data_2Y6
#
_chem_comp.id 2Y6
_chem_comp.name
N-[(R)-(2-chlorophenyl){7-[4-(2-hydroxypropan-2-yl)pyridin-2-yl]-1-benzothiophen-2-yl}methyl]cyclopropanesulfonamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H25 Cl N2 O3 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-04-10
_chem_comp.pdbx_modified_date 2015-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 513.071
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2Y6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4PXS
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2Y6 CL1 CL1 CL 0 0 N N N N N N 43.267 -22.687 -15.589 -3.377 -2.950 0.181 CL1 2Y6 1
2Y6 C23 C23 C 0 1 Y N N N N N 43.896 -21.099 -15.327 -3.323 -1.709 1.393 C23 2Y6 2
2Y6 C22 C22 C 0 1 Y N N N N N 44.864 -20.622 -16.199 -3.698 -1.995 2.694 C22 2Y6 3
2Y6 C21 C21 C 0 1 Y N N N N N 45.423 -19.365 -16.059 -3.654 -1.006 3.658 C21 2Y6 4
2Y6 C20 C20 C 0 1 Y N N N N N 44.980 -18.554 -15.030 -3.235 0.268 3.324 C20 2Y6 5
2Y6 C19 C19 C 0 1 Y N N N N N 44.002 -19.012 -14.168 -2.859 0.554 2.025 C19 2Y6 6
2Y6 C18 C18 C 0 1 Y N N N N N 43.450 -20.284 -14.311 -2.898 -0.435 1.060 C18 2Y6 7
2Y6 C17 C17 C 0 1 N N R N N N 42.382 -20.723 -13.324 -2.482 -0.124 -0.355 C17 2Y6 8
2Y6 N2 N2 N 0 1 N N N N N N 42.752 -20.250 -11.980 -2.539 1.323 -0.574 N2 2Y6 9
2Y6 S2 S2 S 0 1 N N N N N N 42.730 -21.474 -10.926 -3.891 2.007 -1.240 S2 2Y6 10
2Y6 O2 O2 O 0 1 N N N N N N 43.555 -20.999 -9.805 -3.579 3.391 -1.322 O2 2Y6 11
2Y6 O3 O3 O 0 1 N N N N N N 43.250 -22.746 -11.516 -4.132 1.240 -2.411 O3 2Y6 12
2Y6 C24 C24 C 0 1 N N N N N N 41.064 -21.716 -10.280 -5.195 1.721 -0.012 C24 2Y6 13
2Y6 C25 C25 C 0 1 N N N N N N 40.054 -22.018 -11.372 -6.620 2.137 -0.384 C25 2Y6 14
2Y6 C26 C26 C 0 1 N N N N N N 40.550 -23.137 -10.438 -6.244 0.654 -0.331 C26 2Y6 15
2Y6 C8 C8 C 0 1 Y N N N N N 41.069 -20.150 -13.791 -1.075 -0.613 -0.584 C8 2Y6 16
2Y6 C7 C7 C 0 1 Y N N N N N 40.350 -19.241 -13.125 -0.770 -1.740 -1.195 C7 2Y6 17
2Y6 S1 S1 S 0 1 Y N N N N N 40.300 -20.559 -15.289 0.365 0.250 -0.078 S1 2Y6 18
2Y6 C5 C5 C 0 1 Y N N N N N 38.988 -19.540 -15.008 1.422 -0.997 -0.729 C5 2Y6 19
2Y6 C6 C6 C 0 1 Y N N N N N 39.204 -18.871 -13.774 0.655 -2.011 -1.304 C6 2Y6 20
2Y6 C3 C3 C 0 1 Y N N N N N 38.254 -17.941 -13.325 1.311 -3.115 -1.890 C3 2Y6 21
