data_2NE
#
_chem_comp.id 2NE
_chem_comp.name "Salicylyl CoA"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H40 N7 O18 P3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-12-20
_chem_comp.pdbx_modified_date 2013-05-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 887.640
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2NE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4I4Z
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2NE C01 C01 C 0 1 N N N N N N 45.268 -48.145 15.587 1.340 4.510 -2.355 C01 2NE 1
2NE C02 C02 C 0 1 N N N N N N 43.882 -48.050 14.934 0.916 5.769 -1.595 C02 2NE 2
2NE C03 C03 C 0 1 N N N N N N 43.903 -46.992 13.845 -0.226 6.457 -2.346 C03 2NE 3
2NE C04 C04 C 0 1 N N N N N N 42.890 -47.636 16.012 0.444 5.383 -0.192 C04 2NE 4
2NE O05 O05 O 0 1 N N N N N N 42.754 -48.655 16.957 -0.667 4.490 -0.292 O05 2NE 5
2NE P06 P06 P 0 1 N N N N N N 41.385 -48.733 17.772 -1.419 3.878 0.994 P06 2NE 6
2NE O07 O07 O 0 1 N N N N N N 41.475 -49.892 18.766 -0.407 2.923 1.804 O07 2NE 7
2NE O08 O08 O 0 1 N N N N N N 41.097 -47.435 18.444 -1.867 4.981 1.874 O08 2NE 8
2NE O09 O09 O 0 1 N N N N N N 40.181 -48.920 16.740 -2.695 3.023 0.513 O09 2NE 9
2NE P10 P10 P 0 1 N N N N N N 39.693 -50.306 16.147 -4.042 2.520 1.237 P10 2NE 10
2NE O11 O11 O 0 1 N N N N N N 38.745 -50.963 17.096 -5.104 3.729 1.295 O11 2NE 11
2NE O12 O12 O 0 1 N N N N N N 40.865 -51.221 15.883 -3.726 2.076 2.613 O12 2NE 12
2NE O13 O13 O 0 1 N N N N N N 38.964 -49.971 14.788 -4.671 1.292 0.408 O13 2NE 13
2NE C14 C14 C 0 1 N N N N N N 37.717 -49.370 14.780 -5.814 0.557 0.852 C14 2NE 14
2NE C15 C15 C 0 1 N N R N N N 36.998 -49.761 13.565 -6.144 -0.535 -0.167 C15 2NE 15
2NE O16 O16 O 0 1 N N N N N N 37.521 -49.030 12.364 -5.095 -1.517 -0.188 O16 2NE 16
2NE C17 C17 C 0 1 N N R N N N 38.145 -50.147 11.555 -5.717 -2.794 -0.448 C17 2NE 17
2NE C18 C18 C 0 1 N N R N N N 38.304 -51.252 12.465 -7.016 -2.741 0.395 C18 2NE 18
2NE O19 O19 O 0 1 N N N N N N 38.353 -52.517 11.769 -8.011 -3.614 -0.145 O19 2NE 19
2NE C20 C20 C 0 1 N N S N N N 37.166 -51.181 13.297 -7.443 -1.257 0.242 C20 2NE 20
2NE O21 O21 O 0 1 N N N N N N 36.038 -51.713 12.560 -8.436 -1.125 -0.777 O21 2NE 21
2NE P22 P22 P 0 1 N N N N N N 34.899 -52.529 13.291 -9.896 -0.505 -0.504 P22 2NE 22
2NE O23 O23 O 0 1 N N N N N N 33.941 -53.058 12.254 -10.548 -1.247 0.599 O23 2NE 23
2NE O24 O24 O 0 1 N N N N N N 35.522 -53.691 14.045 -9.754 1.046 -0.097 O24 2NE 24
2NE O25 O25 O 0 1 N N N N N N 34.190 -51.588 14.263 -10.791 -0.631 -1.837 O25 2NE 25
2NE N26 N26 N 0 1 Y N N N N N 39.353 -49.765 10.986 -4.854 -3.889 0.002 N26 2NE 26
2NE C27 C27 C 0 1 Y N N N N N 40.331 -49.010 11.532 -3.883 -3.812 0.956 C27 2NE 27
2NE N28 N28 N 0 1 Y N N N N N 41.342 -48.876 10.651 -3.313 -4.972 1.105 N28 2NE 28
2NE C29 C29 C 0 1 Y N N N N N 41.010 -49.550 9.522 -3.881 -5.866 0.260 C29 2NE 29
2NE C30 C30 C 0 1 Y N N N N N 41.633 -49.768 8.294 -3.686 -7.230 -0.012 C30 2NE 30
