data_2T3
#
_chem_comp.id 2T3
_chem_comp.name "(2R,3R)-4-ANILINO-2,3-DIHYDROXY-4-OXOBUTANOIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H11 N O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-03-14
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 225.198
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2T3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2T3 O4 O4 O 0 1 N N N N N N 40.756 17.134 97.351 -0.442 -0.050 2.792 O4 2T3 1
2T3 C4 C4 C 0 1 N N N N N N 40.715 17.526 96.132 -1.241 0.156 1.715 C4 2T3 2
2T3 O41 O41 O 0 1 N N N N N N 40.050 16.945 95.227 -2.277 0.804 1.755 O41 2T3 3
2T3 C3 C3 C 0 1 N N N N N N 41.458 18.755 95.687 -0.655 -0.490 0.477 C3 2T3 4
2T3 O3 O3 O 0 1 N N N N N N 42.172 19.414 96.747 -1.468 -0.137 -0.635 O3 2T3 5
2T3 C2 C2 C 0 1 N N N N N N 40.457 19.745 95.111 -0.606 -2.016 0.605 C2 2T3 6
2T3 O2 O2 O 0 1 N N N N N N 39.402 20.040 96.054 -1.917 -2.513 0.836 O2 2T3 7
2T3 C1 C1 C 0 1 N N N N N N 41.084 21.042 94.665 -0.045 -2.660 -0.663 C1 2T3 8
2T3 O11 O11 O 0 1 N N N N N N 40.882 22.071 95.279 -0.722 -3.427 -1.341 O11 2T3 9
2T3 N1 N1 N 0 1 N N N N N N 41.821 20.959 93.551 1.272 -2.272 -0.888 N1 2T3 10
2T3 C16 C16 C 0 1 N N N N N N 42.435 21.995 92.909 2.115 -2.662 -1.956 C16 2T3 11
2T3 C17 C17 C 0 1 N N N N N N 43.097 21.695 91.704 3.410 -2.173 -2.009 C17 2T3 12
2T3 C18 C18 C 0 1 N N N N N N 43.767 22.697 90.997 4.242 -2.557 -3.061 C18 2T3 13
2T3 C19 C19 C 0 1 N N N N N N 43.759 24.011 91.457 3.767 -3.424 -4.045 C19 2T3 14
2T3 C20 C20 C 0 1 N N N N N N 43.099 24.330 92.647 2.460 -3.907 -3.977 C20 2T3 15
2T3 C21 C21 C 0 1 N N N N N N 42.431 23.324 93.351 1.629 -3.524 -2.925 C21 2T3 16
2T3 HO4 HO4 H 0 1 N N N N N N 40.218 16.358 97.453 -0.795 0.381 3.599 HO4 2T3 17
2T3 H3 H3 H 0 1 N N N N N N 42.201 18.425 94.946 0.339 -0.063 0.307 H3 2T3 18
2T3 HO3 HO3 H 0 1 N N N N N N 43.072 19.559 96.480 -0.919 -0.246 -1.428 HO3 2T3 19
2T3 H2 H2 H 0 1 N N N N N N 40.042 19.246 94.223 0.017 -2.316 1.455 H2 2T3 20
2T3 HO2 HO2 H 0 1 N N N N N N 39.767 20.105 96.929 -2.450 -2.269 0.062 HO2 2T3 21
2T3 HN1 HN1 H 0 1 N N N N N N 41.933 20.050 93.150 1.693 -1.638 -0.212 HN1 2T3 22
2T3 H17 H17 H 0 1 N N N N N N 43.087 20.684 91.323 3.792 -1.497 -1.248 H17 2T3 23
2T3 H18 H18 H 0 1 N N N N N N 44.295 22.450 90.088 5.259 -2.180 -3.114 H18 2T3 24
2T3 H19 H19 H 0 1 N N N N N N 44.263 24.783 90.895 4.414 -3.723 -4.864 H19 2T3 25
2T3 H20 H20 H 0 1 N N N N N N 43.105 25.344 93.019 2.090 -4.582 -4.743 H20 2T3 26
2T3 H21 H21 H 0 1 N N N N N N 41.900 23.577 94.256 0.612 -3.907 -2.882 H21 2T3 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2T3 O4 C4 SING N N 1
2T3 O4 HO4 SING N N 2
2T3 C4 O41 DOUB N N 3
2T3 C4 C3 SING N N 4