2Y6 C2 C2 C 0 1 Y N N N N N 37.134 -17.708 -14.092 2.681 -3.192 -1.893 C2 2Y6 22
2Y6 C1 C1 C 0 1 Y N N N N N 36.943 -18.389 -15.316 3.446 -2.187 -1.322 C1 2Y6 23
2Y6 C4 C4 C 0 1 Y N N N N N 37.862 -19.322 -15.768 2.828 -1.089 -0.743 C4 2Y6 24
2Y6 C9 C9 C 0 1 Y N N N N N 37.717 -19.975 -17.016 3.647 -0.015 -0.133 C9 2Y6 25
2Y6 C13 C13 C 0 1 Y N N N N N 36.651 -19.688 -17.908 5.037 -0.115 -0.144 C13 2Y6 26
2Y6 N1 N1 N 0 1 Y N N N N N 38.652 -20.856 -17.420 3.051 1.036 0.415 N1 2Y6 27
2Y6 C10 C10 C 0 1 Y N N N N N 38.547 -21.454 -18.589 3.742 2.012 0.967 C10 2Y6 28
2Y6 C11 C11 C 0 1 Y N N N N N 37.509 -21.221 -19.512 5.124 1.975 0.995 C11 2Y6 29
2Y6 C12 C12 C 0 1 Y N N N N N 36.531 -20.320 -19.161 5.788 0.896 0.429 C12 2Y6 30
2Y6 C14 C14 C 0 1 N N N N N N 35.387 -20.055 -20.118 7.293 0.825 0.442 C14 2Y6 31
2Y6 C15 C15 C 0 1 N N N N N N 35.140 -21.343 -20.893 7.872 2.241 0.414 C15 2Y6 32
2Y6 C16 C16 C 0 1 N N N N N N 35.649 -18.910 -21.051 7.759 0.109 1.712 C16 2Y6 33
2Y6 O1 O1 O 0 1 N N N N N N 34.279 -19.675 -19.413 7.746 0.102 -0.704 O1 2Y6 34
2Y6 H1 H1 H 0 1 N N N N N N 45.191 -21.252 -17.013 -4.027 -2.990 2.955 H1 2Y6 35
2Y6 H2 H2 H 0 1 N N N N N N 46.190 -19.024 -16.739 -3.948 -1.229 4.674 H2 2Y6 36
2Y6 H3 H3 H 0 1 N N N N N N 45.397 -17.566 -14.901 -3.201 1.041 4.078 H3 2Y6 37
2Y6 H4 H4 H 0 1 N N N N N N 43.659 -18.372 -13.368 -2.532 1.550 1.765 H4 2Y6 38
2Y6 H5 H5 H 0 1 N N N N N N 42.320 -21.821 -13.327 -3.158 -0.624 -1.049 H5 2Y6 39
2Y6 H6 H6 H 0 1 N N N N N N 43.671 -19.858 -12.010 -1.784 1.880 -0.328 H6 2Y6 40
2Y6 H7 H7 H 0 1 N N N N N N 40.794 -21.106 -9.406 -4.894 1.834 1.029 H7 2Y6 41
2Y6 H8 H8 H 0 1 N N N N N N 40.363 -22.004 -12.428 -7.256 2.523 0.412 H8 2Y6 42
2Y6 H9 H9 H 0 1 N N N N N N 39.022 -21.646 -11.287 -6.774 2.582 -1.367 H9 2Y6 43
2Y6 H10 H10 H 0 1 N N N N N N 39.874 -23.566 -9.684 -6.151 0.124 -1.280 H10 2Y6 44
2Y6 H11 H11 H 0 1 N N N N N N 41.214 -23.924 -10.825 -6.633 0.065 0.500 H11 2Y6 45
2Y6 H12 H12 H 0 1 N N N N N N 40.645 -18.838 -12.168 -1.521 -2.411 -1.585 H12 2Y6 46
2Y6 H13 H13 H 0 1 N N N N N N 38.399 -17.416 -12.392 0.730 -3.907 -2.339 H13 2Y6 47
2Y6 H14 H14 H 0 1 N N N N N N 36.394 -16.997 -13.755 3.168 -4.043 -2.345 H14 2Y6 48
2Y6 H15 H15 H 0 1 N N N N N N 36.065 -18.178 -15.909 4.523 -2.258 -1.330 H15 2Y6 49