2NE N31 N31 N 0 1 N N N N N N 42.945 -49.212 7.999 -2.717 -7.955 0.660 N31 2NE 31
2NE N32 N32 N 0 1 Y N N N N N 41.024 -50.516 7.349 -4.453 -7.809 -0.930 N32 2NE 32
2NE C33 C33 C 0 1 Y N N N N N 39.812 -51.042 7.594 -5.380 -7.126 -1.576 C33 2NE 33
2NE N34 N34 N 0 1 Y N N N N N 39.188 -50.849 8.754 -5.598 -5.846 -1.354 N34 2NE 34
2NE C35 C35 C 0 1 Y N N N N N 39.759 -50.111 9.738 -4.880 -5.183 -0.454 C35 2NE 35
2NE C36 C36 C 0 1 N N R N N N 43.476 -49.430 14.399 2.105 6.726 -1.488 C36 2NE 36
2NE O37 O37 O 0 1 N N N N N N 42.205 -49.375 13.885 1.677 7.954 -0.898 O37 2NE 37
2NE C38 C38 C 0 1 N N N N N N 44.406 -49.948 13.339 3.176 6.102 -0.629 C38 2NE 38
2NE O39 O39 O 0 1 N N N N N N 45.540 -50.396 13.587 3.432 6.575 0.458 O39 2NE 39
2NE N40 N40 N 0 1 N N N N N N 43.985 -49.933 11.927 3.848 5.020 -1.069 N40 2NE 40
2NE C41 C41 C 0 1 N N N N N N 44.943 -50.461 10.986 4.819 4.356 -0.197 C41 2NE 41
2NE C42 C42 C 0 1 N N N N N N 45.578 -49.364 10.231 5.435 3.165 -0.933 C42 2NE 42
2NE C43 C43 C 0 1 N N N N N N 46.551 -50.018 9.281 6.435 2.482 -0.035 C43 2NE 43
2NE O44 O44 O 0 1 N N N N N N 47.155 -51.045 9.634 6.634 2.906 1.083 O44 2NE 44
2NE N45 N45 N 0 1 N N N N N N 46.778 -49.472 7.941 7.107 1.400 -0.476 N45 2NE 45
2NE C46 C46 C 0 1 N N N N N N 47.721 -50.167 7.098 8.078 0.735 0.397 C46 2NE 46
2NE C47 C47 C 0 1 N N N N N N 47.115 -50.413 5.762 8.694 -0.456 -0.339 C47 2NE 47
2NE S48 S48 S 0 1 N N N N N N 48.397 -50.027 4.604 9.895 -1.276 0.739 S48 2NE 48
2NE C49 C49 C 0 1 N N N N N N 48.145 -48.369 4.018 10.432 -2.569 -0.330 C49 2NE 49
2NE O50 O50 O 0 1 N N N N N N 47.798 -47.482 4.806 9.965 -2.668 -1.449 O50 2NE 50
2NE C51 C51 C 0 1 Y N N N N N 48.521 -48.018 2.585 11.449 -3.534 0.132 C51 2NE 51
2NE C52 C52 C 0 1 Y N N N N N 49.854 -47.708 2.277 11.879 -4.564 -0.715 C52 2NE 52
2NE O53 O53 O 0 1 N N N N N N 50.802 -47.722 3.281 11.363 -4.680 -1.964 O53 2NE 53
2NE C54 C54 C 0 1 Y N N N N N 50.202 -47.399 0.963 12.835 -5.465 -0.270 C54 2NE 54
2NE C55 C55 C 0 1 Y N N N N N 49.225 -47.393 -0.051 13.359 -5.346 1.002 C55 2NE 55
2NE C56 C56 C 0 1 Y N N N N N 47.901 -47.699 0.259 12.937 -4.329 1.842 C56 2NE 56
2NE C57 C57 C 0 1 Y N N N N N 47.552 -48.016 1.574 11.992 -3.422 1.414 C57 2NE 57
2NE H1 H1 H 0 1 N N N N N N 45.251 -48.912 16.375 0.468 3.881 -2.531 H1 2NE 58
2NE H2 H2 H 0 1 N N N N N N 46.014 -48.419 14.826 1.782 4.794 -3.310 H2 2NE 59
2NE H3 H3 H 0 1 N N N N N N 45.533 -47.172 16.027 2.073 3.960 -1.765 H3 2NE 60
2NE H4 H4 H 0 1 N N N N N N 44.199 -46.025 14.278 -1.094 5.799 -2.369 H4 2NE 61
2NE H5 H5 H 0 1 N N N N N N 44.625 -47.281 13.067 -0.487 7.385 -1.837 H5 2NE 62
2NE H6 H6 H 0 1 N N N N N N 42.901 -46.903 13.401 0.091 6.678 -3.365 H6 2NE 63
2NE H7 H7 H 0 1 N N N N N N 43.253 -46.725 16.510 1.258 4.893 0.343 H7 2NE 64
2NE H8 H8 H 0 1 N N N N N N 41.912 -47.436 15.549 0.142 6.280 0.349 H8 2NE 65
2NE H9 H9 H 0 1 N N N N N N 41.328 -49.567 19.646 -0.073 2.177 1.287 H9 2NE 66
