data_2RZ
#
_chem_comp.id 2RZ
_chem_comp.name N-(3,4-dimethoxybenzyl)-Nalpha-{N-[(3,4-dimethoxyphenyl)acetyl]carbamimidoyl}-D-phenylalaninamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H34 N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-01-16
_chem_comp.pdbx_modified_date 2014-08-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 534.603
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2RZ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4OD9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2RZ C1 C1 C 0 1 Y N N N N N -9.487 11.884 -38.255 -0.239 6.314 0.102 C1 2RZ 1
2RZ C2 C2 C 0 1 Y N N N N N -8.903 12.918 -38.992 -1.443 5.789 -0.327 C2 2RZ 2
2RZ C3 C3 C 0 1 Y N N N N N -8.006 13.801 -38.388 -1.762 4.473 -0.049 C3 2RZ 3
2RZ C7 C7 C 0 1 N N R N N N -5.318 14.275 -36.736 -0.723 1.350 -0.172 C7 2RZ 4
2RZ C9 C9 C 0 1 N N N N N N -4.818 12.945 -36.186 -1.177 -0.067 0.071 C9 2RZ 5
2RZ C12 C12 C 0 1 Y N N N N N -8.310 12.616 -36.289 0.328 4.207 1.087 C12 2RZ 6
2RZ C13 C13 C 0 1 N N N N N N -3.692 10.737 -36.655 -2.934 -1.725 0.386 C13 2RZ 7
2RZ C14 C14 C 0 1 Y N N N N N -4.636 9.846 -35.893 -4.439 -1.769 0.433 C14 2RZ 8
2RZ C15 C15 C 0 1 Y N N N N N -4.165 9.145 -34.781 -5.160 -1.981 -0.729 C15 2RZ 9
2RZ C16 C16 C 0 1 Y N N N N N -5.019 8.286 -34.063 -6.544 -2.022 -0.688 C16 2RZ 10
2RZ C21 C21 C 0 1 Y N N N N N 0.506 16.851 -31.451 6.440 -1.249 1.557 C21 2RZ 11
2RZ C22 C22 C 0 1 Y N N N N N 1.537 16.682 -32.387 6.489 -2.396 0.782 C22 2RZ 12
2RZ C24 C24 C 0 1 Y N N N N N 0.109 17.584 -34.110 5.537 -1.183 -1.062 C24 2RZ 13
2RZ O28 O28 O 0 1 N N N N N N 2.414 16.895 -34.565 6.082 -3.486 -1.299 O28 2RZ 14
2RZ C30 C30 C 0 1 N N N N N N 3.080 15.840 -30.690 7.428 -3.511 2.661 C30 2RZ 15
2RZ C31 C31 C 0 1 N N N N N N -2.274 18.222 -33.632 4.942 1.239 -0.857 C31 2RZ 16
2RZ C32 C32 C 0 1 N N N N N N -2.992 17.116 -34.367 3.457 1.309 -0.613 C32 2RZ 17
2RZ C34 C34 C 0 1 Y N N N N N -6.820 8.887 -35.564 -6.479 -1.636 1.684 C34 2RZ 18
2RZ C35 C35 C 0 1 Y N N N N N -6.363 8.169 -34.448 -7.206 -1.849 0.524 C35 2RZ 19
2RZ C4 C4 C 0 1 Y N N N N N -7.744 13.664 -37.026 -0.877 3.682 0.658 C4 2RZ 20
2RZ C5 C5 C 0 1 Y N N N N N -9.194 11.730 -36.904 0.647 5.523 0.810 C5 2RZ 21