2Y6 H16 H16 H 0 1 N N N N N N 35.907 -18.961 -17.616 5.521 -0.969 -0.594 H16 2Y6 50
2Y6 H17 H17 H 0 1 N N N N N N 39.308 -22.171 -18.858 3.223 2.853 1.404 H17 2Y6 51
2Y6 H18 H18 H 0 1 N N N N N N 37.482 -21.732 -20.463 5.682 2.780 1.451 H18 2Y6 52
2Y6 H19 H19 H 0 1 N N N N N N 34.951 -22.166 -20.188 7.540 2.750 -0.491 H19 2Y6 53
2Y6 H20 H20 H 0 1 N N N N N N 34.266 -21.214 -21.549 7.526 2.792 1.288 H20 2Y6 54
2Y6 H21 H21 H 0 1 N N N N N N 36.025 -21.579 -21.503 8.960 2.189 0.423 H21 2Y6 55
2Y6 H22 H22 H 0 1 N N N N N N 35.824 -17.994 -20.468 8.848 0.058 1.722 H22 2Y6 56
2Y6 H23 H23 H 0 1 N N N N N N 36.537 -19.131 -21.662 7.414 0.661 2.587 H23 2Y6 57
2Y6 H24 H24 H 0 1 N N N N N N 34.779 -18.766 -21.708 7.347 -0.899 1.733 H24 2Y6 58
2Y6 H25 H25 H 0 1 N N N N N N 34.048 -20.357 -18.793 7.487 0.499 -1.547 H25 2Y6 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2Y6 C16 C14 SING N N 1
2Y6 C15 C14 SING N N 2
2Y6 C14 O1 SING N N 3
2Y6 C14 C12 SING N N 4
2Y6 C11 C12 DOUB Y N 5
2Y6 C11 C10 SING Y N 6
2Y6 C12 C13 SING Y N 7
2Y6 C10 N1 DOUB Y N 8
2Y6 C13 C9 DOUB Y N 9
2Y6 N1 C9 SING Y N 10
2Y6 C9 C4 SING N N 11
2Y6 C22 C21 DOUB Y N 12
2Y6 C22 C23 SING Y N 13
2Y6 C21 C20 SING Y N 14
2Y6 C4 C1 DOUB Y N 15
2Y6 C4 C5 SING Y N 16
2Y6 CL1 C23 SING N N 17
2Y6 C23 C18 DOUB Y N 18
2Y6 C1 C2 SING Y N 19
2Y6 S1 C5 SING Y N 20
2Y6 S1 C8 SING Y N 21
2Y6 C20 C19 DOUB Y N 22
2Y6 C5 C6 DOUB Y N 23
2Y6 C18 C19 SING Y N 24
2Y6 C18 C17 SING N N 25
2Y6 C2 C3 DOUB Y N 26
2Y6 C8 C17 SING N N 27
2Y6 C8 C7 DOUB Y N 28
2Y6 C6 C3 SING Y N 29
2Y6 C6 C7 SING Y N 30
2Y6 C17 N2 SING N N 31
2Y6 N2 S2 SING N N 32
2Y6 O3 S2 DOUB N N 33
2Y6 C25 C26 SING N N 34
2Y6 C25 C24 SING N N 35
2Y6 S2 C24 SING N N 36
2Y6 S2 O2 DOUB N N 37
2Y6 C26 C24 SING N N 38
2Y6 C22 H1 SING N N 39
2Y6 C21 H2 SING N N 40
2Y6 C20 H3 SING N N 41
2Y6 C19 H4 SING N N 42
2Y6 C17 H5 SING N N 43
2Y6 N2 H6 SING N N 44
2Y6 C24 H7 SING N N 45
2Y6 C25 H8 SING N N 46
2Y6 C25 H9 SING N N 47
2Y6 C26 H10 SING N N 48
2Y6 C26 H11 SING N N 49
2Y6 C7 H12 SING N N 50
2Y6 C3 H13 SING N N 51
2Y6 C2 H14 SING N N 52
2Y6 C1 H15 SING N N 53
2Y6 C13 H16 SING N N 54
2Y6 C10 H17 SING N N 55
2Y6 C11 H18 SING N N 56
2Y6 C15 H19 SING N N 57
2Y6 C15 H20 SING N N 58
2Y6 C15 H21 SING N N 59
2Y6 C16 H22 SING N N 60
2Y6 C16 H23 SING N N 61
2Y6 C16 H24 SING N N 62