2NE H10 H10 H 0 1 N N N N N N 39.078 -51.820 17.335 -5.358 4.071 0.426 H10 2NE 67
2NE H11 H11 H 0 1 N N N N N N 37.836 -48.277 14.801 -5.599 0.101 1.818 H11 2NE 68
2NE H12 H12 H 0 1 N N N N N N 37.148 -49.693 15.664 -6.664 1.232 0.949 H12 2NE 69
2NE H13 H13 H 0 1 N N N N N N 35.928 -49.533 13.684 -6.261 -0.096 -1.157 H13 2NE 70
2NE H14 H14 H 0 1 N N N N N N 37.436 -50.433 10.764 -5.951 -2.899 -1.507 H14 2NE 71
2NE H15 H15 H 0 1 N N N N N N 39.220 -51.118 13.059 -6.813 -2.983 1.439 H15 2NE 72
2NE H16 H16 H 0 1 N N N N N N 38.458 -53.221 12.398 -7.752 -4.546 -0.154 H16 2NE 73
2NE H17 H17 H 0 1 N N N N N N 37.319 -51.738 14.233 -7.814 -0.867 1.190 H17 2NE 74
2NE H18 H18 H 0 1 N N N N N N 35.178 -54.509 13.706 -9.334 1.593 -0.774 H18 2NE 75
2NE H19 H19 H 0 1 N N N N N N 33.273 -51.517 14.024 -11.686 -0.276 -1.744 H19 2NE 76
2NE H20 H20 H 0 1 N N N N N N 40.307 -48.580 12.522 -3.625 -2.919 1.506 H20 2NE 77
2NE H21 H21 H 0 1 N N N N N N 43.223 -49.483 7.077 -2.163 -7.521 1.328 H21 2NE 78
2NE H22 H22 H 0 1 N N N N N N 42.904 -48.214 8.055 -2.592 -8.896 0.463 H22 2NE 79
2NE H23 H23 H 0 1 N N N N N N 39.332 -51.636 6.831 -5.982 -7.635 -2.314 H23 2NE 80
2NE H24 H24 H 0 1 N N N N N N 43.503 -50.133 15.244 2.506 6.920 -2.483 H24 2NE 81
2NE H25 H25 H 0 1 N N N N N N 41.609 -49.048 14.548 1.309 7.857 -0.009 H25 2NE 82
2NE H26 H26 H 0 1 N N N N N N 43.094 -49.580 11.640 3.688 4.681 -1.964 H26 2NE 83
2NE H27 H27 H 0 1 N N N N N N 44.429 -51.134 10.284 5.604 5.061 0.075 H27 2NE 84
2NE H28 H28 H 0 1 N N N N N N 45.717 -51.021 11.532 4.317 4.005 0.705 H28 2NE 85
2NE H29 H29 H 0 1 N N N N N N 46.110 -48.687 10.916 4.650 2.460 -1.205 H29 2NE 86
2NE H30 H30 H 0 1 N N N N N N 44.820 -48.797 9.671 5.937 3.515 -1.835 H30 2NE 87
2NE H31 H31 H 0 1 N N N N N N 46.300 -48.653 7.624 6.947 1.060 -1.370 H31 2NE 88
2NE H32 H32 H 0 1 N N N N N N 47.986 -51.129 7.562 8.863 1.441 0.669 H32 2NE 89
2NE H33 H33 H 0 1 N N N N N N 48.627 -49.554 6.981 7.576 0.385 1.299 H33 2NE 90
2NE H34 H34 H 0 1 N N N N N N 46.243 -49.761 5.606 7.909 -1.161 -0.611 H34 2NE 91
2NE H35 H35 H 0 1 N N N N N N 46.808 -51.465 5.664 9.196 -0.105 -1.241 H35 2NE 92
2NE H36 H36 H 0 1 N N N N N N 50.388 -47.952 4.105 11.853 -4.189 -2.639 H36 2NE 93
2NE H37 H37 H 0 1 N N N N N N 51.228 -47.163 0.721 13.170 -6.260 -0.920 H37 2NE 94
2NE H38 H38 H 0 1 N N N N N N 49.501 -47.152 -1.067 14.100 -6.053 1.345 H38 2NE 95
2NE H39 H39 H 0 1 N N N N N N 47.148 -47.691 -0.515 13.353 -4.245 2.835 H39 2NE 96
2NE H40 H40 H 0 1 N N N N N N 46.528 -48.261 1.813 11.665 -2.630 2.072 H40 2NE 97
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2NE C55 C56 DOUB Y N 1
2NE C55 C54 SING Y N 2
2NE C56 C57 SING Y N 3
2NE C54 C52 DOUB Y N 4
2NE C57 C51 DOUB Y N 5
2NE C52 C51 SING Y N 6
2NE C52 O53 SING N N 7
2NE C51 C49 SING N N 8
2NE C49 S48 SING N N 9
2NE C49 O50 DOUB N N 10
2NE S48 C47 SING N N 11
2NE C47 C46 SING N N 12
2NE C46 N45 SING N N 13
