data_2MG
#
_chem_comp.id 2MG
_chem_comp.name "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE"
_chem_comp.type "RNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C11 H16 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id G
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 377.247
_chem_comp.one_letter_code G
_chem_comp.three_letter_code 2MG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1EVV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2MG P P P 0 1 N N N N N N 34.182 6.441 21.229 -0.771 0.422 -5.220 P 2MG 1
2MG OP1 O1P O 0 1 N N N N N N 33.807 7.163 22.445 -1.595 -0.802 -5.119 OP1 2MG 2
2MG OP2 O2P O 0 1 N N N N N N 33.835 7.023 19.906 -1.664 1.621 -5.819 OP2 2MG 3
2MG OP3 O3P O 0 1 N Y N N N N 35.784 6.127 21.209 0.481 0.148 -6.193 OP3 2MG 4
2MG "O5'" O5* O 0 1 N N N N N N 33.548 4.997 21.378 -0.236 0.831 -3.758 "O5'" 2MG 5
2MG "C5'" C5* C 0 1 N N N N N N 32.120 4.846 21.385 0.544 -0.266 -3.282 "C5'" 2MG 6
2MG "C4'" C4* C 0 1 N N R N N N 31.731 3.523 20.777 1.086 0.059 -1.889 "C4'" 2MG 7
2MG "O4'" O4* O 0 1 N N N N N N 32.216 3.488 19.405 -0.001 0.263 -0.961 "O4'" 2MG 8
2MG "C3'" C3* C 0 1 N N S N N N 32.349 2.313 21.448 1.869 -1.144 -1.319 "C3'" 2MG 9
2MG "O3'" O3* O 0 1 N N N N N N 31.476 1.846 22.471 3.274 -0.965 -1.515 "O3'" 2MG 10
2MG "C2'" C2* C 0 1 N N R N N N 32.424 1.331 20.298 1.526 -1.136 0.188 "C2'" 2MG 11
2MG "O2'" O2* O 0 1 N N N N N N 31.124 0.823 20.028 2.709 -0.955 0.970 "O2'" 2MG 12
2MG "C1'" C1* C 0 1 N N R N N N 32.828 2.239 19.146 0.574 0.068 0.348 "C1'" 2MG 13
2MG N9 N9 N 0 1 Y N N N N N 34.253 2.465 18.920 -0.474 -0.236 1.326 N9 2MG 14
2MG C8 C8 C 0 1 Y N N N N N 34.873 3.690 18.777 -1.676 -0.826 1.062 C8 2MG 15
2MG N7 N7 N 0 1 Y N N N N N 36.153 3.596 18.507 -2.360 -0.944 2.163 N7 2MG 16
2MG C5 C5 C 0 1 Y N N N N N 36.396 2.230 18.482 -1.640 -0.438 3.194 C5 2MG 17
2MG C6 C6 C 0 1 N N N N N N 37.597 1.529 18.262 -1.872 -0.301 4.583 C6 2MG 18
2MG O6 O6 O 0 1 N N N N N N 38.705 1.986 17.983 -2.915 -0.685 5.083 O6 2MG 19
2MG N1 N1 N 0 1 N N N N N N 37.424 0.154 18.384 -0.907 0.262 5.342 N1 2MG 20
2MG C2 C2 C 0 1 N N N N N N 36.227 -0.467 18.673 0.253 0.694 4.771 C2 2MG 21
2MG N2 N2 N 0 1 N N N N N N 36.262 -1.806 18.745 1.213 1.267 5.566 N2 2MG 22
2MG CM2 CM2 C 0 1 N N N N N N 35.076 -2.656 18.899 2.470 1.733 4.975 CM2 2MG 23
2MG N3 N3 N 0 1 N N N N N N 35.084 0.182 18.872 0.480 0.572 3.482 N3 2MG 24
2MG C4 C4 C 0 1 Y N N N N N 35.238 1.516 18.759 -0.427 0.019 2.669 C4 2MG 25
2MG HOP2 2HOP H 0 0 N N N N N N 34.078 6.554 19.116 -1.964 1.336 -6.693 HOP2 2MG 26
2MG HOP3 3HOP H 0 0 N N N N N N 36.027 5.658 20.419 0.990 0.969 -6.231 HOP3 2MG 27
2MG "H5'" 1H5* H 0 1 N N N N N N 31.693 4.975 22.406 1.376 -0.443 -3.963 "H5'" 2MG 28
2MG "H5''" 2H5* H 0 0 N N N N N N 31.609 5.700 20.883 -0.078 -1.159 -3.230 "H5''" 2MG 29
2MG "H4'" H4* H 0 1 N N N N N N 30.622 3.461 20.883 1.723 0.942 -1.927 "H4'" 2MG 30
2MG "H3'" H3* H 0 1 N N N N N N 33.333 2.493 21.938 1.535 -2.072 -1.783 "H3'" 2MG 31