2Y6 O1 H25 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2Y6 SMILES ACDLabs 12.01 Clc1ccccc1C(c3sc2c(cccc2c3)c4nccc(c4)C(O)(C)C)NS(=O)(=O)C5CC5
2Y6 InChI InChI 1.03 InChI=1S/C26H25ClN2O3S2/c1-26(2,30)17-12-13-28-22(15-17)20-8-5-6-16-14-23(33-25(16)20)24(19-7-3-4-9-21(19)27)29-34(31,32)18-10-11-18/h3-9,12-15,18,24,29-30H,10-11H2,1-2H3/t24-/m1/s1
2Y6 InChIKey InChI 1.03 CNKIRALQQHARGB-XMMPIXPASA-N
2Y6 SMILES_CANONICAL CACTVS 3.385 CC(C)(O)c1ccnc(c1)c2cccc3cc(sc23)[C@H](N[S](=O)(=O)C4CC4)c5ccccc5Cl
2Y6 SMILES CACTVS 3.385 CC(C)(O)c1ccnc(c1)c2cccc3cc(sc23)[CH](N[S](=O)(=O)C4CC4)c5ccccc5Cl
2Y6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC(C)(c1ccnc(c1)c2cccc3c2sc(c3)[C@@H](c4ccccc4Cl)NS(=O)(=O)C5CC5)O
2Y6 SMILES "OpenEye OEToolkits" 1.7.6 CC(C)(c1ccnc(c1)c2cccc3c2sc(c3)C(c4ccccc4Cl)NS(=O)(=O)C5CC5)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2Y6 "SYSTEMATIC NAME" ACDLabs 12.01 N-[(R)-(2-chlorophenyl){7-[4-(2-hydroxypropan-2-yl)pyridin-2-yl]-1-benzothiophen-2-yl}methyl]cyclopropanesulfonamide
2Y6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 N-[(R)-(2-chlorophenyl)-[7-[4-(2-oxidanylpropan-2-yl)pyridin-2-yl]-1-benzothiophen-2-yl]methyl]cyclopropanesulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2Y6 'Create component' 2014-04-10 RCSB
2Y6 'Initial release' 2015-03-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
2Y6 CL1 Cl 10.491 4.489 1
2Y6 C23 C 11.991 4.489 2
2Y6 C22 C 12.741 5.788 3
2Y6 C21 C 14.241 5.788 4
2Y6 C20 C 14.991 4.489 5
2Y6 C19 C 14.241 3.191 6
2Y6 C18 C 12.741 3.191 7
2Y6 C17 C 11.991 1.891 8
2Y6 N2 N 12.741 0.592 9
2Y6 S2 S 14.241 0.592 10
2Y6 O2 O 14.241 2.092 11
2Y6 O3 O 15.741 0.592 12
2Y6 C24 C 14.241 -0.908 13
2Y6 C25 C 13.491 -2.207 14
2Y6 C26 C 14.991 -2.207 15
2Y6 C8 C 10.491 1.891 16
2Y6 C7 C 9.616 3.099 17
2Y6 S1 S 9.616 0.684 18
2Y6 C5 C 8.196 1.141 19
2Y6 C6 C 8.196 2.642 20
2Y6 C3 C 6.897 3.392 21
2Y6 C2 C 5.598 2.642 22
2Y6 C1 C 5.598 1.141 23
2Y6 C4 C 6.897 0.392 24
2Y6 C9 C 6.897 -1.109 25
2Y6 C13 C 5.598 -1.859 26
2Y6 N1 N 8.196 -1.859 27
2Y6 C10 C 8.196 -3.358 28
2Y6 C11 C 6.897 -4.109 29
2Y6 C12 C 5.598 -3.358 30
2Y6 C14 C 4.299 -4.109 31
2Y6 C15 C 5.049 -5.408 32
2Y6 C16 C 3.000 -4.859 33
2Y6 O1 O 3.549 -2.809 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