2NE N32 C33 DOUB Y N 14
2NE N32 C30 SING Y N 15
2NE C33 N34 SING Y N 16
2NE N45 C43 SING N N 17
2NE N31 C30 SING N N 18
2NE C30 C29 DOUB Y N 19
2NE N34 C35 DOUB Y N 20
2NE C43 O44 DOUB N N 21
2NE C43 C42 SING N N 22
2NE C29 C35 SING Y N 23
2NE C29 N28 SING Y N 24
2NE C35 N26 SING Y N 25
2NE C42 C41 SING N N 26
2NE N28 C27 DOUB Y N 27
2NE C41 N40 SING N N 28
2NE N26 C27 SING Y N 29
2NE N26 C17 SING N N 30
2NE C17 O16 SING N N 31
2NE C17 C18 SING N N 32
2NE O19 C18 SING N N 33
2NE N40 C38 SING N N 34
2NE O23 P22 DOUB N N 35
2NE O16 C15 SING N N 36
2NE C18 C20 SING N N 37
2NE O21 P22 SING N N 38
2NE O21 C20 SING N N 39
2NE P22 O24 SING N N 40
2NE P22 O25 SING N N 41
2NE C20 C15 SING N N 42
2NE C38 O39 DOUB N N 43
2NE C38 C36 SING N N 44
2NE C15 C14 SING N N 45
2NE C03 C02 SING N N 46
2NE O37 C36 SING N N 47
2NE C36 C02 SING N N 48
2NE C14 O13 SING N N 49
2NE O13 P10 SING N N 50
2NE C02 C01 SING N N 51
2NE C02 C04 SING N N 52
2NE O12 P10 DOUB N N 53
2NE C04 O05 SING N N 54
2NE P10 O09 SING N N 55
2NE P10 O11 SING N N 56
2NE O09 P06 SING N N 57
2NE O05 P06 SING N N 58
2NE P06 O08 DOUB N N 59
2NE P06 O07 SING N N 60
2NE C01 H1 SING N N 61
2NE C01 H2 SING N N 62
2NE C01 H3 SING N N 63
2NE C03 H4 SING N N 64
2NE C03 H5 SING N N 65
2NE C03 H6 SING N N 66
2NE C04 H7 SING N N 67
2NE C04 H8 SING N N 68
2NE O07 H9 SING N N 69
2NE O11 H10 SING N N 70
2NE C14 H11 SING N N 71
2NE C14 H12 SING N N 72
2NE C15 H13 SING N N 73
2NE C17 H14 SING N N 74
2NE C18 H15 SING N N 75
2NE O19 H16 SING N N 76
2NE C20 H17 SING N N 77
2NE O24 H18 SING N N 78
2NE O25 H19 SING N N 79
2NE C27 H20 SING N N 80
2NE N31 H21 SING N N 81
2NE N31 H22 SING N N 82
2NE C33 H23 SING N N 83
2NE C36 H24 SING N N 84
2NE O37 H25 SING N N 85
2NE N40 H26 SING N N 86
2NE C41 H27 SING N N 87
2NE C41 H28 SING N N 88
2NE C42 H29 SING N N 89
2NE C42 H30 SING N N 90
2NE N45 H31 SING N N 91
2NE C46 H32 SING N N 92
2NE C46 H33 SING N N 93
2NE C47 H34 SING N N 94
2NE C47 H35 SING N N 95
2NE O53 H36 SING N N 96
2NE C54 H37 SING N N 97
2NE C55 H38 SING N N 98
2NE C56 H39 SING N N 99
2NE C57 H40 SING N N 100
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2NE SMILES ACDLabs 12.01 O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)c4ccccc4O
2NE InChI InChI 1.03 InChI=1S/C28H40N7O18P3S/c1-28(2,22(39)25(40)31-8-7-18(37)30-9-10-57-27(41)15-5-3-4-6-16(15)36)12-50-56(47,48)53-55(45,46)49-11-17-21(52-54(42,43)44)20(38)26(51-17)35-14-34-19-23(29)32-13-33-24(19)35/h3-6,13-14,17,20-22,26,36,38-39H,7-12H2,1-2H3,(H,30,37)(H,31,40)(H,45,46)(H,47,48)(H2,29,32,33)(H2,42,43,44)/t17-,20-,21-,22+,26-/m1/s1
2NE InChIKey InChI 1.03 YTKKDFTVSNSVEE-TYHXJLICSA-N
2NE SMILES_CANONICAL CACTVS 3.370 CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O
2NE SMILES CACTVS 3.370 CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O
2NE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O)O
