data_2Q0
#
_chem_comp.id 2Q0
_chem_comp.name (5~{Z})-5-[(4-hydroxyphenyl)methylidene]-3-(2-methylpropyl)-2-sulfanylidene-1,3-thiazolidin-4-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H15 N O2 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-12-29
_chem_comp.pdbx_modified_date 2020-02-12
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 293.404
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2Q0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4O24
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2Q0 CAA C1 C 0 1 N N N N N N 1.348 454.981 104.380 -3.689 1.959 1.075 CAA 2Q0 1
2Q0 CAR C2 C 0 1 N N N N N N 0.150 454.956 105.324 -4.233 0.610 0.602 CAR 2Q0 2
2Q0 CAB C3 C 0 1 N N N N N N -1.101 455.247 104.491 -5.739 0.724 0.359 CAB 2Q0 3
2Q0 CAK C4 C 0 1 N N N N N N 0.242 455.980 106.482 -3.535 0.206 -0.698 CAK 2Q0 4
2Q0 NAS N1 N 0 1 N N N N N N 0.256 457.446 106.131 -2.111 -0.020 -0.439 NAS 2Q0 5
2Q0 CAO C5 C 0 1 N N N N N N 1.019 458.244 105.344 -1.249 0.978 -0.542 CAO 2Q0 6
2Q0 OAC O1 O 0 1 N N N N N N 1.964 457.842 104.671 -1.587 2.106 -0.850 OAC 2Q0 7
2Q0 CAP C6 C 0 1 N N N N N N -0.697 458.148 106.757 -1.674 -1.236 -0.091 CAP 2Q0 8
2Q0 SAE S1 S 0 1 N N N N N N -1.856 457.483 107.848 -2.626 -2.645 0.101 SAE 2Q0 9
2Q0 SAL S2 S 0 1 N N N N N N -0.623 459.717 106.346 0.079 -1.108 0.134 SAL 2Q0 10
2Q0 CAQ C7 C 0 1 N N N N N N 0.676 459.536 105.327 0.146 0.622 -0.257 CAQ 2Q0 11
2Q0 CAF C8 C 0 1 N N N N N N 1.363 460.413 104.571 1.236 1.431 -0.284 CAF 2Q0 12
2Q0 CAN C9 C 0 1 Y N N N N N 1.091 461.787 104.463 2.579 0.859 -0.121 CAN 2Q0 13
2Q0 CAI C10 C 0 1 Y N N N N N 1.918 462.507 103.605 2.801 -0.498 -0.385 CAI 2Q0 14
2Q0 CAG C11 C 0 1 Y N N N N N 1.744 463.872 103.412 4.062 -1.029 -0.230 CAG 2Q0 15
2Q0 CAM C12 C 0 1 Y N N N N N 0.725 464.540 104.077 5.113 -0.220 0.187 CAM 2Q0 16
2Q0 OAD O2 O 0 1 N N N N N N 0.551 465.876 103.892 6.354 -0.749 0.338 OAD 2Q0 17
2Q0 CAH C13 C 0 1 Y N N N N N -0.113 463.838 104.935 4.898 1.128 0.449 CAH 2Q0 18
2Q0 CAJ C14 C 0 1 Y N N N N N 0.071 462.473 105.120 3.642 1.670 0.292 CAJ 2Q0 19
2Q0 H1 H1 H 0 1 N N N N N N 2.267 454.775 104.948 -3.877 2.714 0.311 H1 2Q0 20
2Q0 H2 H2 H 0 1 N N N N N N 1.218 454.214 103.602 -4.186 2.247 2.001 H2 2Q0 21
2Q0 H3 H3 H 0 1 N N N N N N 1.423 455.972 103.909 -2.616 1.878 1.248 H3 2Q0 22
2Q0 H4 H4 H 0 1 N N N N N N 0.060 453.948 105.756 -4.044 -0.145 1.365 H4 2Q0 23