2Y6 C16 C14 SINGLE NONE 1
2Y6 C15 C14 SINGLE NONE 2
2Y6 C14 O1 SINGLE NONE 3
2Y6 C14 C12 SINGLE NONE 4
2Y6 C11 C12 SINGLE NONE 5
2Y6 C11 C10 DOUBLE NONE 6
2Y6 C12 C13 DOUBLE NONE 7
2Y6 C10 N1 SINGLE NONE 8
2Y6 C13 C9 SINGLE NONE 9
2Y6 N1 C9 DOUBLE NONE 10
2Y6 C9 C4 SINGLE NONE 11
2Y6 C22 C21 SINGLE NONE 12
2Y6 C22 C23 DOUBLE NONE 13
2Y6 C21 C20 DOUBLE NONE 14
2Y6 C4 C1 DOUBLE NONE 15
2Y6 C4 C5 SINGLE NONE 16
2Y6 CL1 C23 SINGLE NONE 17
2Y6 C23 C18 SINGLE NONE 18
2Y6 C1 C2 SINGLE NONE 19
2Y6 S1 C5 SINGLE NONE 20
2Y6 S1 C8 SINGLE NONE 21
2Y6 C20 C19 SINGLE NONE 22
2Y6 C5 C6 DOUBLE NONE 23
2Y6 C18 C19 DOUBLE NONE 24
2Y6 C18 C17 SINGLE NONE 25
2Y6 C2 C3 DOUBLE NONE 26
2Y6 C8 C17 SINGLE NONE 27
2Y6 C8 C7 DOUBLE NONE 28
2Y6 C6 C3 SINGLE NONE 29
2Y6 C6 C7 SINGLE NONE 30
2Y6 C17 N2 SINGLE BEGINWEDGE 31
2Y6 N2 S2 SINGLE NONE 32
2Y6 O3 S2 DOUBLE NONE 33
2Y6 C25 C26 SINGLE NONE 34
2Y6 C25 C24 SINGLE NONE 35
2Y6 S2 C24 SINGLE NONE 36
2Y6 S2 O2 DOUBLE NONE 37
2Y6 C26 C24 SINGLE NONE 38
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
2Y6 MurckoScaffold S1 scaffold 'O=S(=O)(N[C@H](c1ccccc1)c1cc2cccc(-c3ccccn3)c2s1)C1CC1' InChI=1S/C23H20N2O2S2/c26-29(27,18-12-13-18)25-22(16-7-2-1-3-8-16)21-15-17-9-6-10-19(23(17)28-21)20-11-4-5-14-24-20/h1-11,14-15,18,22,25H,12-13H2/t22-/m1/s1 WWPXDIIQOLRDGC-JOCHJYFZSA-N
2Y6 benzothiophen F1 fragment c1ccc2sccc2c1 InChI=1S/C8H6S/c1-2-4-8-7(3-1)5-6-9-8/h1-6H FCEHBMOGCRZNNI-UHFFFAOYSA-N
2Y6 cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
2Y6 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
2Y6 pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
2Y6 thiophen F5 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
2Y6 Z53825003 F6 fragment CC(NS(C)(=O)=O)c1ccccc1 InChI=1S/C9H13NO2S/c1-8(10-13(2,11)12)9-6-4-3-5-7-9/h3-8,10H,1-2H3 SHEXGLJFVVRUCZ-UHFFFAOYSA-N
2Y6 Z133729708 F7 fragment CC(NS(C)(=O)=O)c1ccccc1Cl InChI=1S/C9H12ClNO2S/c1-7(11-14(2,12)13)8-5-3-4-6-9(8)10/h3-7,11H,1-2H3 HMJIOKFBRSKMHO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
2Y6 C23 S1 1
2Y6 C22 S1 1
2Y6 C21 S1 1
2Y6 C20 S1 1
2Y6 C19 S1 1
2Y6 C18 S1 1
2Y6 C17 S1 1
2Y6 N2 S1 1
2Y6 S2 S1 1
2Y6 O2 S1 1
2Y6 O3 S1 1
2Y6 C24 S1 1
2Y6 C25 S1 1
2Y6 C26 S1 1
2Y6 C8 S1 1
2Y6 C7 S1 1
2Y6 S1 S1 1
2Y6 C5 S1 1
2Y6 C6 S1 1
2Y6 C3 S1 1
2Y6 C2 S1 1
2Y6 C1 S1 1
