data_2OV
#
_chem_comp.id 2OV
_chem_comp.name "(1R,2R,3r,4S,5S,6s)-3,6-bis(benzyloxy)cyclohexane-1,2,4,5-tetrayl tetrakis[dihydrogen (phosphate)]"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H28 O18 P4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-12-18
_chem_comp.pdbx_modified_date 2014-03-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 680.321
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2OV
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4NZO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2OV CD5 CD5 C 0 1 Y N N N N N -9.204 14.836 12.459 4.766 2.819 -0.382 CD5 2OV 1
2OV CE5 CE5 C 0 1 Y N N N N N -10.164 14.447 11.530 5.796 3.413 0.323 CE5 2OV 2
2OV CZ5 CZ5 C 0 1 Y N N N N N -9.970 14.726 10.184 6.508 2.682 1.255 CZ5 2OV 3
2OV CE7 CE7 C 0 1 Y N N N N N -8.832 15.408 9.752 6.190 1.356 1.483 CE7 2OV 4
2OV CD7 CD7 C 0 1 Y N N N N N -7.876 15.805 10.685 5.159 0.762 0.779 CD7 2OV 5
2OV CB5 CB5 C 0 1 Y N N N N N -8.054 15.505 12.038 4.444 1.495 -0.149 CB5 2OV 6
2OV CA5 CA5 C 0 1 N N N N N N -7.111 15.901 12.982 3.320 0.847 -0.917 CA5 2OV 7
2OV O15 O15 O 0 1 N N N N N N -7.677 16.941 13.776 2.096 1.011 -0.198 O15 2OV 8
2OV C5 C5 C 0 1 N N N N N N -6.751 17.475 14.736 0.961 0.429 -0.843 C5 2OV 9
2OV C6 C6 C 0 1 N N R N N N -7.219 17.068 16.147 -0.295 1.225 -0.482 C6 2OV 10
2OV O16 O16 O 0 1 N N N N N N -6.976 15.646 16.333 -0.142 2.578 -0.916 O16 2OV 11
2OV PA6 PA6 P 0 1 N N N N N N -8.117 14.575 16.794 -0.188 3.833 0.093 PA6 2OV 12
2OV O36 O36 O 0 1 N N N N N N -8.209 13.550 15.550 -1.449 3.798 0.866 O36 2OV 13
2OV O46 O46 O 0 1 N N N N N N -9.410 15.271 16.924 1.063 3.756 1.103 O46 2OV 14
2OV O26 O26 O 0 1 N N N N N N -7.593 13.823 17.956 -0.113 5.202 -0.751 O26 2OV 15
2OV C1 C1 C 0 1 N N R N N N -6.480 17.824 17.259 -1.510 0.603 -1.173 C1 2OV 16
2OV O11 O11 O 0 1 N N N N N N -7.151 17.499 18.492 -2.682 1.346 -0.836 O11 2OV 17
2OV PA1 PA1 P 0 1 N N N N N N -6.390 17.027 19.823 -3.602 2.079 -1.935 PA1 2OV 18
2OV O41 O41 O 0 1 N N N N N N -7.467 17.022 20.831 -4.900 2.705 -1.217 O41 2OV 19
2OV O31 O31 O 0 1 N N N N N N -5.336 18.051 19.984 -2.760 3.255 -2.642 O31 2OV 20
2OV O21 O21 O 0 1 N N N N N N -5.905 15.680 19.433 -4.029 1.096 -2.956 O21 2OV 21
2OV C4 C4 C 0 1 N N S N N N -6.693 18.990 14.549 0.797 -1.020 -0.379 C4 2OV 22
2OV O14 O14 O 0 1 N N N N N N -6.108 19.318 13.260 1.970 -1.763 -0.717 O14 2OV 23
2OV PA4 PA4 P 0 1 N N N N N N -6.817 20.227 12.130 2.890 -2.496 0.383 PA4 2OV 24