2MG "HO3'" *HO3 H 0 0 N Y N N N N 31.863 1.087 22.891 3.709 -1.743 -1.141 "HO3'" 2MG 32
2MG "H2'" H2* H 0 1 N N N N N N 33.104 0.466 20.480 1.021 -2.061 0.470 "H2'" 2MG 33
2MG "HO2'" *HO2 H 0 0 N N N N N N 31.171 0.206 19.306 3.287 -1.707 0.781 "HO2'" 2MG 34
2MG "H1'" H1* H 0 1 N N N N N N 32.499 1.717 18.216 1.130 0.954 0.654 "H1'" 2MG 35
2MG H8 H8 H 0 1 N N N N N N 34.381 4.672 18.871 -2.009 -1.147 0.087 H8 2MG 36
2MG HN1 HN1 H 0 1 N N N N N N 38.238 -0.445 18.251 -1.043 0.367 6.297 HN1 2MG 37
2MG HN2 HN2 H 0 1 N N N N N N 36.901 -2.047 19.502 1.060 1.364 6.519 HN2 2MG 38
2MG HM21 1HM2 H 0 0 N N N N N N 35.105 -3.769 18.958 3.103 2.156 5.755 HM21 2MG 39
2MG HM22 2HM2 H 0 0 N N N N N N 34.532 -2.295 19.803 2.984 0.895 4.505 HM22 2MG 40
2MG HM23 3HM2 H 0 0 N N N N N N 34.376 -2.392 18.071 2.258 2.496 4.226 HM23 2MG 41
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2MG P OP1 DOUB N N 1
2MG P OP2 SING N N 2
2MG P OP3 SING N N 3
2MG P "O5'" SING N N 4
2MG OP2 HOP2 SING N N 5
2MG OP3 HOP3 SING N N 6
2MG "O5'" "C5'" SING N N 7
2MG "C5'" "C4'" SING N N 8
2MG "C5'" "H5'" SING N N 9
2MG "C5'" "H5''" SING N N 10
2MG "C4'" "O4'" SING N N 11
2MG "C4'" "C3'" SING N N 12
2MG "C4'" "H4'" SING N N 13
2MG "O4'" "C1'" SING N N 14
2MG "C3'" "O3'" SING N N 15
2MG "C3'" "C2'" SING N N 16
2MG "C3'" "H3'" SING N N 17
2MG "O3'" "HO3'" SING N N 18
2MG "C2'" "O2'" SING N N 19
2MG "C2'" "C1'" SING N N 20
2MG "C2'" "H2'" SING N N 21
2MG "O2'" "HO2'" SING N N 22
2MG "C1'" N9 SING N N 23
2MG "C1'" "H1'" SING N N 24
2MG N9 C8 SING Y N 25
2MG N9 C4 SING Y N 26
2MG C8 N7 DOUB Y N 27
2MG C8 H8 SING N N 28
2MG N7 C5 SING Y N 29
2MG C5 C6 SING N N 30
2MG C5 C4 DOUB Y N 31
2MG C6 O6 DOUB N N 32
2MG C6 N1 SING N N 33
2MG N1 C2 SING N N 34
2MG N1 HN1 SING N N 35
2MG C2 N2 SING N N 36
2MG C2 N3 DOUB N N 37
2MG N2 CM2 SING N N 38
2MG N2 HN2 SING N N 39
2MG CM2 HM21 SING N N 40
2MG CM2 HM22 SING N N 41
2MG CM2 HM23 SING N N 42
2MG N3 C4 SING N N 43
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2MG SMILES ACDLabs 10.04 O=C1c2ncn(c2N=C(NC)N1)C3OC(C(O)C3O)COP(=O)(O)O
2MG SMILES_CANONICAL CACTVS 3.341 CNC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
2MG SMILES CACTVS 3.341 CNC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
2MG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CNC1=Nc2c(ncn2[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)C(=O)N1
2MG SMILES "OpenEye OEToolkits" 1.5.0 CNC1=Nc2c(ncn2C3C(C(C(O3)COP(=O)(O)O)O)O)C(=O)N1
2MG InChI InChI 1.03 InChI=1S/C11H16N5O8P/c1-12-11-14-8-5(9(19)15-11)13-3-16(8)10-7(18)6(17)4(24-10)2-23-25(20,21)22/h3-4,6-7,10,17-18H,2H2,1H3,(H2,20,21,22)(H2,12,14,15,19)/t4-,6-,7-,10-/m1/s1
2MG InChIKey InChI 1.03 ZSKBUUXHFBEFIJ-KQYNXXCUSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2MG "SYSTEMATIC NAME" ACDLabs 10.04 "N-methylguanosine 5'-(dihydrogen phosphate)"