2Y6 C4 S1 1
2Y6 C9 S1 1
2Y6 C13 S1 1
2Y6 N1 S1 1
2Y6 C10 S1 1
2Y6 C11 S1 1
2Y6 C12 S1 1
2Y6 C5 F1 1
2Y6 C6 F1 1
2Y6 C7 F1 1
2Y6 C8 F1 1
2Y6 S1 F1 1
2Y6 C3 F1 1
2Y6 C2 F1 1
2Y6 C1 F1 1
2Y6 C4 F1 1
2Y6 C24 F2 1
2Y6 C25 F2 1
2Y6 C26 F2 1
2Y6 C23 F3 1
2Y6 C22 F3 1
2Y6 C21 F3 1
2Y6 C20 F3 1
2Y6 C19 F3 1
2Y6 C18 F3 1
2Y6 C5 F3 2
2Y6 C4 F3 2
2Y6 C1 F3 2
2Y6 C2 F3 2
2Y6 C3 F3 2
2Y6 C6 F3 2
2Y6 C9 F4 1
2Y6 C13 F4 1
2Y6 C12 F4 1
2Y6 C11 F4 1
2Y6 C10 F4 1
2Y6 N1 F4 1
2Y6 C8 F5 1
2Y6 C7 F5 1
2Y6 C6 F5 1
2Y6 C5 F5 1
2Y6 S1 F5 1
2Y6 C8 F6 1
2Y6 C17 F6 1
2Y6 N2 F6 1
2Y6 S2 F6 1
2Y6 O3 F6 1
2Y6 O2 F6 1
2Y6 C24 F6 1
2Y6 C18 F6 1
2Y6 C23 F6 1
2Y6 C22 F6 1
2Y6 C21 F6 1
2Y6 C20 F6 1
2Y6 C19 F6 1
2Y6 C8 F7 1
2Y6 C17 F7 1
2Y6 N2 F7 1
2Y6 S2 F7 1
2Y6 O3 F7 1
2Y6 O2 F7 1
2Y6 C24 F7 1
2Y6 C18 F7 1
2Y6 C19 F7 1
2Y6 C20 F7 1
2Y6 C21 F7 1
2Y6 C22 F7 1
2Y6 C23 F7 1
2Y6 CL1 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 2Y6
_pdbe_chem_comp_rdkit_properties.exactmw 512.100
_pdbe_chem_comp_rdkit_properties.amw 513.084
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 59
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.269
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 243.313
_pdbe_chem_comp_rdkit_properties.tpsa 79.290
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.043
_pdbe_chem_comp_rdkit_properties.CrippenMR 134.347
_pdbe_chem_comp_rdkit_properties.chi0v 18.703
_pdbe_chem_comp_rdkit_properties.chi1v 11.577
_pdbe_chem_comp_rdkit_properties.chi2v 6.781
_pdbe_chem_comp_rdkit_properties.chi3v 6.781
_pdbe_chem_comp_rdkit_properties.chi4v 4.814
_pdbe_chem_comp_rdkit_properties.chi0n 41.314
_pdbe_chem_comp_rdkit_properties.chi1n 21.298
_pdbe_chem_comp_rdkit_properties.chi2n 4.243
_pdbe_chem_comp_rdkit_properties.chi3n 4.243
_pdbe_chem_comp_rdkit_properties.chi4n 2.693
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.290
_pdbe_chem_comp_rdkit_properties.kappa1 8.114
_pdbe_chem_comp_rdkit_properties.kappa2 8.734
_pdbe_chem_comp_rdkit_properties.kappa3 4.632
_pdbe_chem_comp_rdkit_properties.Phi 2.084
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
2Y6 UniChem ChEMBL CHEMBL3746320
2Y6 UniChem PDBe 2Y6
2Y6 UniChem ZINC ZINC000207144720
2Y6 UniChem SureChEMBL SCHEMBL15390216
2Y6 UniChem PubChem 72548598
2Y6 UniChem BindingDb 50500202