2T3 C3 C2 SING N N 5
2T3 C3 O3 SING N N 6
2T3 C3 H3 SING N N 7
2T3 O3 HO3 SING N N 8
2T3 C2 C1 SING N N 9
2T3 C2 O2 SING N N 10
2T3 C2 H2 SING N N 11
2T3 O2 HO2 SING N N 12
2T3 C1 N1 SING N N 13
2T3 C1 O11 DOUB N N 14
2T3 N1 C16 SING N N 15
2T3 N1 HN1 SING N N 16
2T3 C16 C17 DOUB N N 17
2T3 C16 C21 SING N N 18
2T3 C17 C18 SING N N 19
2T3 C17 H17 SING N N 20
2T3 C18 C19 DOUB N N 21
2T3 C18 H18 SING N N 22
2T3 C19 C20 SING N N 23
2T3 C19 H19 SING N N 24
2T3 C20 C21 DOUB N N 25
2T3 C20 H20 SING N N 26
2T3 C21 H21 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2T3 SMILES ACDLabs 10.04 O=C(Nc1ccccc1)C(O)C(O)C(=O)O
2T3 SMILES_CANONICAL CACTVS 3.341 O[C@H]([C@@H](O)C(=O)Nc1ccccc1)C(O)=O
2T3 SMILES CACTVS 3.341 O[CH]([CH](O)C(=O)Nc1ccccc1)C(O)=O
2T3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)NC(=O)[C@@H]([C@H](C(=O)O)O)O
2T3 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc(cc1)NC(=O)C(C(C(=O)O)O)O
2T3 InChI InChI 1.03 InChI=1S/C10H11NO5/c12-7(8(13)10(15)16)9(14)11-6-4-2-1-3-5-6/h1-5,7-8,12-13H,(H,11,14)(H,15,16)/t7-,8-/m1/s1
2T3 InChIKey InChI 1.03 ZWXNRJCDXZFNLJ-HTQZYQBOSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2T3 "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R)-2,3-dihydroxy-4-oxo-4-(phenylamino)butanoic acid"
2T3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R)-2,3-dihydroxy-4-oxo-4-phenylazanyl-butanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2T3 'Create component' 2007-03-14 RCSB
2T3 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2T3 O4 O 8.196 4.410 1
2T3 C4 C 6.897 3.660 2
2T3 O41 O 5.598 4.410 3
2T3 C3 C 6.897 2.160 4
2T3 O3 O 8.196 1.410 5
2T3 C2 C 5.598 1.410 6
2T3 O2 O 4.299 2.160 7
2T3 C1 C 5.598 -0.090 8
2T3 O11 O 6.897 -0.840 9
2T3 N1 N 4.299 -0.840 10
2T3 C16 C 4.299 -2.340 11
2T3 C17 C 3.000 -3.090 12
2T3 C18 C 3.000 -4.590 13
2T3 C19 C 4.299 -5.340 14
2T3 C20 C 5.598 -4.590 15
2T3 C21 C 5.598 -3.090 16
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2T3 O4 C4 SINGLE NONE 1
2T3 C4 O41 DOUBLE NONE 2
2T3 C4 C3 SINGLE NONE 3
2T3 C3 C2 SINGLE NONE 4
2T3 C3 O3 SINGLE BEGINDASH 5
2T3 C2 C1 SINGLE NONE 6
2T3 C2 O2 SINGLE BEGINDASH 7
2T3 C1 N1 SINGLE NONE 8
2T3 C1 O11 DOUBLE NONE 9
2T3 N1 C16 SINGLE NONE 10
2T3 C16 C17 DOUBLE NONE 11
2T3 C16 C21 SINGLE NONE 12
2T3 C17 C18 SINGLE NONE 13
2T3 C18 C19 DOUBLE NONE 14
2T3 C19 C20 SINGLE NONE 15
2T3 C20 C21 DOUBLE NONE 16
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2T3 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
2T3 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
2T3 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2T3 C16 S1 1
2T3 C17 S1 1
2T3 C18 S1 1
2T3 C19 S1 1
2T3 C20 S1 1
2T3 C21 S1 1
