ION"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "H2 O4 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge -1
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 96.987
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2HP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 1A54
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2HP P P P 0 1 N N N N N N 11.370 39.444 13.137 0.000 0.019 0.000 P 2HP 1
2HP O1 O1 O 0 1 N N N N N N 10.283 39.973 14.028 0.000 0.911 1.261 O1 2HP 2
2HP O2 O2 O -1 1 N N N N N N 10.973 38.112 12.545 1.315 -0.910 0.000 O2 2HP 3
2HP O3 O3 O 0 1 N N N N N N 11.757 40.433 12.097 -1.315 -0.910 0.000 O3 2HP 4
2HP O4 O4 O 0 1 N N N N N N 12.603 39.200 14.021 0.000 0.911 -1.261 O4 2HP 5
2HP HO3 HO3 H 0 1 N N N N N N 12.444 40.098 11.533 -2.077 -0.316 0.000 HO3 2HP 6
2HP HO4 HO4 H 0 1 N N N N N N 13.290 38.865 13.457 ? ? ? HO4 2HP 7
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2HP P O1 DOUB N N 1
2HP P O2 SING N N 2
2HP P O3 SING N N 3
2HP P O4 SING N N 4
2HP O3 HO3 SING N N 5
2HP O4 HO4 SING N N 6
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2HP SMILES ACDLabs 10.04 "[O-]P(=O)(O)O"
2HP SMILES_CANONICAL CACTVS 3.341 O[P](O)([O-])=O
2HP SMILES CACTVS 3.341 O[P](O)([O-])=O
2HP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 OP(=O)(O)[O-]
2HP SMILES "OpenEye OEToolkits" 1.5.0 OP(=O)(O)[O-]
2HP InChI InChI 1.03 InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)/p-1
2HP InChIKey InChI 1.03 NBIIXXVUZAFLBC-UHFFFAOYSA-M
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2HP "SYSTEMATIC NAME" ACDLabs 10.04 "dihydrogen phosphate"
2HP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2HP 'Create component' 1999-07-08 RCSB
2HP 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id 2HP
_pdbe_chem_comp_drugbank_details.drugbank_id DB02831
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Dihydrogenphosphate
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 29505-79-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id 2HP
_pdbe_chem_comp_synonyms.name 'Dihydrogenphosphate ion'
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id 2HP
_pdbe_chem_comp_drugbank_classification.drugbank_id DB02831
_pdbe_chem_comp_drugbank_classification.parent 'Non-metal phosphates'
_pdbe_chem_comp_drugbank_classification.kingdom 'Inorganic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Non-metal oxoanionic compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Homogeneous non-metal compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of inorganic compounds known as non-metal phosphates. These are inorganic non-metallic compounds containing a phosphate as its largest oxoanion.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
2HP DB02831 'L-xylulose reductase' Humans Q7Z4W1 unknown 1
2HP DB02831 'Phosphate-binding protein PstS' 'Escherichia coli (strain K12)' P0AG82 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2HP P P 5.104 0.000 1
2HP O1 O 6.404 0.750 2
2HP O2 O 3.805 -0.750 3
2HP O3 O 4.354 1.299 4
2HP O4 O 5.854 -1.299 5
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2HP P O1 DOUBLE NONE 1
2HP P O2 SINGLE NONE 2
2HP P O3 SINGLE NONE 3
2HP P O4 SINGLE NONE 4
#
_pdbe_chem_comp_substructure.comp_id 2HP
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2HP O2 F1 1
2HP P F1 1
2HP O1 F1 1
2HP O3 F1 1
2HP O4 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2HP
_pdbe_chem_comp_rdkit_properties.exactmw 96.970
_pdbe_chem_comp_rdkit_properties.amw 96.986
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 5
_pdbe_chem_comp_rdkit_properties.NumAtoms 7
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 31.290
_pdbe_chem_comp_rdkit_properties.tpsa 80.590
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.561
_pdbe_chem_comp_rdkit_properties.CrippenMR 12.044
_pdbe_chem_comp_rdkit_properties.chi0v 2.975
_pdbe_chem_comp_rdkit_properties.chi1v 2.191
_pdbe_chem_comp_rdkit_properties.chi2v 0
_pdbe_chem_comp_rdkit_properties.chi3v 0
_pdbe_chem_comp_rdkit_properties.chi4v 0
_pdbe_chem_comp_rdkit_properties.chi0n 4.080
_pdbe_chem_comp_rdkit_properties.chi1n 1.547
_pdbe_chem_comp_rdkit_properties.chi2n 0
_pdbe_chem_comp_rdkit_properties.chi3n 0
_pdbe_chem_comp_rdkit_properties.chi4n 0
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.110
_pdbe_chem_comp_rdkit_properties.kappa1 2.312
_pdbe_chem_comp_rdkit_properties.kappa2 1.065
_pdbe_chem_comp_rdkit_properties.kappa3 1512.242
_pdbe_chem_comp_rdkit_properties.Phi 0.492
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2HP UniChem DrugBank DB02831
2HP UniChem PDBe 2HP
2HP UniChem ChEBI 39745
2HP UniChem SureChEMBL SCHEMBL6070
2HP UniChem 'PubChem TPHARMA' 15194238
2HP UniChem ACTor 29505-79-1
2HP UniChem Nikkaji J3.155.004A
2HP UniChem BindingDb 50155534
2HP UniChem MetaboLights MTBLC39745
2HP UniChem BRENDA 30061
2HP UniChem 'Probes And Drugs' PD007603
2HP UniChem Nikkaji J997.145I
2HP UniChem PubChem 1003
2HP UniChem PubChem 135044136
2HP UniChem PubChem 19972274
2HP UniChem ACTor 14066-20-7
2HP UniChem Nikkaji J2.449.279F
2HP UniChem Nikkaji J238.533C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2HP P -0.097 0.479 -0.082 ETKDGv3 1
2HP O1 0.569 1.096 1.127 ETKDGv3 2
2HP O2 -0.788 1.701 -1.024 ETKDGv3 3
2HP O3 1.053 -0.354 -1.002 ETKDGv3 4
2HP O4 -1.308 -0.591 0.422 ETKDGv3 5
2HP HO3 1.405 -1.054 -0.395 ETKDGv3 6
2HP HO4 -0.834 -1.278 0.955 ETKDGv3 7
#