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
2Y6 CL1 3.767 2.272 -1.104 ETKDGv3 1
2Y6 C23 3.765 0.515 -1.020 ETKDGv3 2
2Y6 C22 4.208 -0.166 -2.087 ETKDGv3 3
2Y6 C21 4.231 -1.640 -2.077 ETKDGv3 4
2Y6 C20 3.803 -2.308 -1.003 ETKDGv3 5
2Y6 C19 3.311 -1.574 0.178 ETKDGv3 6
2Y6 C18 3.300 -0.226 0.198 ETKDGv3 7
2Y6 C17 2.768 0.491 1.428 ETKDGv3 8
2Y6 N2 3.683 1.554 1.881 ETKDGv3 9
2Y6 S2 5.170 0.901 2.518 ETKDGv3 10
2Y6 O2 4.904 -0.355 3.302 ETKDGv3 11
2Y6 O3 5.783 1.919 3.439 ETKDGv3 12
2Y6 C24 6.326 0.601 1.179 ETKDGv3 13
2Y6 C25 6.597 -0.856 0.837 ETKDGv3 14
2Y6 C26 7.620 -0.059 1.627 ETKDGv3 15
2Y6 C8 1.391 1.031 1.122 ETKDGv3 16
2Y6 C7 1.065 2.308 0.883 ETKDGv3 17
2Y6 S1 -0.052 -0.007 0.940 ETKDGv3 18
2Y6 C5 -1.091 1.385 0.551 ETKDGv3 19
2Y6 C6 -0.363 2.501 0.554 ETKDGv3 20
2Y6 C3 -0.982 3.794 0.213 ETKDGv3 21
2Y6 C2 -2.284 3.829 -0.106 ETKDGv3 22
2Y6 C1 -3.094 2.583 -0.112 ETKDGv3 23
2Y6 C4 -2.534 1.394 0.199 ETKDGv3 24
2Y6 C9 -3.336 0.147 0.216 ETKDGv3 25
2Y6 C13 -4.432 -0.077 -0.762 ETKDGv3 26
2Y6 N1 -3.076 -0.771 1.102 ETKDGv3 27
2Y6 C10 -3.825 -1.992 1.177 ETKDGv3 28
2Y6 C11 -4.817 -2.227 0.313 ETKDGv3 29
2Y6 C12 -5.130 -1.232 -0.749 ETKDGv3 30
2Y6 C14 -6.295 -1.457 -1.721 ETKDGv3 31
2Y6 C15 -7.596 -1.015 -1.038 ETKDGv3 32
2Y6 C16 -6.419 -2.939 -2.142 ETKDGv3 33
2Y6 O1 -6.134 -0.679 -2.885 ETKDGv3 34
2Y6 H1 4.552 0.360 -2.968 ETKDGv3 35
2Y6 H2 4.593 -2.179 -2.944 ETKDGv3 36
2Y6 H3 3.817 -3.391 -0.996 ETKDGv3 37
2Y6 H4 2.965 -2.146 1.030 ETKDGv3 38
2Y6 H5 2.623 -0.230 2.263 ETKDGv3 39
2Y6 H6 3.229 2.052 2.682 ETKDGv3 40
2Y6 H7 6.443 1.341 0.361 ETKDGv3 41
2Y6 H8 6.880 -1.030 -0.223 ETKDGv3 42
2Y6 H9 6.058 -1.619 1.436 ETKDGv3 43
2Y6 H10 7.682 -0.349 2.698 ETKDGv3 44
2Y6 H11 8.515 0.229 1.037 ETKDGv3 45
2Y6 H12 1.773 3.125 0.913 ETKDGv3 46
2Y6 H13 -0.393 4.702 0.215 ETKDGv3 47
2Y6 H14 -2.753 4.772 -0.358 ETKDGv3 48
2Y6 H15 -4.148 2.660 -0.345 ETKDGv3 49
2Y6 H16 -4.651 0.690 -1.493 ETKDGv3 50
2Y6 H17 -3.592 -2.716 1.946 ETKDGv3 51
2Y6 H18 -5.383 -3.143 0.408 ETKDGv3 52
2Y6 H19 -8.460 -1.156 -1.723 ETKDGv3 53
2Y6 H20 -7.776 -1.604 -0.112 ETKDGv3 54
2Y6 H21 -7.541 0.062 -0.766 ETKDGv3 55
2Y6 H22 -7.141 -3.035 -2.981 ETKDGv3 56
2Y6 H23 -6.788 -3.575 -1.311 ETKDGv3 57
2Y6 H24 -5.436 -3.327 -2.485 ETKDGv3 58
2Y6 H25 -5.299 -0.977 -3.335 ETKDGv3 59
#