2NE SMILES "OpenEye OEToolkits" 1.7.6 CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2NE "SYSTEMATIC NAME" ACDLabs 12.01 "S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2-hydroxybenzenecarbothioate (non-preferred name)"
2NE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-oxidanylbenzenecarbothioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2NE 'Create component' 2012-12-20 PDBJ
2NE 'Initial release' 2013-05-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2NE C01 C 16.180 -0.373 1
2NE C02 C 16.494 1.093 2
2NE C03 C 16.809 2.560 3
2NE C04 C 17.961 0.779 4
2NE O05 O 18.422 -0.648 5
2NE P06 P 19.889 -0.963 6
2NE O07 O 19.574 -2.429 7
2NE O08 O 20.203 0.504 8
2NE O09 O 21.355 -1.277 9
2NE P10 P 21.816 -2.705 10
2NE O11 O 23.244 -2.244 11
2NE O12 O 20.389 -3.166 12
2NE O13 O 22.277 -4.132 13
2NE C14 C 23.744 -4.447 14
2NE C15 C 24.205 -5.874 15
2NE O16 O 23.321 -7.086 16
2NE C17 C 24.201 -8.301 17
2NE C18 C 25.628 -7.840 18
2NE O19 O 26.840 -8.724 19
2NE C20 C 25.631 -6.340 20
2NE O21 O 26.846 -5.460 21
2NE P22 P 26.692 -3.968 22
2NE O23 O 26.538 -2.476 23
2NE O24 O 28.184 -3.814 24
2NE O25 O 25.200 -4.122 25
2NE N26 N 23.735 -9.727 26
2NE C27 C 24.610 -10.934 27
2NE N28 N 23.735 -12.141 28
2NE C29 C 22.316 -11.684 29
2NE C30 C 21.017 -12.434 30
2NE N31 N 21.017 -13.934 31
2NE N32 N 19.718 -11.684 32
2NE C33 C 19.718 -10.184 33
2NE N34 N 21.017 -9.434 34
2NE C35 C 22.316 -10.184 35
2NE C36 C 15.027 1.408 36
2NE O37 O 14.022 0.295 37
2NE C38 C 14.566 2.835 38
2NE O39 O 15.572 3.948 39
2NE N40 N 13.100 3.150 40
2NE C41 C 12.639 4.577 41
2NE C42 C 11.172 4.891 42
2NE C43 C 10.711 6.319 43
2NE O44 O 11.716 7.432 44
2NE N45 N 9.244 6.633 45
2NE C46 C 8.783 8.060 46
2NE C47 C 7.316 8.375 47
2NE S48 S 6.855 9.802 48
2NE C49 C 5.389 10.117 49
2NE O50 O 4.383 9.004 50
2NE C51 C 4.928 11.544 51
2NE C52 C 5.933 12.657 52
2NE O53 O 7.400 12.343 53
2NE C54 C 5.472 14.084 54
2NE C55 C 4.006 14.399 55
2NE C56 C 3.000 13.286 56
2NE C57 C 3.461 11.858 57
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2NE C55 C56 DOUBLE NONE 1
2NE C55 C54 SINGLE NONE 2
2NE C56 C57 SINGLE NONE 3
2NE C54 C52 DOUBLE NONE 4
2NE C57 C51 DOUBLE NONE 5
2NE C52 C51 SINGLE NONE 6
2NE C52 O53 SINGLE NONE 7
2NE C51 C49 SINGLE NONE 8
2NE C49 S48 SINGLE NONE 9
2NE C49 O50 DOUBLE NONE 10
2NE S48 C47 SINGLE NONE 11
2NE C47 C46 SINGLE NONE 12
2NE C46 N45 SINGLE NONE 13
2NE N32 C33 DOUBLE NONE 14
2NE N32 C30 SINGLE NONE 15
2NE C33 N34 SINGLE NONE 16
2NE N45 C43 SINGLE NONE 17
2NE N31 C30 SINGLE NONE 18
2NE C30 C29 DOUBLE NONE 19
2NE N34 C35 DOUBLE NONE 20
2NE C43 O44 DOUBLE NONE 21
2NE C43 C42 SINGLE NONE 22
2NE C29 C35 SINGLE NONE 23
2NE C29 N28 SINGLE NONE 24
2NE C35 N26 SINGLE NONE 25
2NE C42 C41 SINGLE NONE 26
2NE N28 C27 DOUBLE NONE 27
2NE C41 N40 SINGLE NONE 28
2NE N26 C27 SINGLE NONE 29
2NE C17 N26 SINGLE BEGINDASH 30
2NE C17 O16 SINGLE NONE 31
2NE C17 C18 SINGLE NONE 32
2NE C18 O19 SINGLE BEGINWEDGE 33
2NE N40 C38 SINGLE NONE 34