2OV O44 O44 O 0 1 N N N N N N -7.428 19.152 11.289 3.317 -1.513 1.403 O44 2OV 25
2OV O34 O34 O 0 1 N N N N N N -7.740 21.143 12.800 2.048 -3.672 1.089 O34 2OV 26
2OV O24 O24 O 0 1 N N N N N N -5.652 20.907 11.533 4.188 -3.122 -0.335 O24 2OV 27
2OV C3 C3 C 0 1 N N S N N N -5.804 19.576 15.616 -0.418 -1.642 -1.070 C3 2OV 28
2OV O13 O13 O 0 1 N N N N N N -5.506 20.980 15.250 -0.571 -2.995 -0.636 O13 2OV 29
2OV PA3 PA3 P 0 1 N N N N N N -4.157 21.509 14.420 -0.524 -4.250 -1.645 PA3 2OV 30
2OV O43 O43 O 0 1 N N N N N N -4.497 22.925 14.184 -0.599 -5.619 -0.801 O43 2OV 31
2OV O33 O33 O 0 1 N N N N N N -3.167 21.235 15.457 -1.775 -4.172 -2.655 O33 2OV 32
2OV O23 O23 O 0 1 N N N N N N -3.836 20.928 13.117 0.737 -4.215 -2.418 O23 2OV 33
2OV C2 C2 C 0 1 N N N N N N -6.486 19.341 16.993 -1.673 -0.846 -0.709 C2 2OV 34
2OV O12 O12 O 0 1 N N N N N N -7.863 19.797 17.027 -1.864 -0.874 0.707 O12 2OV 35
2OV CA2 CA2 C 0 1 N N N N N N -8.267 20.187 18.332 -3.233 -0.794 1.111 CA2 2OV 36
2OV CB2 CB2 C 0 1 Y N N N N N -9.653 19.938 18.411 -3.315 -0.832 2.615 CB2 2OV 37
2OV CD2 CD2 C 0 1 Y N N N N N -10.551 20.969 18.117 -3.427 -2.044 3.271 CD2 2OV 38
2OV CE2 CE2 C 0 1 Y N N N N N -11.927 20.754 18.195 -3.503 -2.078 4.651 CE2 2OV 39
2OV CZ CZ C 0 1 Y N N N N N -12.423 19.507 18.573 -3.467 -0.901 5.375 CZ 2OV 40
2OV CE1 CE1 C 0 1 Y N N N N N -11.537 18.475 18.876 -3.355 0.311 4.719 CE1 2OV 41
2OV CD1 CD1 C 0 1 Y N N N N N -10.157 18.687 18.795 -3.274 0.345 3.339 CD1 2OV 42
2OV H1 H1 H 0 1 N N N N N N -9.349 14.620 13.507 4.210 3.390 -1.110 H1 2OV 43
2OV H2 H2 H 0 1 N N N N N N -11.055 13.931 11.854 6.045 4.449 0.144 H2 2OV 44
2OV H3 H3 H 0 1 N N N N N N -10.709 14.411 9.462 7.313 3.146 1.805 H3 2OV 45
2OV H4 H4 H 0 1 N N N N N N -8.693 15.626 8.703 6.746 0.784 2.211 H4 2OV 46
2OV H5 H5 H 0 1 N N N N N N -6.998 16.344 10.362 4.911 -0.274 0.957 H5 2OV 47
2OV H6 H6 H 0 1 N N N N N N -6.846 15.047 13.623 3.232 1.316 -1.897 H6 2OV 48
2OV H7 H7 H 0 1 N N N N N N -6.209 16.272 12.473 3.530 -0.216 -1.040 H7 2OV 49
2OV H8 H8 H 0 1 N N N N N N -5.748 17.058 14.565 1.107 0.450 -1.923 H8 2OV 50
2OV H9 H9 H 0 1 N N N N N N -8.296 17.276 16.234 -0.440 1.204 0.598 H9 2OV 51
2OV H10 H10 H 0 1 N N N N N N -10.005 14.963 16.251 1.925 3.774 0.664 H10 2OV 52
2OV H11 H11 H 0 1 N N N N N N -7.434 12.921 17.704 -0.136 6.001 -0.206 H11 2OV 53
2OV H12 H12 H 0 1 N N N N N N -5.437 17.475 17.293 -1.364 0.624 -2.253 H12 2OV 54
2OV H13 H13 H 0 1 N N N N N N -7.675 16.126 21.068 -5.501 3.163 -1.821 H13 2OV 55