2RZ C6 C6 C 0 1 N N N N N N -6.778 14.591 -36.330 -1.224 2.247 0.962 C6 2RZ 22
2RZ N8 N8 N 0 1 N N N N N N -4.493 15.238 -36.017 0.741 1.393 -0.217 N8 2RZ 23
2RZ O10 O10 O 0 1 N N N N N N -4.815 12.771 -34.971 -0.358 -0.953 0.193 O10 2RZ 24
2RZ N11 N11 N 0 1 N N N N N N -4.294 12.034 -37.046 -2.492 -0.348 0.151 N11 2RZ 25
2RZ C17 C17 C 0 1 Y N N N N N -5.950 9.682 -36.313 -5.097 -1.602 1.637 C17 2RZ 26
2RZ C18 C18 C 0 1 N N N N N N -4.250 16.548 -36.398 1.378 2.396 -0.906 C18 2RZ 27
2RZ N19 N19 N 0 1 N N N N N N -4.614 17.014 -37.558 0.687 3.367 -1.430 N19 2RZ 28
2RZ N20 N20 N 0 1 N N N N N N -3.550 17.396 -35.563 2.753 2.375 -1.044 N20 2RZ 29
2RZ C23 C23 C 0 1 Y N N N N N 1.345 17.056 -33.719 6.036 -2.363 -0.534 C23 2RZ 30
2RZ C25 C25 C 0 1 Y N N N N N -0.924 17.706 -33.189 5.485 -0.043 -0.281 C25 2RZ 31
2RZ C26 C26 C 0 1 Y N N N N N -0.730 17.350 -31.851 5.936 -0.076 1.026 C26 2RZ 32
2RZ O27 O27 O 0 1 N N N N N N 2.788 16.234 -32.048 6.980 -3.551 1.305 O27 2RZ 33
2RZ C29 C29 C 0 1 N N N N N N 2.356 17.129 -35.975 5.600 -3.378 -2.640 C29 2RZ 34
2RZ O33 O33 O 0 1 N N N N N N -3.053 16.015 -33.877 2.895 0.407 -0.030 O33 2RZ 35
2RZ O36 O36 O 0 1 N N N N N N -7.194 7.336 -33.736 -8.565 -1.882 0.568 O36 2RZ 36
2RZ O37 O37 O 0 1 N N N N N N -4.591 7.597 -32.964 -7.253 -2.230 -1.829 O37 2RZ 37
2RZ C38 C38 C 0 1 N N N N N N -3.193 7.309 -32.785 -6.507 -2.399 -3.035 C38 2RZ 38
2RZ C39 C39 C 0 1 N N N N N N -8.569 7.172 -34.130 -9.177 -1.690 1.845 C39 2RZ 39
2RZ H1 H1 H 0 1 N N N N N N -10.170 11.200 -38.737 0.012 7.341 -0.119 H1 2RZ 40
2RZ H2 H2 H 0 1 N N N N N N -9.148 13.035 -40.037 -2.135 6.407 -0.880 H2 2RZ 41
2RZ H3 H3 H 0 1 N N N N N N -7.524 14.576 -38.966 -2.704 4.063 -0.384 H3 2RZ 42
2RZ H4 H4 H 0 1 N N N N N N -5.186 14.337 -37.826 -1.126 1.704 -1.121 H4 2RZ 43
2RZ H5 H5 H 0 1 N N N N N N -8.062 12.494 -35.245 1.020 3.589 1.640 H5 2RZ 44
2RZ H6 H6 H 0 1 N N N N N N -3.375 10.210 -37.567 -2.530 -2.079 1.335 H6 2RZ 45
2RZ H7 H7 H 0 1 N N N N N N -2.814 10.936 -36.023 -2.576 -2.364 -0.421 H7 2RZ 46
2RZ H8 H8 H 0 1 N N N N N N -3.138 9.263 -34.469 -4.643 -2.115 -1.668 H8 2RZ 47