2NE O23 P22 DOUBLE NONE 35
2NE O16 C15 SINGLE NONE 36
2NE C18 C20 SINGLE NONE 37
2NE O21 P22 SINGLE NONE 38
2NE C20 O21 SINGLE BEGINWEDGE 39
2NE P22 O24 SINGLE NONE 40
2NE P22 O25 SINGLE NONE 41
2NE C20 C15 SINGLE NONE 42
2NE C38 O39 DOUBLE NONE 43
2NE C38 C36 SINGLE NONE 44
2NE C15 C14 SINGLE BEGINDASH 45
2NE C03 C02 SINGLE NONE 46
2NE C36 O37 SINGLE BEGINWEDGE 47
2NE C36 C02 SINGLE NONE 48
2NE C14 O13 SINGLE NONE 49
2NE O13 P10 SINGLE NONE 50
2NE C02 C01 SINGLE NONE 51
2NE C02 C04 SINGLE NONE 52
2NE O12 P10 DOUBLE NONE 53
2NE C04 O05 SINGLE NONE 54
2NE P10 O09 SINGLE NONE 55
2NE P10 O11 SINGLE BEGINDASH 56
2NE O09 P06 SINGLE NONE 57
2NE O05 P06 SINGLE NONE 58
2NE P06 O08 DOUBLE NONE 59
2NE P06 O07 SINGLE BEGINDASH 60
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2NE MurckoScaffold S1 scaffold 'O=C(CCCO[PH](=O)O[PH](=O)OC[C@@H]1CC[C@H](n2cnc3cncnc32)O1)NCCC(=O)NCCSC(=O)c1ccccc1' InChI=1S/C26H34N6O9P2S/c33-22(28-11-10-23(34)29-12-14-44-26(35)19-5-2-1-3-6-19)7-4-13-38-42(36)41-43(37)39-16-20-8-9-24(40-20)32-18-31-21-15-27-17-30-25(21)32/h1-3,5-6,15,17-18,20,24,42-43H,4,7-14,16H2,(H,28,33)(H,29,34)/t20-,24+/m0/s1 IANJLOJYXIPKEH-GBXCKJPGSA-N
2NE adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
2NE amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
2NE imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
2NE phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
2NE phosphate F5 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
2NE purine F6 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
2NE pyrimidine F7 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
2NE ribose F8 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2NE C02 S1 1
2NE C04 S1 1
2NE O05 S1 1
2NE P06 S1 1
2NE O08 S1 1
2NE O09 S1 1
2NE P10 S1 1
2NE O12 S1 1
2NE O13 S1 1
2NE C14 S1 1
2NE C15 S1 1
2NE O16 S1 1
2NE C17 S1 1
2NE C18 S1 1
2NE C20 S1 1
2NE N26 S1 1
2NE C27 S1 1
2NE N28 S1 1
2NE C29 S1 1
2NE C30 S1 1
2NE N32 S1 1
2NE C33 S1 1
2NE N34 S1 1
2NE C35 S1 1
2NE C36 S1 1
2NE C38 S1 1
2NE O39 S1 1
2NE N40 S1 1
2NE C41 S1 1
2NE C42 S1 1
2NE C43 S1 1
2NE O44 S1 1
2NE N45 S1 1
2NE C46 S1 1
2NE C47 S1 1
2NE S48 S1 1
2NE C49 S1 1
2NE O50 S1 1
2NE C51 S1 1
2NE C52 S1 1
2NE C54 S1 1
2NE C55 S1 1
2NE C56 S1 1
2NE C57 S1 1
2NE N32 F1 1
2NE C30 F1 1
2NE C29 F1 1
2NE C35 F1 1
2NE N34 F1 1
2NE C33 F1 1
2NE N26 F1 1
2NE C27 F1 1
2NE N28 F1 1
2NE N31 F1 1
2NE N40 F2 1
2NE C38 F2 1
2NE O39 F2 1
2NE C36 F2 1
2NE N45 F2 2
2NE C43 F2 2
2NE O44 F2 2
2NE C42 F2 2
2NE C29 F3 1
2NE C35 F3 1
2NE N26 F3 1
2NE C27 F3 1
2NE N28 F3 1
2NE C51 F4 1
2NE C57 F4 1
2NE C56 F4 1
2NE C55 F4 1
2NE C54 F4 1
2NE C52 F4 1
2NE O05 F5 1
2NE P06 F5 1
2NE O08 F5 1
2NE O09 F5 1
2NE O07 F5 1
2NE O09 F5 2
2NE P10 F5 2
2NE O12 F5 2
2NE O13 F5 2
2NE O11 F5 2
2NE O21 F5 3
2NE P22 F5 3
2NE O23 F5 3
2NE O24 F5 3
2NE O25 F5 3
2NE N28 F6 1
2NE C27 F6 1
2NE N26 F6 1
2NE C35 F6 1
2NE C29 F6 1
2NE C30 F6 1
2NE N32 F6 1