2OV H14 H14 H 0 1 N N N N N N -4.487 17.664 19.804 -2.448 3.937 -2.031 H14 2OV 56
2OV H15 H15 H 0 1 N N N N N N -7.706 19.411 14.634 0.652 -1.041 0.701 H15 2OV 57
2OV H16 H16 H 0 1 N N N N N N -8.634 20.903 12.588 1.736 -4.354 0.479 H16 2OV 58
2OV H17 H17 H 0 1 N N N N N N -4.936 20.916 12.157 4.789 -3.580 0.269 H17 2OV 59
2OV H18 H18 H 0 1 N N N N N N -4.859 19.012 15.617 -0.272 -1.621 -2.150 H18 2OV 60
2OV H19 H19 H 0 1 N N N N N N -4.427 23.118 13.256 -0.576 -6.418 -1.346 H19 2OV 61
2OV H20 H20 H 0 1 N N N N N N -2.464 20.710 15.093 -2.637 -4.191 -2.216 H20 2OV 62
2OV H21 H21 H 0 1 N N N N N N -5.897 19.845 17.773 -2.539 -1.289 -1.201 H21 2OV 63
2OV H22 H22 H 0 1 N N N N N N -7.731 19.596 19.089 -3.665 0.137 0.746 H22 2OV 64
2OV H23 H23 H 0 1 N N N N N N -8.063 21.256 18.490 -3.783 -1.638 0.696 H23 2OV 65
2OV H24 H24 H 0 1 N N N N N N -10.176 21.939 17.827 -3.455 -2.963 2.706 H24 2OV 66
2OV H25 H25 H 0 1 N N N N N N -12.611 21.557 17.962 -3.591 -3.025 5.163 H25 2OV 67
2OV H26 H26 H 0 1 N N N N N N -13.489 19.342 18.631 -3.527 -0.928 6.453 H26 2OV 68
2OV H27 H27 H 0 1 N N N N N N -11.917 17.509 19.174 -3.327 1.230 5.284 H27 2OV 69
2OV H28 H28 H 0 1 N N N N N N -9.476 17.883 19.030 -3.182 1.291 2.827 H28 2OV 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2OV CE7 CZ5 DOUB Y N 1
2OV CE7 CD7 SING Y N 2
2OV CZ5 CE5 SING Y N 3
2OV CD7 CB5 DOUB Y N 4
2OV O44 PA4 DOUB N N 5
2OV CE5 CD5 DOUB Y N 6
2OV O24 PA4 SING N N 7
2OV CB5 CD5 SING Y N 8
2OV CB5 CA5 SING N N 9
2OV PA4 O34 SING N N 10
2OV PA4 O14 SING N N 11
2OV CA5 O15 SING N N 12
2OV O23 PA3 DOUB N N 13
2OV O14 C4 SING N N 14
2OV O15 C5 SING N N 15
2OV O43 PA3 SING N N 16
2OV PA3 O13 SING N N 17
2OV PA3 O33 SING N N 18
2OV C4 C5 SING N N 19
2OV C4 C3 SING N N 20
2OV C5 C6 SING N N 21
2OV O13 C3 SING N N 22
2OV O36 PA6 DOUB N N 23
2OV C3 C2 SING N N 24
2OV C6 O16 SING N N 25
2OV C6 C1 SING N N 26
2OV O16 PA6 SING N N 27
2OV PA6 O46 SING N N 28
2OV PA6 O26 SING N N 29
2OV C2 O12 SING N N 30
2OV C2 C1 SING N N 31
2OV O12 CA2 SING N N 32
2OV C1 O11 SING N N 33
2OV CD2 CE2 DOUB Y N 34
2OV CD2 CB2 SING Y N 35
2OV CE2 CZ SING Y N 36
2OV CA2 CB2 SING N N 37
2OV CB2 CD1 DOUB Y N 38
2OV O11 PA1 SING N N 39
2OV CZ CE1 DOUB Y N 40
2OV CD1 CE1 SING Y N 41
2OV O21 PA1 DOUB N N 42
2OV PA1 O31 SING N N 43
2OV PA1 O41 SING N N 44
2OV CD5 H1 SING N N 45
2OV CE5 H2 SING N N 46
2OV CZ5 H3 SING N N 47
2OV CE7 H4 SING N N 48
2OV CD7 H5 SING N N 49
2OV CA5 H6 SING N N 50