2T3 N1 F1 1
2T3 C1 F1 1
2T3 O11 F1 1
2T3 C2 F1 1
2T3 C16 F2 1
2T3 C17 F2 1
2T3 C18 F2 1
2T3 C19 F2 1
2T3 C20 F2 1
2T3 C21 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2T3
_pdbe_chem_comp_rdkit_properties.exactmw 225.064
_pdbe_chem_comp_rdkit_properties.amw 225.200
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 6
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 16
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 106.920
_pdbe_chem_comp_rdkit_properties.tpsa 106.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.949
_pdbe_chem_comp_rdkit_properties.CrippenMR 53.897
_pdbe_chem_comp_rdkit_properties.chi0v 7.488
_pdbe_chem_comp_rdkit_properties.chi1v 3.718
_pdbe_chem_comp_rdkit_properties.chi2v 1.286
_pdbe_chem_comp_rdkit_properties.chi3v 1.286
_pdbe_chem_comp_rdkit_properties.chi4v 0.641
_pdbe_chem_comp_rdkit_properties.chi0n 18.488
_pdbe_chem_comp_rdkit_properties.chi1n 8.890
_pdbe_chem_comp_rdkit_properties.chi2n 1.286
_pdbe_chem_comp_rdkit_properties.chi3n 1.286
_pdbe_chem_comp_rdkit_properties.chi4n 0.641
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.920
_pdbe_chem_comp_rdkit_properties.kappa1 3.830
_pdbe_chem_comp_rdkit_properties.kappa2 5.243
_pdbe_chem_comp_rdkit_properties.kappa3 3.042
_pdbe_chem_comp_rdkit_properties.Phi 1.255
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2T3 UniChem PDBe 2T3
2T3 UniChem ZINC ZINC000002379613
2T3 UniChem eMolecules 28206908
2T3 UniChem SureChEMBL SCHEMBL14715852
2T3 UniChem 'EPA CompTox Dashboard' DTXSID80464949
2T3 UniChem ChemicalBook CB5479070
2T3 UniChem Nikkaji J1.948.311H
2T3 UniChem PubChem 11407500
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2T3 O4 -5.168 0.603 -0.826 ETKDGv3 1
2T3 C4 -4.358 -0.202 -0.031 ETKDGv3 2
2T3 O41 -4.806 -0.664 1.053 ETKDGv3 3
2T3 C3 -2.938 -0.478 -0.453 ETKDGv3 4
2T3 O3 -2.627 -1.846 -0.332 ETKDGv3 5
2T3 C2 -1.933 0.417 0.316 ETKDGv3 6
2T3 O2 -2.055 0.240 1.708 ETKDGv3 7
2T3 C1 -0.499 0.217 -0.131 ETKDGv3 8
2T3 O11 -0.254 -0.285 -1.262 ETKDGv3 9
2T3 N1 0.576 0.705 0.689 ETKDGv3 10
2T3 C16 1.961 0.377 0.487 ETKDGv3 11
2T3 C17 2.343 -0.833 0.033 ETKDGv3 12
2T3 C18 3.778 -1.148 -0.132 ETKDGv3 13
2T3 C19 4.706 -0.240 0.189 ETKDGv3 14
2T3 C20 4.298 1.079 0.712 ETKDGv3 15
2T3 C21 2.999 1.370 0.858 ETKDGv3 16
2T3 HO4 -6.121 0.813 -0.553 ETKDGv3 17
2T3 H3 -2.865 -0.220 -1.532 ETKDGv3 18
2T3 HO3 -2.758 -2.114 0.614 ETKDGv3 19
2T3 H2 -2.188 1.476 0.092 ETKDGv3 20
2T3 HO2 -1.643 -0.632 1.944 ETKDGv3 21
2T3 HN1 0.346 1.411 1.424 ETKDGv3 22
2T3 H17 1.616 -1.602 -0.191 ETKDGv3 23
2T3 H18 4.076 -2.119 -0.508 ETKDGv3 24
2T3 H19 5.757 -0.471 0.071 ETKDGv3 25
2T3 H20 5.051 1.808 0.980 ETKDGv3 26
2T3 H21 2.706 2.338 1.244 ETKDGv3 27
#