2RZ H9 H9 H 0 1 N N N N N N 0.672 16.593 -30.416 6.791 -1.272 2.578 H9 2RZ 48
2RZ H10 H10 H 0 1 N N N N N N -0.042 17.898 -35.132 5.185 -1.155 -2.082 H10 2RZ 49
2RZ H11 H11 H 0 1 N N N N N N 4.128 15.513 -30.620 8.232 -2.782 2.757 H11 2RZ 50
2RZ H12 H12 H 0 1 N N N N N N 2.917 16.695 -30.017 6.599 -3.225 3.309 H12 2RZ 51
2RZ H13 H13 H 0 1 N N N N N N 2.417 15.012 -30.398 7.793 -4.496 2.952 H13 2RZ 52
2RZ H14 H14 H 0 1 N N N N N N -2.140 19.086 -34.300 5.136 1.267 -1.929 H14 2RZ 53
2RZ H15 H15 H 0 1 N N N N N N -2.862 18.526 -32.753 5.429 2.088 -0.377 H15 2RZ 54
2RZ H16 H16 H 0 1 N N N N N N -7.860 8.824 -35.848 -6.991 -1.501 2.625 H16 2RZ 55
2RZ H17 H17 H 0 1 N N N N N N -9.647 10.931 -36.336 1.589 5.932 1.142 H17 2RZ 56
2RZ H18 H18 H 0 1 N N N N N N -7.012 15.629 -36.608 -2.306 2.147 1.053 H18 2RZ 57
2RZ H19 H19 H 0 1 N N N N N N -6.883 14.470 -35.242 -0.752 1.949 1.898 H19 2RZ 58
2RZ H20 H20 H 0 1 N N N N N N -4.063 14.924 -35.171 1.260 0.712 0.240 H20 2RZ 59
2RZ H21 H21 H 0 1 N N N N N N -4.316 12.256 -38.021 -3.147 0.361 0.052 H21 2RZ 60
2RZ H22 H22 H 0 1 N N N N N N -6.297 10.167 -37.214 -4.531 -1.441 2.542 H22 2RZ 61
2RZ H23 H23 H 0 1 N N N N N N -4.324 17.962 -37.689 1.141 4.112 -1.854 H23 2RZ 62
2RZ H24 H24 H 0 1 N N N N N N -3.443 18.337 -35.885 3.211 3.126 -1.451 H24 2RZ 63
2RZ H25 H25 H 0 1 N N N N N N -1.531 17.461 -31.135 5.894 0.816 1.632 H25 2RZ 64
2RZ H26 H26 H 0 1 N N N N N N 3.341 16.929 -36.421 5.694 -4.343 -3.139 H26 2RZ 65
2RZ H27 H27 H 0 1 N N N N N N 1.607 16.462 -36.427 4.553 -3.076 -2.626 H27 2RZ 66
2RZ H28 H28 H 0 1 N N N N N N 2.075 18.176 -36.162 6.186 -2.632 -3.178 H28 2RZ 67
2RZ H29 H29 H 0 1 N N N N N N -3.050 6.751 -31.848 -5.909 -1.507 -3.221 H29 2RZ 68
2RZ H30 H30 H 0 1 N N N N N N -2.832 6.705 -33.630 -5.849 -3.263 -2.938 H30 2RZ 69
2RZ H31 H31 H 0 1 N N N N N N -2.627 8.251 -32.740 -7.192 -2.557 -3.868 H31 2RZ 70
2RZ H32 H32 H 0 1 N N N N N N -9.067 6.472 -33.443 -8.843 -2.470 2.530 H32 2RZ 71
2RZ H33 H33 H 0 1 N N N N N N -9.079 8.146 -34.094 -8.895 -0.714 2.241 H33 2RZ 72
2RZ H34 H34 H 0 1 N N N N N N -8.612 6.773 -35.154 -10.261 -1.739 1.740 H34 2RZ 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2RZ C2 C3 DOUB Y N 1
2RZ C2 C1 SING Y N 2