2NE C33 F6 1
2NE N34 F6 1
2NE C29 F7 1
2NE C30 F7 1
2NE N32 F7 1
2NE C33 F7 1
2NE N34 F7 1
2NE C35 F7 1
2NE C18 F8 1
2NE C20 F8 1
2NE C15 F8 1
2NE O16 F8 1
2NE C17 F8 1
2NE C14 F8 1
2NE O13 F8 1
2NE O21 F8 1
2NE O19 F8 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2NE
_pdbe_chem_comp_rdkit_properties.exactmw 887.136
_pdbe_chem_comp_rdkit_properties.amw 887.648
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 25
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 11
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 30
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 24
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 57
_pdbe_chem_comp_rdkit_properties.NumAtoms 97
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 29
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 383.308
_pdbe_chem_comp_rdkit_properties.tpsa 383.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.642
_pdbe_chem_comp_rdkit_properties.CrippenMR 190.622
_pdbe_chem_comp_rdkit_properties.chi0v 29.729
_pdbe_chem_comp_rdkit_properties.chi1v 18.423
_pdbe_chem_comp_rdkit_properties.chi2v 8.459
_pdbe_chem_comp_rdkit_properties.chi3v 8.459
_pdbe_chem_comp_rdkit_properties.chi4v 5.606
_pdbe_chem_comp_rdkit_properties.chi0n 66.229
_pdbe_chem_comp_rdkit_properties.chi1n 32.372
_pdbe_chem_comp_rdkit_properties.chi2n 5.240
_pdbe_chem_comp_rdkit_properties.chi3n 5.240
_pdbe_chem_comp_rdkit_properties.chi4n 3.097
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.420
_pdbe_chem_comp_rdkit_properties.kappa1 15.881
_pdbe_chem_comp_rdkit_properties.kappa2 19.100
_pdbe_chem_comp_rdkit_properties.kappa3 13.037
_pdbe_chem_comp_rdkit_properties.Phi 5.321
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2NE UniChem PDBe 2NE
2NE UniChem ChEBI 32587
2NE UniChem ZINC ZINC000096068394
2NE UniChem SureChEMBL SCHEMBL9949835
2NE UniChem HMDB HMDB0011636
2NE UniChem LipidMaps LMFA07050367
2NE UniChem BRENDA 10777
2NE UniChem BRENDA 192000
2NE UniChem BRENDA 247698
2NE UniChem BRENDA 3891
2NE UniChem BRENDA 4434
2NE UniChem BRENDA 56293
2NE UniChem PubChem 11966295
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2NE C01 2.599 0.469 -2.106 ETKDGv3 1
2NE C02 1.472 1.019 -3.011 ETKDGv3 2
2NE C03 0.860 2.270 -2.333 ETKDGv3 3
2NE C04 0.367 -0.064 -3.111 ETKDGv3 4
2NE O05 0.864 -1.220 -3.749 ETKDGv3 5
2NE P06 -0.199 -2.513 -3.421 ETKDGv3 6
2NE O07 -1.797 -2.029 -3.720 ETKDGv3 7
2NE O08 0.151 -3.668 -4.332 ETKDGv3 8
2NE O09 0.020 -2.985 -1.799 ETKDGv3 9
2NE P10 -1.317 -3.937 -1.341 ETKDGv3 10
2NE O11 -0.982 -4.658 0.154 ETKDGv3 11
2NE O12 -1.565 -5.033 -2.355 ETKDGv3 12
2NE O13 -2.719 -2.977 -1.197 ETKDGv3 13
2NE C14 -2.453 -1.950 -0.271 ETKDGv3 14
2NE C15 -3.716 -1.104 -0.073 ETKDGv3 15
2NE O16 -4.766 -1.933 0.382 ETKDGv3 16
2NE C17 -5.102 -1.531 1.692 ETKDGv3 17
2NE C18 -4.027 -0.587 2.209 ETKDGv3 18
2NE O19 -4.573 0.375 3.075 ETKDGv3 19
2NE C20 -3.485 0.023 0.942 ETKDGv3 20