2Q0 H5 H5 H 0 1 N N N N N N -1.987 455.237 105.143 -5.927 1.479 -0.405 H5 2Q0 24
2Q0 H6 H6 H 0 1 N N N N N N -1.005 456.236 104.019 -6.127 -0.237 0.022 H6 2Q0 25
2Q0 H7 H7 H 0 1 N N N N N N -1.210 454.478 103.712 -6.236 1.012 1.285 H7 2Q0 26
2Q0 H8 H8 H 0 1 N N N N N N -0.623 455.809 107.139 -3.984 -0.711 -1.082 H8 2Q0 27
2Q0 H9 H9 H 0 1 N N N N N N 1.169 455.767 107.034 -3.649 1.002 -1.434 H9 2Q0 28
2Q0 H10 H10 H 0 1 N N N N N N 2.194 460.027 103.999 1.115 2.495 -0.425 H10 2Q0 29
2Q0 H12 H12 H 0 1 N N N N N N 2.710 461.995 103.079 1.985 -1.127 -0.708 H12 2Q0 30
2Q0 H13 H13 H 0 1 N N N N N N 2.400 464.412 102.746 4.235 -2.076 -0.433 H13 2Q0 31
2Q0 H14 H14 H 0 1 N N N N N N -0.183 466.176 104.415 6.899 -0.709 -0.460 H14 2Q0 32
2Q0 H15 H15 H 0 1 N N N N N N -0.906 464.352 105.457 5.718 1.751 0.773 H15 2Q0 33
2Q0 H16 H16 H 0 1 N N N N N N -0.588 461.934 105.785 3.477 2.719 0.493 H16 2Q0 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2Q0 CAG CAI DOUB Y N 1
2Q0 CAG CAM SING Y N 2
2Q0 CAI CAN SING Y N 3
2Q0 OAD CAM SING N N 4
2Q0 CAM CAH DOUB Y N 5
2Q0 CAA CAR SING N N 6
2Q0 CAN CAF SING N N 7
2Q0 CAN CAJ DOUB Y N 8
2Q0 CAB CAR SING N N 9
2Q0 CAF CAQ DOUB N Z 10
2Q0 OAC CAO DOUB N N 11
2Q0 CAH CAJ SING Y N 12
2Q0 CAR CAK SING N N 13
2Q0 CAQ CAO SING N N 14
2Q0 CAQ SAL SING N N 15
2Q0 CAO NAS SING N N 16
2Q0 NAS CAK SING N N 17
2Q0 NAS CAP SING N N 18
2Q0 SAL CAP SING N N 19
2Q0 CAP SAE DOUB N N 20
2Q0 CAA H1 SING N N 21
2Q0 CAA H2 SING N N 22
2Q0 CAA H3 SING N N 23
2Q0 CAR H4 SING N N 24
2Q0 CAB H5 SING N N 25
2Q0 CAB H6 SING N N 26
2Q0 CAB H7 SING N N 27
2Q0 CAK H8 SING N N 28
2Q0 CAK H9 SING N N 29
2Q0 CAF H10 SING N N 30
2Q0 CAI H12 SING N N 31
2Q0 CAG H13 SING N N 32
2Q0 OAD H14 SING N N 33
2Q0 CAH H15 SING N N 34
2Q0 CAJ H16 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2Q0 InChI InChI 1.03 InChI=1S/C14H15NO2S2/c1-9(2)8-15-13(17)12(19-14(15)18)7-10-3-5-11(16)6-4-10/h3-7,9,16H,8H2,1-2H3/b12-7-
2Q0 InChIKey InChI 1.03 GPURHDUTZUYAFI-GHXNOFRVSA-N
2Q0 SMILES_CANONICAL CACTVS 3.385 CC(C)CN1C(=S)SC(=C/c2ccc(O)cc2)\C1=O
2Q0 SMILES CACTVS 3.385 CC(C)CN1C(=S)SC(=Cc2ccc(O)cc2)C1=O
2Q0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)CN1C(=O)/C(=C/c2ccc(cc2)O)/SC1=S
2Q0 SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CN1C(=O)C(=Cc2ccc(cc2)O)SC1=S
#
_pdbx_chem_comp_identifier.comp_id 2Q0