2RZ C3 C4 SING Y N 3
2RZ C1 C5 DOUB Y N 4
2RZ N19 C18 DOUB N N 5
2RZ N11 C13 SING N N 6
2RZ N11 C9 SING N N 7
2RZ C4 C6 SING N N 8
2RZ C4 C12 DOUB Y N 9
2RZ C5 C12 SING Y N 10
2RZ C7 C6 SING N N 11
2RZ C7 C9 SING N N 12
2RZ C7 N8 SING N N 13
2RZ C13 C14 SING N N 14
2RZ C18 N8 SING N N 15
2RZ C18 N20 SING N N 16
2RZ C17 C14 DOUB Y N 17
2RZ C17 C34 SING Y N 18
2RZ C9 O10 DOUB N N 19
2RZ C29 O28 SING N N 20
2RZ C14 C15 SING Y N 21
2RZ C34 C35 DOUB Y N 22
2RZ N20 C32 SING N N 23
2RZ C15 C16 DOUB Y N 24
2RZ O28 C23 SING N N 25
2RZ C35 C16 SING Y N 26
2RZ C35 O36 SING N N 27
2RZ C32 O33 DOUB N N 28
2RZ C32 C31 SING N N 29
2RZ C39 O36 SING N N 30
2RZ C24 C23 DOUB Y N 31
2RZ C24 C25 SING Y N 32
2RZ C16 O37 SING N N 33
2RZ C23 C22 SING Y N 34
2RZ C31 C25 SING N N 35
2RZ C25 C26 DOUB Y N 36
2RZ O37 C38 SING N N 37
2RZ C22 O27 SING N N 38
2RZ C22 C21 DOUB Y N 39
2RZ O27 C30 SING N N 40
2RZ C26 C21 SING Y N 41
2RZ C1 H1 SING N N 42
2RZ C2 H2 SING N N 43
2RZ C3 H3 SING N N 44
2RZ C7 H4 SING N N 45
2RZ C12 H5 SING N N 46
2RZ C13 H6 SING N N 47
2RZ C13 H7 SING N N 48
2RZ C15 H8 SING N N 49
2RZ C21 H9 SING N N 50
2RZ C24 H10 SING N N 51
2RZ C30 H11 SING N N 52
2RZ C30 H12 SING N N 53
2RZ C30 H13 SING N N 54
2RZ C31 H14 SING N N 55
2RZ C31 H15 SING N N 56
2RZ C34 H16 SING N N 57
2RZ C5 H17 SING N N 58
2RZ C6 H18 SING N N 59
2RZ C6 H19 SING N N 60
2RZ N8 H20 SING N N 61
2RZ N11 H21 SING N N 62
2RZ C17 H22 SING N N 63
2RZ N19 H23 SING N N 64
2RZ N20 H24 SING N N 65
2RZ C26 H25 SING N N 66
2RZ C29 H26 SING N N 67
2RZ C29 H27 SING N N 68
2RZ C29 H28 SING N N 69
2RZ C38 H29 SING N N 70
2RZ C38 H30 SING N N 71
2RZ C38 H31 SING N N 72
2RZ C39 H32 SING N N 73
2RZ C39 H33 SING N N 74
2RZ C39 H34 SING N N 75
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2RZ SMILES ACDLabs 12.01 O=C(NC(=[N@H])NC(C(=O)NCc1cc(OC)c(OC)cc1)Cc2ccccc2)Cc3ccc(OC)c(OC)c3
2RZ InChI InChI 1.03 InChI=1S/C29H34N4O6/c1-36-23-12-10-20(15-25(23)38-3)17-27(34)33-29(30)32-22(14-19-8-6-5-7-9-19)28(35)31-18-21-11-13-24(37-2)26(16-21)39-4/h5-13,15-16,22H,14,17-18H2,1-4H3,(H,31,35)(H3,30,32,33,34)/t22-/m1/s1
2RZ InChIKey InChI 1.03 IZIUZEPBXLRZLW-JOCHJYFZSA-N