2MG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(2-methylamino-6-oxo-1H-purin-9-yl)oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2MG 'Create component' 1999-07-08 RCSB
2MG 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2MG P P 15.311 3.652 1
2MG OP1 O 16.526 4.532 2
2MG OP2 O 16.190 2.437 3
2MG OP3 O 14.431 4.867 4
2MG "O5'" O 14.096 2.772 5
2MG "C5'" C 12.726 3.385 6
2MG "C4'" C 11.511 2.505 7
2MG "O4'" O 11.509 1.005 8
2MG "C3'" C 10.086 2.971 9
2MG "O3'" O 9.625 4.399 10
2MG "C2'" C 9.202 1.759 11
2MG "O2'" O 7.702 1.762 12
2MG "C1'" C 10.082 0.544 13
2MG N9 N 9.616 -0.882 14
2MG C8 C 10.491 -2.089 15
2MG N7 N 9.616 -3.296 16
2MG C5 C 8.196 -2.839 17
2MG C6 C 6.897 -3.589 18
2MG O6 O 6.897 -5.089 19
2MG N1 N 5.598 -2.839 20
2MG C2 C 5.598 -1.339 21
2MG N2 N 4.299 -0.589 22
2MG CM2 C 3.000 -1.339 23
2MG N3 N 6.897 -0.589 24
2MG C4 C 8.196 -1.339 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2MG P OP1 DOUBLE NONE 1
2MG P OP2 SINGLE NONE 2
2MG P OP3 SINGLE NONE 3
2MG P "O5'" SINGLE NONE 4
2MG "O5'" "C5'" SINGLE NONE 5
2MG "C4'" "C5'" SINGLE BEGINWEDGE 6
2MG "C4'" "O4'" SINGLE NONE 7
2MG "C4'" "C3'" SINGLE NONE 8
2MG "O4'" "C1'" SINGLE NONE 9
2MG "C3'" "O3'" SINGLE BEGINDASH 10
2MG "C3'" "C2'" SINGLE NONE 11
2MG "C2'" "O2'" SINGLE BEGINDASH 12
2MG "C2'" "C1'" SINGLE NONE 13
2MG "C1'" N9 SINGLE BEGINWEDGE 14
2MG N9 C8 SINGLE NONE 15
2MG N9 C4 SINGLE NONE 16
2MG C8 N7 DOUBLE NONE 17
2MG N7 C5 SINGLE NONE 18
2MG C5 C6 SINGLE NONE 19
2MG C5 C4 DOUBLE NONE 20
2MG C6 O6 DOUBLE NONE 21
2MG C6 N1 SINGLE NONE 22
2MG N1 C2 SINGLE NONE 23
2MG C2 N2 SINGLE NONE 24
2MG C2 N3 DOUBLE NONE 25
2MG N2 CM2 SINGLE NONE 26
2MG N3 C4 SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2MG MurckoScaffold S1 scaffold 'O=c1[nH]cnc2c1ncn2[C@H]1CCCO1' InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1 JBXHFRZBULGPSC-ZCFIWIBFSA-N
2MG imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
2MG phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
2MG purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
2MG pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
2MG ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
2MG Z54628578 F6 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2MG "C4'" S1 1
2MG "O4'" S1 1
2MG "C3'" S1 1
2MG "C2'" S1 1
2MG "C1'" S1 1
2MG N9 S1 1
2MG C8 S1 1
2MG N7 S1 1
2MG C5 S1 1
2MG C6 S1 1
2MG O6 S1 1
2MG N1 S1 1
2MG C2 S1 1
2MG N3 S1 1
2MG C4 S1 1
2MG C5 F1 1
2MG C4 F1 1
2MG N9 F1 1
2MG C8 F1 1
2MG N7 F1 1
2MG OP2 F2 1
2MG P F2 1
2MG OP1 F2 1
2MG OP3 F2 1
2MG "O5'" F2 1
2MG N7 F3 1
2MG C8 F3 1
2MG N9 F3 1
2MG C4 F3 1
2MG C5 F3 1
2MG C6 F3 1
2MG N1 F3 1
2MG C2 F3 1
2MG N3 F3 1
2MG C5 F4 1
2MG C6 F4 1
2MG N1 F4 1
2MG C2 F4 1
2MG N3 F4 1
2MG C4 F4 1
2MG "C2'" F5 1
2MG "C3'" F5 1
2MG "C4'" F5 1
2MG "O4'" F5 1
2MG "C1'" F5 1
2MG "C5'" F5 1
2MG "O5'" F5 1
2MG "O3'" F5 1
2MG "O2'" F5 1
2MG CM2 F6 1
2MG N2 F6 1
2MG C2 F6 1
2MG N1 F6 1
2MG C6 F6 1
2MG C5 F6 1
2MG C4 F6 1
2MG N3 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2MG