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(5~{Z})-5-[(4-hydroxyphenyl)methylidene]-3-(2-methylpropyl)-2-sulfanylidene-1,3-thiazolidin-4-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2Q0 'Create component' 2013-12-29 RCSB
2Q0 'Initial release' 2014-01-15 RCSB
2Q0 'Modify formula' 2020-02-12 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2Q0 CAA C 9.934 5.958 1
2Q0 CAR C 9.324 4.588 2
2Q0 CAB C 10.206 3.374 3
2Q0 CAK C 7.832 4.431 4
2Q0 NAS N 7.222 3.061 5
2Q0 CAO C 5.755 2.749 6
2Q0 OAC O 4.640 3.752 7
2Q0 CAP C 7.972 1.762 8
2Q0 SAE S 9.464 1.605 9
2Q0 SAL S 6.968 0.647 10
2Q0 CAQ C 5.598 1.257 11
2Q0 CAF C 4.299 0.507 12
2Q0 CAN C 4.299 -0.993 13
2Q0 CAI C 5.598 -1.743 14
2Q0 CAG C 5.598 -3.243 15
2Q0 CAM C 4.299 -3.993 16
2Q0 OAD O 4.299 -5.493 17
2Q0 CAH C 3.000 -3.243 18
2Q0 CAJ C 3.000 -1.743 19
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2Q0 CAG CAI DOUBLE NONE 1
2Q0 CAG CAM SINGLE NONE 2
2Q0 CAI CAN SINGLE NONE 3
2Q0 OAD CAM SINGLE NONE 4
2Q0 CAM CAH DOUBLE NONE 5
2Q0 CAA CAR SINGLE NONE 6
2Q0 CAN CAF SINGLE ENDUPRIGHT 7
2Q0 CAN CAJ DOUBLE NONE 8
2Q0 CAB CAR SINGLE NONE 9
2Q0 CAF CAQ DOUBLE NONE 10
2Q0 OAC CAO DOUBLE NONE 11
2Q0 CAH CAJ SINGLE NONE 12
2Q0 CAR CAK SINGLE NONE 13
2Q0 CAQ CAO SINGLE ENDUPRIGHT 14
2Q0 CAQ SAL SINGLE ENDDOWNRIGHT 15
2Q0 CAO NAS SINGLE NONE 16
2Q0 NAS CAK SINGLE NONE 17
2Q0 NAS CAP SINGLE NONE 18
2Q0 SAL CAP SINGLE NONE 19
2Q0 CAP SAE DOUBLE NONE 20
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2Q0 MurckoScaffold S1 scaffold O=C1NC(=S)S/C1=C\c1ccccc1 InChI=1S/C10H7NOS2/c12-9-8(14-10(13)11-9)6-7-4-2-1-3-5-7/h1-6H,(H,11,12,13)/b8-6- OONWCXLYKDWKOU-VURMDHGXSA-N
2Q0 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
2Q0 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2Q0 NAS S1 1
2Q0 CAO S1 1
2Q0 OAC S1 1
2Q0 CAP S1 1
2Q0 SAE S1 1
2Q0 SAL S1 1
2Q0 CAQ S1 1
2Q0 CAF S1 1
2Q0 CAN S1 1
2Q0 CAI S1 1
2Q0 CAG S1 1
2Q0 CAM S1 1
2Q0 CAH S1 1
2Q0 CAJ S1 1
2Q0 NAS F1 1
2Q0 CAO F1 1
2Q0 OAC F1 1
2Q0 CAQ F1 1
2Q0 CAN F2 1
2Q0 CAI F2 1
2Q0 CAG F2 1
2Q0 CAM F2 1
2Q0 CAH F2 1
2Q0 CAJ F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2Q0
_pdbe_chem_comp_rdkit_properties.exactmw 293.054
_pdbe_chem_comp_rdkit_properties.amw 293.413
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 19
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.286
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 143.014
_pdbe_chem_comp_rdkit_properties.tpsa 40.540
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.732