2RZ SMILES_CANONICAL CACTVS 3.385 COc1ccc(CNC(=O)[C@@H](Cc2ccccc2)NC(=N)NC(=O)Cc3ccc(OC)c(OC)c3)cc1OC
2RZ SMILES CACTVS 3.385 COc1ccc(CNC(=O)[CH](Cc2ccccc2)NC(=N)NC(=O)Cc3ccc(OC)c(OC)c3)cc1OC
2RZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(\N[C@H](Cc1ccccc1)C(=O)NCc2ccc(c(c2)OC)OC)/NC(=O)Cc3ccc(c(c3)OC)OC"
2RZ SMILES "OpenEye OEToolkits" 1.7.6 COc1ccc(cc1OC)CC(=O)NC(=N)NC(Cc2ccccc2)C(=O)NCc3ccc(c(c3)OC)OC
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2RZ "SYSTEMATIC NAME" ACDLabs 12.01 N-(3,4-dimethoxybenzyl)-Nalpha-{N-[(3,4-dimethoxyphenyl)acetyl]carbamimidoyl}-D-phenylalaninamide
2RZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 (2R)-2-[[N-[2-(3,4-dimethoxyphenyl)ethanoyl]carbamimidoyl]amino]-N-[(3,4-dimethoxyphenyl)methyl]-3-phenyl-propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2RZ 'Create component' 2014-01-16 RCSB
2RZ 'Initial release' 2014-08-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2RZ C1 C 10.794 -8.250 1
2RZ C2 C 9.495 -7.500 2
2RZ C3 C 9.495 -6.000 3
2RZ C7 C 12.093 -3.000 4
2RZ C9 C 13.392 -3.750 5
2RZ C12 C 12.093 -6.000 6
2RZ C13 C 15.990 -3.750 7
2RZ C14 C 17.290 -3.000 8
2RZ C15 C 18.588 -3.750 9
2RZ C16 C 19.887 -3.000 10
2RZ C21 C 5.598 3.750 11
2RZ C22 C 5.598 5.250 12
2RZ C24 C 8.196 5.250 13
2RZ O28 O 6.897 7.500 14
2RZ C30 C 3.000 5.250 15
2RZ C31 C 9.495 3.000 16
2RZ C32 C 9.495 1.500 17
2RZ C34 C 18.588 -0.750 18
2RZ C35 C 19.887 -1.500 19
2RZ C4 C 10.794 -5.250 20
2RZ C5 C 12.093 -7.500 21
2RZ C6 C 10.794 -3.750 22
2RZ N8 N 12.093 -1.500 23
2RZ O10 O 13.392 -5.250 24
2RZ N11 N 14.691 -3.000 25
2RZ C17 C 17.290 -1.500 26
2RZ C18 C 10.794 -0.750 27
2RZ N19 N 9.495 -1.500 28
2RZ N20 N 10.794 0.750 29
2RZ C23 C 6.897 6.000 30
2RZ C25 C 8.196 3.750 31
2RZ C26 C 6.897 3.000 32
2RZ O27 O 4.299 6.000 33
2RZ C29 C 8.196 8.250 34
2RZ O33 O 8.196 0.750 35
2RZ O36 O 21.187 -0.750 36
2RZ O37 O 21.187 -3.750 37
2RZ C38 C 21.187 -5.250 38
2RZ C39 C 21.187 0.750 39
2RZ H23 H 9.495 -3.000 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2RZ C2 C3 SINGLE NONE 1
2RZ C2 C1 DOUBLE NONE 2
2RZ C3 C4 DOUBLE NONE 3
2RZ C1 C5 SINGLE NONE 4
2RZ N19 C18 DOUBLE NONE 5
2RZ N11 C13 SINGLE NONE 6
2RZ N11 C9 SINGLE NONE 7
2RZ C4 C6 SINGLE NONE 8