2OV CA5 H7 SING N N 51
2OV C5 H8 SING N N 52
2OV C6 H9 SING N N 53
2OV O46 H10 SING N N 54
2OV O26 H11 SING N N 55
2OV C1 H12 SING N N 56
2OV O41 H13 SING N N 57
2OV O31 H14 SING N N 58
2OV C4 H15 SING N N 59
2OV O34 H16 SING N N 60
2OV O24 H17 SING N N 61
2OV C3 H18 SING N N 62
2OV O43 H19 SING N N 63
2OV O33 H20 SING N N 64
2OV C2 H21 SING N N 65
2OV CA2 H22 SING N N 66
2OV CA2 H23 SING N N 67
2OV CD2 H24 SING N N 68
2OV CE2 H25 SING N N 69
2OV CZ H26 SING N N 70
2OV CE1 H27 SING N N 71
2OV CD1 H28 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2OV SMILES ACDLabs 12.01 O=P(O)(O)OC3C(OCc1ccccc1)C(OP(=O)(O)O)C(OP(=O)(O)O)C(OCc2ccccc2)C3OP(=O)(O)O
2OV InChI InChI 1.03 InChI=1S/C20H28O18P4/c21-39(22,23)35-17-15(33-11-13-7-3-1-4-8-13)18(36-40(24,25)26)20(38-42(30,31)32)16(19(17)37-41(27,28)29)34-12-14-9-5-2-6-10-14/h1-10,15-20H,11-12H2,(H2,21,22,23)(H2,24,25,26)(H2,27,28,29)(H2,30,31,32)/t15-,16+,17-,18+,19-,20+
2OV InChIKey InChI 1.03 ZTUVPCVFCISGDF-YUNYCSSDSA-N
2OV SMILES_CANONICAL CACTVS 3.385 O[P](O)(=O)O[C@@H]1[C@@H](OCc2ccccc2)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@@H](OCc3ccccc3)[C@H]1O[P](O)(O)=O
2OV SMILES CACTVS 3.385 O[P](O)(=O)O[CH]1[CH](OCc2ccccc2)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](OCc3ccccc3)[CH]1O[P](O)(O)=O
2OV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)COC2[C@@H]([C@H](C([C@H]([C@@H]2OP(=O)(O)O)OP(=O)(O)O)OCc3ccccc3)OP(=O)(O)O)OP(=O)(O)O
2OV SMILES "OpenEye OEToolkits" 1.7.6 c1ccc(cc1)COC2C(C(C(C(C2OP(=O)(O)O)OP(=O)(O)O)OCc3ccccc3)OP(=O)(O)O)OP(=O)(O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2OV "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2R,3r,4S,5S,6s)-3,6-bis(benzyloxy)cyclohexane-1,2,4,5-tetrayl tetrakis[dihydrogen (phosphate)]"
2OV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(1R,3S,4S,6R)-2,5-bis(phenylmethoxy)-3,4,6-triphosphonooxy-cyclohexyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2OV 'Create component' 2013-12-18 RCSB
2OV 'Other modification' 2014-03-26 RCSB
2OV 'Initial release' 2014-04-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2OV CD5 C 4.096 4.957 1
2OV CE5 C 5.400 5.700 2
2OV CZ5 C 6.699 4.946 3
2OV CE7 C 6.692 3.447 4
2OV CD7 C 5.391 2.701 5
2OV CB5 C 4.095 3.457 6
2OV CA5 C 3.001 2.719 7
2OV O15 O 3.059 1.181 8
2OV C5 C 1.563 0.362 9
2OV C6 C 0.276 1.137 10
2OV O16 O 0.195 2.594 11
2OV PA6 P 1.335 3.252 12
2OV O36 O 2.658 3.868 13
2OV O46 O 0.654 4.590 14
2OV O26 O 1.830 1.942 15
2OV C1 C -1.035 0.408 16