_pdbe_chem_comp_rdkit_properties.CrippenMR 81.948
_pdbe_chem_comp_rdkit_properties.chi0v 10.713
_pdbe_chem_comp_rdkit_properties.chi1v 5.916
_pdbe_chem_comp_rdkit_properties.chi2v 3.104
_pdbe_chem_comp_rdkit_properties.chi3v 3.104
_pdbe_chem_comp_rdkit_properties.chi4v 2.230
_pdbe_chem_comp_rdkit_properties.chi0n 24.080
_pdbe_chem_comp_rdkit_properties.chi1n 12.100
_pdbe_chem_comp_rdkit_properties.chi2n 1.833
_pdbe_chem_comp_rdkit_properties.chi3n 1.833
_pdbe_chem_comp_rdkit_properties.chi4n 1.125
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.330
_pdbe_chem_comp_rdkit_properties.kappa1 4.331
_pdbe_chem_comp_rdkit_properties.kappa2 5.755
_pdbe_chem_comp_rdkit_properties.kappa3 3.361
_pdbe_chem_comp_rdkit_properties.Phi 1.312
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2Q0 UniChem PDBe 2Q0
2Q0 UniChem ZINC ZINC000002707200
2Q0 UniChem Nikkaji J3.561.372B
2Q0 UniChem ChemicalBook CB64670537
2Q0 UniChem MedChemExpress HY-116770
2Q0 UniChem 'Probes And Drugs' PD080212
2Q0 UniChem eMolecules 25822057
2Q0 UniChem SureChEMBL SCHEMBL21296295
2Q0 UniChem PubChem 2145809
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2Q0 CAA -5.285 -0.332 0.910 ETKDGv3 1
2Q0 CAR -3.852 0.043 0.515 ETKDGv3 2
2Q0 CAB -3.855 1.331 -0.320 ETKDGv3 3
2Q0 CAK -3.187 -1.124 -0.243 ETKDGv3 4
2Q0 NAS -1.764 -0.856 -0.491 ETKDGv3 5
2Q0 CAO -0.755 -0.981 0.502 ETKDGv3 6
2Q0 OAC -0.998 -1.411 1.663 ETKDGv3 7
2Q0 CAP -1.209 -0.325 -1.698 ETKDGv3 8
2Q0 SAE -2.009 -0.342 -3.126 ETKDGv3 9
2Q0 SAL 0.551 0.034 -1.644 ETKDGv3 10
2Q0 CAQ 0.573 -0.569 0.054 ETKDGv3 11
2Q0 CAF 1.642 -0.534 0.864 ETKDGv3 12
2Q0 CAN 2.988 -0.101 0.437 ETKDGv3 13
2Q0 CAI 3.604 -0.617 -0.814 ETKDGv3 14
2Q0 CAG 4.839 -0.238 -1.166 ETKDGv3 15
2Q0 CAM 5.607 0.685 -0.305 ETKDGv3 16
2Q0 OAD 6.887 1.076 -0.693 ETKDGv3 17
2Q0 CAH 5.067 1.131 0.840 ETKDGv3 18
2Q0 CAJ 3.707 0.708 1.234 ETKDGv3 19
2Q0 H1 -5.753 0.494 1.488 ETKDGv3 20
2Q0 H2 -5.281 -1.239 1.551 ETKDGv3 21
2Q0 H3 -5.901 -0.532 0.007 ETKDGv3 22
2Q0 H4 -3.281 0.236 1.450 ETKDGv3 23
2Q0 H5 -2.816 1.670 -0.514 ETKDGv3 24
2Q0 H6 -4.376 2.144 0.229 ETKDGv3 25
2Q0 H7 -4.371 1.167 -1.291 ETKDGv3 26
2Q0 H8 -3.723 -1.315 -1.197 ETKDGv3 27
2Q0 H9 -3.274 -2.054 0.360 ETKDGv3 28
2Q0 H10 1.513 -0.788 1.910 ETKDGv3 29
2Q0 H12 3.069 -1.323 -1.436 ETKDGv3 30
2Q0 H13 5.283 -0.621 -2.076 ETKDGv3 31
2Q0 H14 7.446 1.706 -0.129 ETKDGv3 32
2Q0 H15 5.621 1.803 1.483 ETKDGv3 33
2Q0 H16 3.294 1.075 2.166 ETKDGv3 34
#