2RZ C4 C12 SINGLE NONE 9
2RZ C5 C12 DOUBLE NONE 10
2RZ C7 C6 SINGLE BEGINWEDGE 11
2RZ C7 C9 SINGLE NONE 12
2RZ C7 N8 SINGLE NONE 13
2RZ C13 C14 SINGLE NONE 14
2RZ C18 N8 SINGLE ENDUPRIGHT 15
2RZ C18 N20 SINGLE ENDDOWNRIGHT 16
2RZ C17 C14 SINGLE NONE 17
2RZ C17 C34 DOUBLE NONE 18
2RZ C9 O10 DOUBLE NONE 19
2RZ C29 O28 SINGLE NONE 20
2RZ C14 C15 DOUBLE NONE 21
2RZ C34 C35 SINGLE NONE 22
2RZ N20 C32 SINGLE NONE 23
2RZ C15 C16 SINGLE NONE 24
2RZ O28 C23 SINGLE NONE 25
2RZ C35 C16 DOUBLE NONE 26
2RZ C35 O36 SINGLE NONE 27
2RZ C32 O33 DOUBLE NONE 28
2RZ C32 C31 SINGLE NONE 29
2RZ C39 O36 SINGLE NONE 30
2RZ C24 C23 DOUBLE NONE 31
2RZ C24 C25 SINGLE NONE 32
2RZ C16 O37 SINGLE NONE 33
2RZ C23 C22 SINGLE NONE 34
2RZ C31 C25 SINGLE NONE 35
2RZ C25 C26 DOUBLE NONE 36
2RZ O37 C38 SINGLE NONE 37
2RZ C22 O27 SINGLE NONE 38
2RZ C22 C21 DOUBLE NONE 39
2RZ O27 C30 SINGLE NONE 40
2RZ C26 C21 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2RZ MurckoScaffold S1 scaffold 'N=C(NC(=O)Cc1ccccc1)N[C@H](Cc1ccccc1)C(=O)NCc1ccccc1' InChI=1S/C25H26N4O2/c26-25(29-23(30)17-20-12-6-2-7-13-20)28-22(16-19-10-4-1-5-11-19)24(31)27-18-21-14-8-3-9-15-21/h1-15,22H,16-18H2,(H,27,31)(H3,26,28,29,30)/t22-/m1/s1 XDSYMVGSAHVSTF-JOCHJYFZSA-N
2RZ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
2RZ peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
2RZ phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2RZ C1 S1 1
2RZ C2 S1 1
2RZ C3 S1 1
2RZ C7 S1 1
2RZ C9 S1 1
2RZ C12 S1 1
2RZ C13 S1 1
2RZ C14 S1 1
2RZ C15 S1 1
2RZ C16 S1 1
2RZ C21 S1 1
2RZ C22 S1 1
2RZ C24 S1 1
2RZ C31 S1 1
2RZ C32 S1 1
2RZ C34 S1 1
2RZ C35 S1 1
2RZ C4 S1 1
2RZ C5 S1 1
2RZ C6 S1 1
2RZ N8 S1 1
2RZ O10 S1 1
2RZ N11 S1 1
2RZ C17 S1 1
2RZ C18 S1 1
2RZ N19 S1 1
2RZ N20 S1 1
2RZ C23 S1 1
2RZ C25 S1 1
2RZ C26 S1 1
2RZ O33 S1 1
2RZ N11 F1 1
2RZ C9 F1 1
2RZ O10 F1 1
2RZ C7 F1 1
2RZ N20 F1 2
2RZ C32 F1 2
2RZ O33 F1 2
2RZ C31 F1 2
2RZ O10 F2 1
2RZ C9 F2 1
2RZ C7 F2 1
2RZ N8 F2 1
2RZ C1 F3 1
2RZ C2 F3 1
2RZ C3 F3 1
2RZ C4 F3 1
2RZ C12 F3 1
2RZ C5 F3 1
2RZ C14 F3 2
2RZ C17 F3 2
2RZ C34 F3 2
2RZ C35 F3 2
2RZ C16 F3 2
2RZ C15 F3 2
2RZ C21 F3 3
2RZ C22 F3 3
2RZ C23 F3 3
2RZ C24 F3 3
2RZ C25 F3 3
2RZ C26 F3 3