2OV O11 O -2.361 1.195 17
2OV PA1 P -2.426 2.745 18
2OV O41 O -0.981 2.847 19
2OV O31 O -3.916 2.676 20
2OV O21 O -2.499 4.235 21
2OV C4 C 1.538 -1.137 22
2OV O14 O 2.843 -1.906 23
2OV PA4 P 2.876 -3.420 24
2OV O44 O 2.919 -4.916 25
2OV O34 O 4.374 -3.380 26
2OV O24 O 1.394 -3.471 27
2OV C3 C 0.222 -1.860 28
2OV O13 O 0.198 -3.367 29
2OV PA3 P -1.106 -4.169 30
2OV O43 O -0.311 -5.437 31
2OV O33 O -1.900 -2.934 32
2OV O23 O -2.370 -4.965 33
2OV C2 C -1.066 -1.090 34
2OV O12 O -2.334 -1.812 35
2OV CA2 C -3.633 -1.102 36
2OV CB2 C -4.934 -1.904 37
2OV CD2 C -6.241 -1.167 38
2OV CE2 C -7.531 -1.926 39
2OV CZ C -7.522 -3.428 40
2OV CE1 C -6.215 -4.165 41
2OV CD1 C -4.923 -3.405 42
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2OV CE7 CZ5 DOUBLE NONE 1
2OV CE7 CD7 SINGLE NONE 2
2OV CZ5 CE5 SINGLE NONE 3
2OV CD7 CB5 DOUBLE NONE 4
2OV O44 PA4 DOUBLE NONE 5
2OV CE5 CD5 DOUBLE NONE 6
2OV O24 PA4 SINGLE NONE 7
2OV CB5 CD5 SINGLE NONE 8
2OV CB5 CA5 SINGLE NONE 9
2OV PA4 O34 SINGLE NONE 10
2OV PA4 O14 SINGLE NONE 11
2OV CA5 O15 SINGLE NONE 12
2OV O23 PA3 DOUBLE NONE 13
2OV C4 O14 SINGLE BEGINDASH 14
2OV C5 O15 SINGLE BEGINWEDGE 15
2OV O43 PA3 SINGLE NONE 16
2OV PA3 O13 SINGLE NONE 17
2OV PA3 O33 SINGLE NONE 18
2OV C4 C5 SINGLE NONE 19
2OV C4 C3 SINGLE NONE 20
2OV C5 C6 SINGLE NONE 21
2OV C3 O13 SINGLE BEGINWEDGE 22
2OV O36 PA6 DOUBLE NONE 23
2OV C3 C2 SINGLE NONE 24
2OV C6 O16 SINGLE BEGINDASH 25
2OV C6 C1 SINGLE NONE 26
2OV O16 PA6 SINGLE NONE 27
2OV PA6 O46 SINGLE NONE 28
2OV PA6 O26 SINGLE NONE 29
2OV C2 O12 SINGLE BEGINWEDGE 30
2OV C2 C1 SINGLE NONE 31
2OV O12 CA2 SINGLE NONE 32
2OV C1 O11 SINGLE BEGINWEDGE 33
2OV CD2 CE2 DOUBLE NONE 34
2OV CD2 CB2 SINGLE NONE 35
2OV CE2 CZ SINGLE NONE 36
2OV CA2 CB2 SINGLE NONE 37
2OV CB2 CD1 DOUBLE NONE 38
2OV O11 PA1 SINGLE NONE 39
2OV CZ CE1 DOUBLE NONE 40
2OV CD1 CE1 SINGLE NONE 41
2OV O21 PA1 DOUBLE NONE 42
2OV PA1 O31 SINGLE NONE 43
2OV PA1 O41 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2OV MurckoScaffold S1 scaffold 'c1ccc(CO[C@H]2CC[C@@H](OCc3ccccc3)CC2)cc1' InChI=1S/C20H24O2/c1-3-7-17(8-4-1)15-21-19-11-13-20(14-12-19)22-16-18-9-5-2-6-10-18/h1-10,19-20H,11-16H2/t19-,20+ VPUVXJLDKQPOGL-BGYRXZFFSA-N
2OV cyclohexane F1 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
2OV phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
2OV phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2OV CD5 S1 1
2OV CE5 S1 1
2OV CZ5 S1 1
2OV CE7 S1 1
2OV CD7 S1 1
2OV CB5 S1 1