2NE O21 -4.256 1.159 0.592 ETKDGv3 21
2NE P22 -3.285 2.276 -0.262 ETKDGv3 22
2NE O23 -4.124 3.484 -0.608 ETKDGv3 23
2NE O24 -1.979 2.771 0.697 ETKDGv3 24
2NE O25 -2.709 1.584 -1.694 ETKDGv3 25
2NE N26 -5.230 -2.704 2.555 ETKDGv3 26
2NE C27 -4.335 -3.837 2.600 ETKDGv3 27
2NE N28 -4.364 -4.522 3.714 ETKDGv3 28
2NE C29 -5.314 -3.858 4.535 ETKDGv3 29
2NE C30 -5.626 -4.051 5.816 ETKDGv3 30
2NE N31 -5.074 -5.127 6.575 ETKDGv3 31
2NE N32 -6.530 -3.102 6.429 ETKDGv3 32
2NE C33 -6.989 -2.069 5.760 ETKDGv3 33
2NE N34 -6.597 -1.851 4.384 ETKDGv3 34
2NE C35 -5.831 -2.742 3.833 ETKDGv3 35
2NE C36 2.047 1.356 -4.435 ETKDGv3 36
2NE O37 1.026 1.588 -5.376 ETKDGv3 37
2NE C38 3.044 2.501 -4.431 ETKDGv3 38
2NE O39 2.665 3.666 -4.733 ETKDGv3 39
2NE N40 4.409 2.266 -4.056 ETKDGv3 40
2NE C41 5.403 3.334 -3.933 ETKDGv3 41
2NE C42 5.088 4.293 -2.773 ETKDGv3 42
2NE C43 4.786 3.588 -1.480 ETKDGv3 43
2NE O44 3.705 3.840 -0.881 ETKDGv3 44
2NE N45 5.722 2.660 -0.912 ETKDGv3 45
2NE C46 5.438 1.912 0.313 ETKDGv3 46
2NE C47 5.574 2.816 1.537 ETKDGv3 47
2NE S48 5.343 1.860 3.075 ETKDGv3 48
2NE C49 3.550 2.005 3.105 ETKDGv3 49
2NE O50 3.039 3.052 3.586 ETKDGv3 50
2NE C51 2.673 0.950 2.550 ETKDGv3 51
2NE C52 2.931 -0.507 2.785 ETKDGv3 52
2NE O53 3.906 -0.953 3.677 ETKDGv3 53
2NE C54 2.173 -1.424 2.166 ETKDGv3 54
2NE C55 1.035 -1.012 1.325 ETKDGv3 55
2NE C56 0.753 0.284 1.174 ETKDGv3 56
2NE C57 1.612 1.308 1.800 ETKDGv3 57
2NE H1 3.342 1.254 -1.879 ETKDGv3 58
2NE H2 3.123 -0.381 -2.593 ETKDGv3 59
2NE H3 2.195 0.108 -1.140 ETKDGv3 60
2NE H4 -0.019 2.646 -2.896 ETKDGv3 61
2NE H5 1.601 3.091 -2.256 ETKDGv3 62
2NE H6 0.521 2.032 -1.304 ETKDGv3 63
2NE H7 -0.496 0.334 -3.690 ETKDGv3 64
2NE H8 0.015 -0.283 -2.076 ETKDGv3 65
2NE H9 -1.808 -1.769 -4.675 ETKDGv3 66
2NE H10 -0.090 -5.071 0.041 ETKDGv3 67
2NE H11 -1.646 -1.288 -0.652 ETKDGv3 68
2NE H12 -2.150 -2.371 0.715 ETKDGv3 69
2NE H13 -4.005 -0.678 -1.059 ETKDGv3 70
2NE H14 -6.082 -1.004 1.648 ETKDGv3 71
2NE H15 -3.223 -1.164 2.727 ETKDGv3 72
2NE H16 -3.804 0.862 3.472 ETKDGv3 73
2NE H17 -2.405 0.251 1.101 ETKDGv3 74
2NE H18 -2.383 3.011 1.569 ETKDGv3 75
2NE H19 -1.911 1.069 -1.420 ETKDGv3 76
2NE H20 -3.672 -4.095 1.786 ETKDGv3 77
2NE H21 -4.415 -5.812 6.142 ETKDGv3 78
2NE H22 -5.330 -5.240 7.580 ETKDGv3 79
2NE H23 -7.657 -1.370 6.245 ETKDGv3 80
2NE H24 2.598 0.461 -4.798 ETKDGv3 81
2NE H25 0.518 2.391 -5.093 ETKDGv3 82
2NE H26 4.729 1.282 -3.906 ETKDGv3 83
2NE H27 5.450 3.906 -4.884 ETKDGv3 84
2NE H28 6.405 2.882 -3.773 ETKDGv3 85
2NE H29 4.228 4.938 -3.054 ETKDGv3 86
2NE H30 5.960 4.964 -2.615 ETKDGv3 87
2NE H31 6.616 2.463 -1.416 ETKDGv3 88
2NE H32 6.162 1.072 0.401 ETKDGv3 89
2NE H33 4.417 1.479 0.265 ETKDGv3 90
2NE H34 4.851 3.658 1.490 ETKDGv3 91
2NE H35 6.598 3.248 1.554 ETKDGv3 92
2NE H36 4.377 -0.335 4.324 ETKDGv3 93
2NE H37 2.354 -2.479 2.328 ETKDGv3 94
2NE H38 0.419 -1.763 0.849 ETKDGv3 95
2NE H39 -0.086 0.587 0.562 ETKDGv3 96
2NE H40 1.394 2.353 1.610 ETKDGv3 97
#