#
_pdbe_chem_comp_rdkit_properties.comp_id 2RZ
_pdbe_chem_comp_rdkit_properties.exactmw 534.248
_pdbe_chem_comp_rdkit_properties.amw 534.613
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 16
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 73
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.276
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 275.673
_pdbe_chem_comp_rdkit_properties.tpsa 131.000
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.818
_pdbe_chem_comp_rdkit_properties.CrippenMR 144.344
_pdbe_chem_comp_rdkit_properties.chi0v 18.738
_pdbe_chem_comp_rdkit_properties.chi1v 9.606
_pdbe_chem_comp_rdkit_properties.chi2v 3.760
_pdbe_chem_comp_rdkit_properties.chi3v 3.760
_pdbe_chem_comp_rdkit_properties.chi4v 2.231
_pdbe_chem_comp_rdkit_properties.chi0n 52.738
_pdbe_chem_comp_rdkit_properties.chi1n 26.395
_pdbe_chem_comp_rdkit_properties.chi2n 3.760
_pdbe_chem_comp_rdkit_properties.chi3n 3.760
_pdbe_chem_comp_rdkit_properties.chi4n 2.231
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.730
_pdbe_chem_comp_rdkit_properties.kappa1 7.682
_pdbe_chem_comp_rdkit_properties.kappa2 14.272
_pdbe_chem_comp_rdkit_properties.kappa3 8.390
_pdbe_chem_comp_rdkit_properties.Phi 2.811
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2RZ UniChem ChEMBL CHEMBL3321925
2RZ UniChem PDBe 2RZ
2RZ UniChem ZINC ZINC000098208253
2RZ UniChem SureChEMBL SCHEMBL15881147
2RZ UniChem SureChEMBL SCHEMBL15881149
2RZ UniChem PubChem 76871908
2RZ UniChem BindingDb 50055908
2RZ UniChem BRENDA 202126
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2RZ C1 1.025 -1.230 7.542 ETKDGv3 1
2RZ C2 1.438 -2.368 6.970 ETKDGv3 2
2RZ C3 2.281 -2.323 5.757 ETKDGv3 3
2RZ C7 2.609 -1.322 2.714 ETKDGv3 4
2RZ C9 3.473 -1.404 1.485 ETKDGv3 5
2RZ C12 2.178 0.116 5.864 ETKDGv3 6
2RZ C13 3.672 -2.409 -0.827 ETKDGv3 7
2RZ C14 2.484 -1.852 -1.563 ETKDGv3 8
2RZ C15 2.273 -0.527 -1.620 ETKDGv3 9
2RZ C16 1.064 0.020 -2.294 ETKDGv3 10
2RZ C21 -1.932 3.073 -2.432 ETKDGv3 11
2RZ C22 -2.849 2.407 -3.160 ETKDGv3 12
2RZ C24 -3.737 1.339 -1.145 ETKDGv3 13
2RZ O28 -4.744 0.819 -3.274 ETKDGv3 14
2RZ C30 -2.054 3.313 -5.358 ETKDGv3 15
2RZ C31 -2.652 1.861 1.138 ETKDGv3 16