2OV CA5 S1 1
2OV O15 S1 1
2OV C5 S1 1
2OV C6 S1 1
2OV C1 S1 1
2OV C4 S1 1
2OV C3 S1 1
2OV C2 S1 1
2OV O12 S1 1
2OV CA2 S1 1
2OV CB2 S1 1
2OV CD2 S1 1
2OV CE2 S1 1
2OV CZ S1 1
2OV CE1 S1 1
2OV CD1 S1 1
2OV C5 F1 1
2OV C4 F1 1
2OV C3 F1 1
2OV C2 F1 1
2OV C1 F1 1
2OV C6 F1 1
2OV CD5 F2 1
2OV CE5 F2 1
2OV CZ5 F2 1
2OV CE7 F2 1
2OV CD7 F2 1
2OV CB5 F2 1
2OV CB2 F2 2
2OV CD2 F2 2
2OV CE2 F2 2
2OV CZ F2 2
2OV CE1 F2 2
2OV CD1 F2 2
2OV O16 F3 1
2OV PA6 F3 1
2OV O36 F3 1
2OV O46 F3 1
2OV O26 F3 1
2OV O11 F3 2
2OV PA1 F3 2
2OV O21 F3 2
2OV O31 F3 2
2OV O41 F3 2
2OV O14 F3 3
2OV PA4 F3 3
2OV O44 F3 3
2OV O24 F3 3
2OV O34 F3 3
2OV O13 F3 4
2OV PA3 F3 4
2OV O23 F3 4
2OV O43 F3 4
2OV O33 F3 4
#
_pdbe_chem_comp_rdkit_properties.comp_id 2OV
_pdbe_chem_comp_rdkit_properties.exactmw 680.023
_pdbe_chem_comp_rdkit_properties.amw 680.322
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 18
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 22
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 18
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 42
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 22
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.400
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 277.668
_pdbe_chem_comp_rdkit_properties.tpsa 285.500
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.973
_pdbe_chem_comp_rdkit_properties.CrippenMR 137.174
_pdbe_chem_comp_rdkit_properties.chi0v 22.715
_pdbe_chem_comp_rdkit_properties.chi1v 15.397
_pdbe_chem_comp_rdkit_properties.chi2v 5.185
_pdbe_chem_comp_rdkit_properties.chi3v 5.185
_pdbe_chem_comp_rdkit_properties.chi4v 3.947
_pdbe_chem_comp_rdkit_properties.chi0n 47.137
_pdbe_chem_comp_rdkit_properties.chi1n 22.820
_pdbe_chem_comp_rdkit_properties.chi2n 3.560
_pdbe_chem_comp_rdkit_properties.chi3n 3.560
_pdbe_chem_comp_rdkit_properties.chi4n 2.389
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.200
_pdbe_chem_comp_rdkit_properties.kappa1 12.893
_pdbe_chem_comp_rdkit_properties.kappa2 14.269
_pdbe_chem_comp_rdkit_properties.kappa3 11.712
_pdbe_chem_comp_rdkit_properties.Phi 4.380
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2OV UniChem PDBe 2OV
2OV UniChem ZINC ZINC000263621363
2OV UniChem BRENDA 213731
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2OV CD5 -4.103 -1.602 1.377 ETKDGv3 1
2OV CE5 -4.946 -1.510 2.413 ETKDGv3 2
2OV CZ5 -5.962 -0.438 2.446 ETKDGv3 3
2OV CE7 -6.041 0.441 1.441 ETKDGv3 4
2OV CD7 -5.109 0.346 0.298 ETKDGv3 5