_pdbe_chem_comp_rdkit_properties.exactmw 377.074
_pdbe_chem_comp_rdkit_properties.amw 377.250
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 13
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 41
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 161.982
_pdbe_chem_comp_rdkit_properties.tpsa 192.050
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.019
_pdbe_chem_comp_rdkit_properties.CrippenMR 78.693
_pdbe_chem_comp_rdkit_properties.chi0v 12.344
_pdbe_chem_comp_rdkit_properties.chi1v 7.375
_pdbe_chem_comp_rdkit_properties.chi2v 2.969
_pdbe_chem_comp_rdkit_properties.chi3v 2.969
_pdbe_chem_comp_rdkit_properties.chi4v 1.901
_pdbe_chem_comp_rdkit_properties.chi0n 27.449
_pdbe_chem_comp_rdkit_properties.chi1n 13.442
_pdbe_chem_comp_rdkit_properties.chi2n 2.654
_pdbe_chem_comp_rdkit_properties.chi3n 2.654
_pdbe_chem_comp_rdkit_properties.chi4n 1.706
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.860
_pdbe_chem_comp_rdkit_properties.kappa1 6.702
_pdbe_chem_comp_rdkit_properties.kappa2 6.459
_pdbe_chem_comp_rdkit_properties.kappa3 3.434
_pdbe_chem_comp_rdkit_properties.Phi 1.731
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2MG UniChem PDBe 2MG
2MG UniChem ChEBI 74722
2MG UniChem ZINC ZINC000048015812
2MG UniChem PubChem 136242937
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2MG P 5.917 -0.841 -0.090 ETKDGv3 1
2MG OP1 6.921 -1.691 0.655 ETKDGv3 2
2MG OP2 5.499 -1.625 -1.532 ETKDGv3 3
2MG OP3 6.613 0.664 -0.431 ETKDGv3 4
2MG "O5'" 4.536 -0.640 0.889 ETKDGv3 5
2MG "C5'" 3.626 0.193 0.209 ETKDGv3 6
2MG "C4'" 2.365 0.379 1.059 ETKDGv3 7
2MG "O4'" 1.509 1.308 0.432 ETKDGv3 8
2MG "C3'" 1.594 -0.923 1.258 ETKDGv3 9
2MG "O3'" 2.031 -1.617 2.399 ETKDGv3 10
2MG "C2'" 0.176 -0.441 1.414 ETKDGv3 11
2MG "O2'" -0.119 -0.199 2.767 ETKDGv3 12
2MG "C1'" 0.179 0.876 0.632 ETKDGv3 13
2MG N9 -0.477 0.709 -0.664 ETKDGv3 14
2MG C8 0.043 0.014 -1.807 ETKDGv3 15
2MG N7 -0.875 -0.416 -2.623 ETKDGv3 16
2MG C5 -2.096 -0.014 -2.013 ETKDGv3 17
2MG C6 -3.459 -0.364 -2.390 ETKDGv3 18
2MG O6 -3.711 -0.987 -3.455 ETKDGv3 19
2MG N1 -4.506 0.025 -1.487 ETKDGv3 20
2MG C2 -4.166 0.701 -0.249 ETKDGv3 21
2MG N2 -5.183 1.078 0.691 ETKDGv3 22
2MG CM2 -6.600 0.820 0.471 ETKDGv3 23
2MG N3 -2.915 0.968 0.029 ETKDGv3 24
2MG C4 -1.872 0.611 -0.889 ETKDGv3 25
2MG HOP2 5.292 -0.896 -2.170 ETKDGv3 26
2MG HOP3 7.369 0.462 -1.039 ETKDGv3 27
2MG "H5'" 3.335 -0.245 -0.772 ETKDGv3 28
2MG "H5''" 4.074 1.198 0.041 ETKDGv3 29
2MG "H4'" 2.659 0.796 2.050 ETKDGv3 30
2MG "H3'" 1.655 -1.570 0.349 ETKDGv3 31
2MG "HO3'" 2.791 -2.188 2.113 ETKDGv3 32
2MG "H2'" -0.536 -1.191 0.994 ETKDGv3 33
2MG "HO2'" -1.103 -0.082 2.824 ETKDGv3 34
2MG "H1'" -0.362 1.665 1.199 ETKDGv3 35
2MG H8 1.098 -0.164 -1.971 ETKDGv3 36
2MG HN1 -5.495 -0.200 -1.729 ETKDGv3 37
2MG HN2 -4.898 1.560 1.573 ETKDGv3 38
2MG HM21 -6.941 1.338 -0.450 ETKDGv3 39
2MG HM22 -6.775 -0.273 0.378 ETKDGv3 40
2MG HM23 -7.190 1.201 1.331 ETKDGv3 41
#