2RZ C32 -1.829 0.646 1.436 ETKDGv3 17
2RZ C34 0.398 -2.289 -2.759 ETKDGv3 18
2RZ C35 0.175 -0.821 -2.851 ETKDGv3 19
2RZ C4 2.644 -1.141 5.225 ETKDGv3 20
2RZ C5 1.412 0.071 6.961 ETKDGv3 21
2RZ C6 3.474 -1.088 3.968 ETKDGv3 22
2RZ N8 1.630 -0.244 2.538 ETKDGv3 23
2RZ O10 4.258 -0.455 1.210 ETKDGv3 24
2RZ N11 3.356 -2.522 0.594 ETKDGv3 25
2RZ C17 1.485 -2.772 -2.148 ETKDGv3 26
2RZ C18 0.471 -0.377 1.702 ETKDGv3 27
2RZ N19 0.254 -1.487 1.065 ETKDGv3 28
2RZ N20 -0.400 0.751 1.529 ETKDGv3 29
2RZ C23 -3.802 1.496 -2.482 ETKDGv3 30
2RZ C25 -2.730 2.077 -0.347 ETKDGv3 31
2RZ C26 -1.865 2.893 -0.969 ETKDGv3 32
2RZ O27 -2.936 2.534 -4.557 ETKDGv3 33
2RZ C29 -5.685 -0.132 -2.784 ETKDGv3 34
2RZ O33 -2.405 -0.463 1.604 ETKDGv3 35
2RZ O36 -0.942 -0.286 -3.509 ETKDGv3 36
2RZ O37 0.825 1.400 -2.368 ETKDGv3 37
2RZ C38 1.653 2.385 -1.762 ETKDGv3 38
2RZ C39 -1.935 -1.072 -4.157 ETKDGv3 39
2RZ H1 0.406 -1.261 8.429 ETKDGv3 40
2RZ H2 1.154 -3.322 7.393 ETKDGv3 41
2RZ H3 2.596 -3.254 5.300 ETKDGv3 42
2RZ H4 2.070 -2.286 2.850 ETKDGv3 43
2RZ H5 2.456 1.075 5.445 ETKDGv3 44
2RZ H6 3.926 -3.415 -1.224 ETKDGv3 45
2RZ H7 4.567 -1.767 -0.979 ETKDGv3 46
2RZ H8 2.988 0.146 -1.166 ETKDGv3 47
2RZ H9 -1.222 3.743 -2.896 ETKDGv3 48
2RZ H10 -4.416 0.674 -0.628 ETKDGv3 49
2RZ H11 -1.010 2.952 -5.238 ETKDGv3 50
2RZ H12 -2.124 4.384 -5.073 ETKDGv3 51
2RZ H13 -2.345 3.209 -6.423 ETKDGv3 52
2RZ H14 -3.676 1.732 1.551 ETKDGv3 53
2RZ H15 -2.211 2.748 1.645 ETKDGv3 54
2RZ H16 -0.318 -2.984 -3.177 ETKDGv3 55
2RZ H17 1.073 0.989 7.424 ETKDGv3 56
2RZ H18 4.267 -1.867 4.022 ETKDGv3 57
2RZ H19 3.990 -0.105 3.898 ETKDGv3 58
2RZ H20 1.804 0.684 2.988 ETKDGv3 59
2RZ H21 2.812 -3.359 0.903 ETKDGv3 60
2RZ H22 1.629 -3.844 -2.081 ETKDGv3 61
2RZ H23 -0.544 -1.612 0.405 ETKDGv3 62
2RZ H24 0.020 1.705 1.602 ETKDGv3 63
2RZ H25 -1.105 3.425 -0.409 ETKDGv3 64
2RZ H26 -6.286 -0.517 -3.633 ETKDGv3 65
2RZ H27 -5.154 -0.984 -2.310 ETKDGv3 66
2RZ H28 -6.369 0.348 -2.054 ETKDGv3 67
2RZ H29 2.676 2.341 -2.191 ETKDGv3 68
2RZ H30 1.229 3.390 -1.962 ETKDGv3 69
2RZ H31 1.690 2.228 -0.663 ETKDGv3 70
2RZ H32 -2.671 -0.400 -4.643 ETKDGv3 71
2RZ H33 -2.464 -1.705 -3.414 ETKDGv3 72
2RZ H34 -1.470 -1.707 -4.940 ETKDGv3 73
#