2OV CB5 -4.175 -0.621 0.265 ETKDGv3 6
2OV CA5 -3.218 -0.736 -0.893 ETKDGv3 7
2OV O15 -1.892 -0.889 -0.430 ETKDGv3 8
2OV C5 -1.315 0.353 -0.045 ETKDGv3 9
2OV C6 -0.233 0.756 -1.073 ETKDGv3 10
2OV O16 0.200 2.076 -0.789 ETKDGv3 11
2OV PA6 0.410 2.964 -2.233 ETKDGv3 12
2OV O36 1.438 2.298 -3.119 ETKDGv3 13
2OV O46 -1.062 3.075 -3.063 ETKDGv3 14
2OV O26 0.946 4.521 -1.847 ETKDGv3 15
2OV C1 0.978 -0.212 -1.029 ETKDGv3 16
2OV O11 0.588 -1.504 -1.464 ETKDGv3 17
2OV PA1 0.994 -1.735 -3.108 ETKDGv3 18
2OV O41 2.676 -1.737 -3.292 ETKDGv3 19
2OV O31 0.380 -3.225 -3.620 ETKDGv3 20
2OV O21 0.398 -0.640 -3.964 ETKDGv3 21
2OV C4 -0.741 0.217 1.386 ETKDGv3 22
2OV O14 -0.339 1.492 1.861 ETKDGv3 23
2OV PA4 -1.420 2.055 3.056 ETKDGv3 24
2OV O44 -0.967 3.419 3.523 ETKDGv3 25
2OV O34 -1.427 0.992 4.374 ETKDGv3 26
2OV O24 -2.981 2.184 2.415 ETKDGv3 27
2OV C3 0.478 -0.734 1.429 ETKDGv3 28
2OV O13 0.070 -2.064 1.154 ETKDGv3 29
2OV PA3 -0.062 -2.957 2.603 ETKDGv3 30
2OV O43 -1.127 -2.191 3.673 ETKDGv3 31
2OV O33 1.462 -3.098 3.328 ETKDGv3 32
2OV O23 -0.590 -4.337 2.283 ETKDGv3 33
2OV C2 1.548 -0.301 0.404 ETKDGv3 34
2OV O12 2.618 -1.237 0.422 ETKDGv3 35
2OV CA2 3.847 -0.628 0.775 ETKDGv3 36
2OV CB2 4.421 0.134 -0.391 ETKDGv3 37
2OV CD2 4.286 1.612 -0.457 ETKDGv3 38
2OV CE2 4.714 2.281 -1.534 ETKDGv3 39
2OV CZ 5.336 1.553 -2.659 ETKDGv3 40
2OV CE1 5.470 0.223 -2.602 ETKDGv3 41
2OV CD1 4.987 -0.521 -1.420 ETKDGv3 42
2OV H1 -3.361 -2.391 1.359 ETKDGv3 43
2OV H2 -4.887 -2.221 3.227 ETKDGv3 44
2OV H3 -6.643 -0.367 3.285 ETKDGv3 45
2OV H4 -6.786 1.227 1.463 ETKDGv3 46
2OV H5 -5.187 1.070 -0.504 ETKDGv3 47
2OV H6 -3.488 -1.648 -1.466 ETKDGv3 48
2OV H7 -3.308 0.115 -1.609 ETKDGv3 49
2OV H8 -2.063 1.182 -0.008 ETKDGv3 50
2OV H9 -0.722 0.672 -2.071 ETKDGv3 51
2OV H10 -1.712 3.380 -2.382 ETKDGv3 52
2OV H11 0.267 4.871 -1.216 ETKDGv3 53
2OV H12 1.797 0.218 -1.651 ETKDGv3 54
2OV H13 2.991 -2.463 -2.698 ETKDGv3 55
2OV H14 0.740 -3.882 -2.971 ETKDGv3 56
2OV H15 -1.533 -0.255 2.012 ETKDGv3 57
2OV H16 -0.471 0.815 4.561 ETKDGv3 58
2OV H17 -3.416 1.322 2.634 ETKDGv3 59
2OV H18 0.959 -0.623 2.432 ETKDGv3 60
2OV H19 -1.069 -2.718 4.509 ETKDGv3 61
2OV H20 2.062 -3.391 2.597 ETKDGv3 62
2OV H21 1.865 0.730 0.692 ETKDGv3 63
2OV H22 3.748 0.018 1.678 ETKDGv3 64
2OV H23 4.559 -1.431 1.063 ETKDGv3 65
2OV H24 3.832 2.155 0.362 ETKDGv3 66
2OV H25 4.607 3.357 -1.584 ETKDGv3 67
2OV H26 5.682 2.098 -3.527 ETKDGv3 68
2OV H27 5.923 -0.313 -3.426 ETKDGv3 69
2OV H28 5.079 -1.600 -1.403 ETKDGv3 70
#